Typing tool
|
Complete norovirus genomes
LC369237 | GII.17 | ||
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GII.P17 |
ORF1: 1..5108 ORF2: 5089..6711 ORF3: 6711..7490LOCUS LC369237 7608 bp RNA linear VRL 28-JUN-2023 DEFINITION Norovirus GII NoV/Hu/JP/2015/GII.P17-GII.17/MI-88 genomic RNA, nearly complete genome. ACCESSION LC369237 VERSION LC369237.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Matsushima,Y., Mizukoshi,F., Sakon,N., Doan,Y.H., Ueki,Y., Ogawa,Y., Motoya,T., Tsukagoshi,H., Nakamura,N., Shigemoto,N., Yoshitomi,H., Okamoto-Nakagawa,R., Suzuki,R., Tsutsui,R., Terasoma,F., Takahashi,T., Sadamasu,K., Shimizu,H., Okabe,N., Nagasawa,K., Aso,J., Ishii,H., Kuroda,M., Ryo,A., Katayama,K. and Kimura,H. TITLE Evolutionary Analysis of the VP1 and RNA-Dependent RNA Polymerase Regions of Human Norovirus GII.P17-GII.17 in 2013-2017 JOURNAL Front Microbiol 10, 2189 (2019) PUBMED 31611853 REMARK DOI:10.3389/fmicb.2019.02189 Publication Status: Online-Only REFERENCE 2 (bases 1 to 7608) AUTHORS Doan,Y.H., Katayama,K. and Kimura,H. TITLE Direct Submission JOURNAL Submitted (02-FEB-2018) Contact:Yen Hai Doan National Institute of Infectious Diseases; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7608 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="NoV/Hu/JP/2015/GII.P17-GII.17/MI-88" /host="Homo sapiens" /db_xref="taxon:122929" /country="Japan:Miyagi" /collection_date="2015" /note="genotype: GII.P17-GII.17" gene <1..5108 /gene="POL" CDS <1..5108 /gene="POL" /note="start codon is not identified" /codon_start=3 /product="nonstructural polyprotein" /protein_id="BBD04683.1" /translation="KMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARS KQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQ PDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAA ISLAKIEITPLSLYWRVVYTPQYLIAPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLN DSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDII GKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGP EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWF FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKL STKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLAR ELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELAD TCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDI EKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIA RASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKNVK TLDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVERVQNATVQTNNELVGALHH LRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRG GCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREER NGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLG LVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWV SPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAP EGTVVTILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTP GDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPI LGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDQRVKGGPSLQQVMRDQLKPFT EPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKND YWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGS DLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSR WDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVP CTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAK LKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTR GPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPR QESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5089..6711 /gene="VP1" CDS 5089..6711 /gene="VP1" /codon_start=1 /product="capsid protein VP1" /protein_id="BBD04684.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6711..7490 /gene="VP2" CDS 6711..7490 /gene="VP2" /codon_start=1 /product="capsid protein VP2" /protein_id="BBD04685.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 tgaagatggc gtctaacgac gcttccgctg ccgttgctgg caaaaacaac aacaacgaca 61 aggaaaaatc ttcaagtgac agcttgtttg ctaacatgtc tgttactttt aagaaagccc 121 tcggggcgcg gtctaaacaa ccgcccccgg gagaaacaaa acaaatacaa aaaccaccaa 181 ggccaccgac accggaattg gtgaagagaa tacctccacc cccacctaat ggcgaggatg 241 aaccagggat agtgtacaag gtgggagagg gtgtgtctgg gctgcccgac ctaacaactg 301 tggtacaacc tgacgcacaa aacacagctt atagtgttcc cccacttagc cagagagaag 361 tcggcgaagc taaagaaccg ctgcctggct ccattctgga aatgtgggat ggtgagatct 421 accactatgg gctgtatgtt gagcgggggc atgtgctcgg agtacacaag ccacctgctg 481 caataagcct tgccaaaatt gaaataacac cgctgtctct ctactggaga gtggtctaca 541 ctccccagta tttgatagct ccaggaactc ttaagaactt gagtggagag actttcccat 601 acacggcctt tgacaacaac tgttatgcct tctgttgttg ggtcctagac ctcaacgact 661 cctggcttag caggagaatg atccaaagaa caactggatt cttcaaacct tatcaggatt 721 ggaacagaaa acccttacca accatggatg aaccgaaaat caagaaggcc gcgaatgctg 781 ttttatgcgc tctctcctca ctcttcacta gacccattaa ggacatcatt ggaaagctta 841 gaccactgaa cattcttaat atactggcaa cctgcgattg gacttttgca ggcatagtgg 901 aatccttgat ccttcttgct gaactctttg gggtgttctg gacaccccca gatgtgtctg 961 cgatgattgc tcccttactc ggtgactacg agatgcaagg ccccgaagac ctggccgtgg 1021 aacttgtgcc cgtggtgatg ggaggaatag gtttggtgtt aggattcacc aaagaaaaga 1081 tcggcaagat gctatcatca gctgcaacca cacttagggc ctgcaaggat ctaggatctt 1141 atggattgga gatactcaaa ttggtcatga agtggttctt ccccaagaag gaggaggcta 1201 acgaactagc catggtgagg gccattgagg atgcagtcct ggatttggag gcaatagaaa 1261 acaatcacat gaccaccctt ctcaaggata aagacagcct ggccacatac atgaggactc 1321 ttgacttgga agaagagaaa gcaaggaaac tgtcaaccaa atcggcgtca cctgacattg 1381 tgggtacaat aaacgcatta ttggctagga tagcagccgc caggtcactg gtccacaagg 1441 ctaaggagga gctctcgagc agacagagac ctgttgttgt aatgatatca ggtagaccag 1501 gtataggaaa gacccatctg gccagagagc tagccaagaa agttgcgtca acactgtcag 1561 gcgaccaaag gattggactg gtacctagaa atggcgtcga ccattgggac gcctacaagg 1621 gagaaagggt ggttctgtgg gatgattatg gtatgagcaa ccctatacag gacgcactga 1681 ggctccaaga attggctgac acctgtcctc tgaccctaaa ttgtgacagg attgaaaaca 1741 aaggaaaagt gttcgacagt gatgccataa ttataacaac caaccttgca aacccagcac 1801 cactagacta tgtcaacttt gaggcctgct ctagacgcat agacttcttg gtgtatgcag 1861 acgcacctga cattgagaag gctaagcgtg acttccctgg ccaaccagat atgtggaaag 1921 accatttcag accagacttc tcacacatta aacttcagct ggcaccacag ggaggttttg 1981 acaaaaatgg caacacccca catggcaaag gtgtggtgaa gtccctgacg attggttctc 2041 tgatcgccag ggcctctggc ttgctccacg agagaatgga tgaattcgag ctccaaggct 2101 ctgacctgcc aaccttcaat tttgaccgca acaaagtcgc cgccttcaga caattagcag 2161 ctgaaaacaa atatggtctt atggacacgc tgagggtcgg caaccaactg aaaaatgtta 2221 agaccctgga tgagctgaag caggccataa agaacatcag tatcaagaag tgtcagatag 2281 tgtataatgg atgcacctat accatggaat ctgatgggag gggcaaggtt gtggttgaaa 2341 gggtacaaaa cgcaacagtt caaaccaaca atgaacttgt aggggcgctc caccacctga 2401 gatctgcaag gataaggtac tatgttaaat gtttccaaga agccatttac tctctactcc 2461 aaattgctgg tgcagccttc gtcacctcac gcatcgtgag gcgcatgaac atatcaaacc 2521 tctggtcgaa gccacccatc gaggagggtg atgagcctga agacagagga ggatgcccca 2581 agcccaggga tgaagatgac ctcactattg actctagaga cattaaagtg gaagggaaga 2641 agggcaagaa caagtctggc cggggcaaga aacacacagc cttctcttcc aagggcctca 2701 gtgatgaaga gtacgatgag tacaagagaa tcagagagga gaggaatggc aaatactcaa 2761 tagaggaata cctccaagat agggacagat actatgaaga gcttgccatt gctaaggcca 2821 ctgaggagga cttctgtgag gaggaggaga tcaaaatccg ccagagaatc ttccgaccca 2881 ccaggaagca gcggaaagag gaaagggcca cgcttgggct tgtcacagga tcggaaatca 2941 gaaagaggaa tccagatgac tttaaaccaa aagggaaatt gtgggctgat gacaacagga 3001 gtgtggatta caatgagagg atagattttg aggctccccc gagtgtttgg tctaggatag 3061 tcaactttgg cacaggctgg ggattctggg tttctccaag tctctttata acttcaacac 3121 acgtcatacc aaaaggaatc actgaggcct ttggagtgcc cataaaccaa atccaaattc 3181 acaaatctgg agaattttgc cgcttgcggt ttccaaagcc aattaggcca gacgtgagtg 3241 ggatgatctt ggaagagggt gcccctgaag gcactgttgt gactattctc atcaaaagga 3301 caacagggga gctgatgcct cttgcagtta gaatggggac tcatgccaca atgaaaatcc 3361 aaggtagaac ggtgggtggt cagatgggta tgcttctcac tggctcaaat gctaaaagca 3421 tggatctagg cacaacgcca ggtgactgcg gatgtccata catatacaaa aggggcaatg 3481 accttgtggt cattggggtg cacactgcag cagctcgtgg aggcaacacg gtcatatgtg 3541 ccacacaggg aagtgaaggt gaagccactc ttgaaggagg tgacaacaag ggtacctatt 3601 gtggagcccc cattttggga cctggcaatg caccaaaatt gagcacaaag acaaaattct 3661 ggagatcctc taacgcaccg cttcccccag gtacttatga accagcatac cttggtggga 3721 gagaccagcg cgtgaaggga ggcccatctc tgcaacaagt tatgagagac caacttaaac 3781 cttttacaga gcccagaggg aagccaccaa acccaaatgt cttagagtca gcaaagaaga 3841 ctatcatcaa tgttctggaa caaaccattg acccccctca aaagtggtca tatgcccaag 3901 cctgtgcatc cctcgacaag acgacctcca gtggataccc gcaccacgtc cggaagaatg 3961 actattggag tggagaatcc ttcacaggaa aacttgcaga tcaggcttca aaagcaaatc 4021 tcatgtatga ggaaggcaag cacatgcaac cagtttacac cgcagcactc aaagacgagc 4081 tcgtgaaaac tgataaaatt tatggcaaaa tcaagaaaag actcctgtgg ggttctgacc 4141 tctccacaat gattcgatgc gccagagcat ttggtggtct catggatgaa ttcaaagcaa 4201 attgtatcac actccctatc agagttggta tgaatatgaa tgaagatggt cccataatat 4261 ttgagaaaca ctccaggtac aggtatcact atgatgctga ttactcccgc tgggactcca 4321 cacaacagcg ggcagtgctg gaagcggcac ttgaaatcat ggtgagattt tctgctgagc 4381 cacagctggc acaaatagtg gcagaggacc tgctgtcacc aagtgtggtt gatgtgggcg 4441 atttcaagat cgctatcaat gaaggcctac catctggcgt gccttgcacc tcacagtgga 4501 attctattgc ccactggtta cttaccttgt gtgccctttc tgaagtgaca ggattaggtc 4561 ctgatatcat acaagctaac tccatgtact ctttctatgg tgatgatgag attgtgagca 4621 cagacataaa attggaccca gagaaattga ccgcaaagct caaagaatat ggccttaaac 4681 ccacccggcc cgacaaaact gaggggccgt tggtgattag tgaagacctg aatgggttga 4741 ctttcctccg ccgaacagtc acccgtgatc cagcaggttg gtttggaaag ttggaccaaa 4801 actccatcct caggcagttg tactggacaa gaggacccaa ccatgaagac cccagtgaga 4861 ccatgatacc acacgcacaa agacctgtgc agctcatggc actactaggt gaatcctccc 4921 tacatggacc ctcattttac agcaaggtta gcaaattagt catatctgaa cttaaagagg 4981 gaggaatgga tttttatgtg cccagacaag agtcaatgtt cagatggatg aggttctcag 5041 atctaagcac atgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg 5101 tcgaatgacg ccgctccatc taatgatggt gctgctggtc tcgtaccaga gggcaataac 5161 gagacccttc ccctagaacc agttgcgggc gcagctatag ccgcacccgt cactggccaa 5221 aataacataa ttgacccctg gattagaaca aattttgtgc aagcaccaaa tggagagttc 5281 acagtgtcac ccagaaactc tcctggagaa attttattaa acttagagtt gggccctgat 5341 ttgaatcctt atttggctca tttgtcaagg atgtacaatg ggtatgctgg tggagtggaa 5401 gttcaggttc tcctggcagg gaacgcgttc actgccggaa agatcctctt cgccgccgtc 5461 ccgccaaatt tcccagtgga attcttaagc ccagcccaga tcacaatgct cccacattta 5521 atagtagatg ttaggactct tgaaccaatt atgatcccac tccctgatgt taggaataca 5581 ttcttccatt atagtaacca gcctaacagc cgcatgagat tagtggctat gctctatacc 5641 ccactcagat ctaatggctc aggtgatgat gtctttactg tctcttgcag ggttttgact 5701 aggcctactc ctgattttga gttcacttat ttagtgccac cttctgttga atctaaaact 5761 aagccttttt ccttacctat tttaaccctt tctgagctca caaattcgag gttcccagtc 5821 cccatcgatt cgcttttcac cgcccagaat aatgtgttgc aggtgcagtg tcaaaatggc 5881 aggtgcacac ttgatggtga gttacaaggc acaacccagt tgctcccatc tggcatctgt 5941 gcattcagag gacgggtgac agcacaaatt aaccaacgtg acaggtggca catgcaactg 6001 caaaacctca atggtacaac atatgaccca actgatgatg tgccagcccc gctgggtaca 6061 cctgacttca agggcgtcgt gtttgggatg gtaagccaaa gaaatgtggg taatgatgcg 6121 cctggctcaa ccagagccca acaggcgtgg gtttcaacct atagccccca atttgtcccc 6181 aaattaggtt ctgtcaatct tagaattagt gataatgatg atttccaatt ccagccgaca 6241 aaattcacac cagtgggcgt caatgatgac gatgatggcc acccgttcag acaatgggaa 6301 ttaccaaact attcagggga gcttaccttg aatatgaatc ttgccccccc agttgctcca 6361 aattttcctg gtgaacaatt gttattcttc agatctttcg tgccatgctc aggaggttac 6421 aaccaaggta ttatagattg tcttattccc caagaatgga tccaacactt ctatcaggaa 6481 tcagcaccct cccagtcaga cgtggcccta atcaggtatg tcaatcctga cacgggacga 6541 acactgtttg aagcaaaatt gcacagatct ggttacatta ctgtggctca ctctggagac 6601 tatcctcttg ttgttccggc taatggacac tttagatttg attcttgggt aaatcagttt 6661 tactcactcg ccccaatggg aactgggaat gggcgaagga gggctcagta atggctgggg 6721 ctttcattgc aggattggca ggcgacatgc tcacgtcatc tgtgggctcc cttgtgaacg 6781 caggggcaaa cgccatcaac caaaagatag actttgaaaa caacaaacaa ctccagtctg 6841 cttcctttca gcatgataaa gagatgctcc aagcgcaggt gaaggcaacc aagcagctgc 6901 aatctgagat gatagcccta aaacaggggg ttttggccgc aggcggcttt tcccccactg 6961 atgcagcaag gggagccatt ggtgcaccca tgacaaaggt gcttgactgg tctggcactc 7021 gatactgggc gcccaactcc acaaagacaa ctggttattc gggacaattc acctcttcac 7081 ctgtgcacat gtctagccca aatgctccac aatcaaaacc tgcaaagcct aggtctctag 7141 ctccttcctc ttcttctagc agtgtctata gtatgtatac tcaatctact catttaacat 7201 ctggctcttc tagtaatgct tcttctgcct ctacaaaatt gacaaattta agctctggct 7261 cctctcaaaa cagaacagca gagtgggtaa atcaacagag aagtcttagc cctttcatga 7321 gtggcgcact taacatctca catgtcacgc caccctcaag tagggcttcc agttctggga 7381 cggtctcgac cgtgcccaag gaagttttgg actcctggac gtctgcgttt aacacacaca 7441 gacagccgct cttcgcacac ctcagagtga ggggggagtc acgtgtttag tgaaaagaaa 7501 taattggcta taatttgatt tctttctaaa ttcggctaat ttgtgtcttt taaaaaaaaa 7561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa //