Typing tool
|
Complete norovirus genomes
LC369236 | GII.17 | ||
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GII.P17 |
ORF1: 5..5113 ORF2: 5094..6716 ORF3: 6716..7495LOCUS LC369236 7562 bp RNA linear VRL 28-JUN-2023 DEFINITION Norovirus GII NoV/Hu/JP/2015/GII.P17-GII.17/MI-87 genomic RNA, complete genome. ACCESSION LC369236 VERSION LC369236.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Matsushima,Y., Mizukoshi,F., Sakon,N., Doan,Y.H., Ueki,Y., Ogawa,Y., Motoya,T., Tsukagoshi,H., Nakamura,N., Shigemoto,N., Yoshitomi,H., Okamoto-Nakagawa,R., Suzuki,R., Tsutsui,R., Terasoma,F., Takahashi,T., Sadamasu,K., Shimizu,H., Okabe,N., Nagasawa,K., Aso,J., Ishii,H., Kuroda,M., Ryo,A., Katayama,K. and Kimura,H. TITLE Evolutionary Analysis of the VP1 and RNA-Dependent RNA Polymerase Regions of Human Norovirus GII.P17-GII.17 in 2013-2017 JOURNAL Front Microbiol 10, 2189 (2019) PUBMED 31611853 REMARK DOI:10.3389/fmicb.2019.02189 Publication Status: Online-Only REFERENCE 2 (bases 1 to 7562) AUTHORS Doan,Y.H., Katayama,K. and Kimura,H. TITLE Direct Submission JOURNAL Submitted (02-FEB-2018) Contact:Yen Hai Doan National Institute of Infectious Diseases; 4-7-1 Gakuen, Musashimurayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7562 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="NoV/Hu/JP/2015/GII.P17-GII.17/MI-87" /host="Homo sapiens" /db_xref="taxon:122929" /country="Japan:Miyagi" /collection_date="2015" /note="genotype: GII.P17-GII.17" gene 5..5113 /gene="POL" CDS 5..5113 /gene="POL" /codon_start=1 /product="nonstructural polyprotein" /protein_id="BBD04680.1" /translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGAR SKQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGVVYKVGEGVSGLPDLTTVV QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA AISLAKIEITPLSLYWRVVYTPQYLIAPGTLKNLSGETFPYTAFDNNCYAFCCWVLDL NDSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI IGKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQG PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA RELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD IEKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKNV KTLDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVERVQNATVQTNNELVGALH HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDR GGCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA PEGTVVTILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT PGDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDQRVKGGPSLQQVMRDQLKPF TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG SDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5094..6716 /gene="VP1" CDS 5094..6716 /gene="VP1" /codon_start=1 /product="capsid protein VP1" /protein_id="BBD04681.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6716..7495 /gene="VP2" CDS 6716..7495 /gene="VP2" /codon_start=1 /product="capsid protein VP2" /protein_id="BBD04682.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 gtacatgaag atggcgtcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa 61 cgacaaggaa aaatcttcaa gtgacagctt gtttgctaac atgtctgtta cttttaagaa 121 agccctcggg gcgcggtcta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc 181 accaaggcca ccgacgccgg aattggtgaa gagaatacct ccacccccac ctaatggcga 241 ggatgaacca ggggtagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac 301 aactgtggta caacctgacg cacaaaacac agcttatagt gttcccccac ttagccagag 361 agaagtcggc gaagctaaag aaccgctgcc tggctccatt ctggaaatgt gggatggtga 421 gatctaccac tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaagccacc 481 tgctgcaata agccttgcca aaattgaaat aacaccgctg tctctctact ggagagtggt 541 ctacactccc cagtatttga tagctccagg aactcttaag aacttgagtg gagagacttt 601 cccatacacg gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagacctcaa 661 cgactcctgg cttagcagga gaatgatcca aagaacaact ggattcttca aaccttatca 721 ggattggaac agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aggccgcgaa 781 tgctgtttta tgcgctctct cctcactctt cactagaccc attaaggaca tcattggaaa 841 gcttagacca ctgaacattc ttaatatact ggcaacctgc gattggactt ttgcaggcat 901 agtggaatcc ttgatccttc ttgctgaact ctttggggtg ttctggacac ccccagatgt 961 gtctgcgatg attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc 1021 cgtggaactt gtgcccgtgg tgatgggagg aataggtttg gtgttaggat tcaccaaaga 1081 aaagatcggc aagatgctat catcagctgc aaccacactt agggcctgca aggatctagg 1141 atcttatgga ttggagatac tcaaattggt catgaagtgg ttcttcccca agaaggagga 1201 ggctaacgaa ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat 1261 agaaaacaat cacatgacca cccttctcaa ggataaagac agcctggcca catacatgag 1321 gactcttgac ttggaagaag agaaagcaag gaaactgtca accaaatcgg cgtcacctga 1381 cattgtgggt acaataaacg cattattggc taggatagca gccgccaggt cactggtcca 1441 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag 1501 accaggtata ggaaagaccc atctggccag agagctagcc aagaaagttg cgtcaacact 1561 gtcaggcgac caaaggattg gactggtacc tagaaatggc gtcgaccatt gggacgccta 1621 caagggagaa agggtggttc tgtgggatga ttatggtatg agcaacccta tacaggacgc 1681 actgaggctc caagaattgg ctgacacctg tcctctgacc ctaaattgtg acaggattga 1741 aaacaaagga aaagtgttcg acagtgatgc cataattata acaaccaacc ttgcaaaccc 1801 agcaccacta gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta 1861 tgcagacgca cctgacattg agaaggctaa gcgtgacttc cctggccaac cagatatgtg 1921 gaaagaccat ttcagaccag acttctcaca cattaaactt cagctggcac cacagggagg 1981 ttttgacaaa aatggcaaca ccccacatgg caaaggtgtg gtgaagtccc tgacgattgg 2041 ttctctgatc gccagggcct ctggcttgct ccacgagaga atggatgaat tcgagctcca 2101 aggctctgac ctgccaacct tcaattttga ccgcaacaaa gtcgccgcct tcagacaatt 2161 agcagctgaa aacaaatatg gtcttatgga cacgctgagg gtcggcaacc aactgaaaaa 2221 tgttaagacc ctggatgagc tgaagcaggc cataaagaac atcagtatca agaagtgtca 2281 gatagtgtat aatggatgca cctataccat ggaatctgat gggaggggca aggttgtggt 2341 tgaaagggta caaaacgcaa cagttcaaac caacaatgaa cttgtagggg cgctccacca 2401 cctgagatct gcaaggataa ggtactatgt taaatgtttc caagaagcca tttactctct 2461 actccaaatt gctggtgcag ccttcgtcac ctcacgcatc gtgaggcgca tgaacatatc 2521 aaacctctgg tcgaagccac ccatcgagga gggtgatgag cctgaagaca gaggaggatg 2581 ccccaagccc agggatgaag atgacctcac tattgactct agagacatta aagtggaagg 2641 gaagaagggc aagaacaagt ctggccgggg caagaaacac acagccttct cttccaaggg 2701 cctcagtgat gaagagtacg atgagtacaa gagaatcaga gaggagagga atggcaaata 2761 ctcaatagag gaatacctcc aagataggga cagatactat gaagagcttg ccattgctaa 2821 ggccactgag gaggacttct gtgaggagga ggagatcaaa atccgccaga gaatcttccg 2881 acccaccagg aagcagcgga aagaggaaag ggccacgctt gggcttgtca caggatcgga 2941 aatcagaaag aggaatccag atgactttaa accaaaaggg aaattgtggg ctgatgacaa 3001 caggagtgtg gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag 3061 gatagtcaac tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacttc 3121 aacacacgtc ataccaaaag gaatcactga ggcctttgga gtgcccataa accaaatcca 3181 aattcacaaa tctggagaat tttgccgctt gcggtttcca aagccaatta ggccagacgt 3241 gagtgggatg atcttggaag agggtgcccc tgaaggcact gttgtgacta ttctcatcaa 3301 aaggacaaca ggggagctga tgcctcttgc agttagaatg gggactcatg ccacaatgaa 3361 aatccaaggt agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa 3421 aagcatggat ctaggcacaa cgccaggtga ctgcggatgt ccatacatat acaaaagggg 3481 caatgacctt gtggtcattg gggtgcacac tgcagcagct cgtggaggca acacggtcat 3541 atgtgccaca cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaagggtac 3601 ctattgtgga gcccccattt tgggacctgg caatgcacca aaattgagca caaagacaaa 3661 attctggaga tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg 3721 tgggagagac cagcgcgtga agggaggccc atctctgcaa caagttatga gagaccaact 3781 taaacctttt acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa 3841 gaagactatc atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc 3901 ccaagcctgt gcatccctcg acaagacgac ctccagtgga tacccgcacc acgtccggaa 3961 gaatgactat tggagtggag aatccttcac aggaaaactt gcagatcagg cttcaaaagc 4021 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga 4081 cgagctcgtg aaaactgata aaatttatgg caaaatcaag aaaagactcc tgtggggttc 4141 tgacctctcc acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa 4201 agcaaattgt atcacactcc ctatcagagt tggtatgaat atgaatgaag atggtcccat 4261 aatatttgag aaacactcca ggtacaggta tcactatgat gctgattact cccgctggga 4321 ctccacacaa cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc 4381 tgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt 4441 gggcgatttc aagatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca 4501 gtggaattct attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacaggatt 4561 aggtcctgat atcatacaag ctaactccat gtactctttc tatggtgatg atgagattgt 4621 gagcacagac ataaaattgg acccagagaa attgaccgca aagctcaaag aatatggcct 4681 taaacccacc cggcccgaca aaactgaggg gccgttggtg attagtgaag acctgaatgg 4741 gttgactttc ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga 4801 ccaaaactcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag 4861 tgagaccatg ataccacacg cacaaagacc tgtgcagctc atggcactac taggtgaatc 4921 ctccctacat ggaccctcat tttacagcaa ggttagtaaa ttagtcatat ctgaacttaa 4981 agagggagga atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt 5041 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga 5101 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca 5161 ataacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg 5221 gccaaaataa cataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag 5281 agttcacagt gtcacccaga aactctcctg gagaaatttt attaaactta gagttgggcc 5341 ctgatttgaa tccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag 5401 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg 5461 ccgtcccgcc aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac 5521 atttaatagt agatgttagg actcttgaac caattatgat cccactccct gatgttagga 5581 atacattctt ccattatagt aaccagccta acagccgcat gagattagtg gctatgctct 5641 ataccccact cagatctaat ggctcaggtg atgatgtctt tactgtctct tgcagggttt 5701 tgactaggcc tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta 5761 aaactaagcc tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggttcc 5821 cagtccccat cgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa 5881 atggcaggtg cacacttgat ggtgagttac aaggcacaac ccagttgctc ccatctggca 5941 tctgtgcatt cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc 6001 aactgcaaaa cctcaatggt acaacatatg acccaactga tgatgtgcca gccccgctgg 6061 gtacacctga cttcaagggc gtcgtgtttg ggatggtaag ccaaagaaat gtgggtaatg 6121 atgcgcctgg ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg 6181 tccccaaatt aggttctgtc aatcttagaa ttagtgataa tgatgatttc caattccagc 6241 cgacaaaatt cacaccagtg ggcgtcaatg atgacgatga tggccacccg ttcagacaat 6301 gggaattacc aaactattca ggggagctta ccttgaatat gaatcttgcc cccccagttg 6361 ctccaaattt tcctggtgaa caattgttat tcttcagatc tttcgtgcca tgctcaggag 6421 gttacaacca aggtattata gattgtctta ttccccaaga atggatccaa cacttctatc 6481 aggaatcagc accctcccag tcagacgtgg ccctaatcag gtatgtcaat cctgacacgg 6541 gacgaacact gtttgaagca aaattgcaca gatctggtta cattactgtg gctcactctg 6601 gagactatcc tcttgttgtt ccggctaatg gacactttag atttgattct tgggtaaatc 6661 agttttactc actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc 6721 tggggctttc attgcaggat tggcaggcga catgctcacg tcatctgtgg gctcccttgt 6781 gaacgcaggg gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca 6841 gtctgcttcc tttcagcatg ataaagagat gctccaagcg caggtgaagg caaccaagca 6901 gctgcaatct gagatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc 6961 cactgatgca gcaaggggag ccattggtgc acccatgaca aaggtgcttg actggtctgg 7021 cactcgatac tgggcgccca actccacaaa gacaactggt tattcgggac aattcacctc 7081 ttcacctgtg cacatgtcta gcccaaatgc tccacaatca aaacctgcaa agcctaggtc 7141 tctagctcct tcctcttctt ctagcagtgt ctatagtatg tatactcaat ctactcattt 7201 aacatctggc tcttctagta atgcttcttc tgcctctaca aaattgacaa atttaagctc 7261 tggctcctct caaaacagaa cagcagagtg ggtaaatcaa cagagaagtc ttagcccttt 7321 catgagtggc gcacttaaca tctcacatgt cacgccaccc tcaagtaggg cttccagttc 7381 tgggacggtc tcgaccgtgc ccaaggaagt tttggactcc tggacgtctg cgtttaacac 7441 acacagacag ccgctcttcg cacacctcag agtgaggggg gagtcacgtg tttagtgaaa 7501 agaaataatt ggctataatt tgatttcttt ctaaattcgg ctaatttgtg tcttttaaaa 7561 aa //