Typing tool
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Typing tool
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Complete norovirus genomes
| LC349992 | GII.17 | |
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| GII.P17 |
ORF1: 1..1640
ORF2: 1621..3243
ORF3: 3243..3432
LOCUS LC349992 3432 bp RNA linear VRL 22-JUN-2018
DEFINITION Norovirus Hu/GII/JP/2015/GII.P17-GII.17/AichiF289 POL, VP1, VP2
genes for nonstructural polyprotein, capsid protein VP1, capsid
protein VP2, partial and complete cds.
ACCESSION LC349992
VERSION LC349992.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2015/GII.P17-GII.17/AichiF289
ORGANISM Norovirus Hu/GII/JP/2015/GII.P17-GII.17/AichiF289
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Nakamura,N.
TITLE Molecular Epidemiology of Enteric Viruses in Pediatric Patients
with Acute Gastroenteritis in Aichi Prefecture, Japan
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3432)
AUTHORS Nakamura,N., Hata,M., Yasui,Y., Matsumoto,M. and Minagawa,H.
TITLE Direct Submission
JOURNAL Submitted (21-DEC-2017) Contact:Noriko Nakamura Aichi Prefectural
Institute of Public Health, Laboratory of Virology; 7-6 Nagare,
Tsujimachi, Kita-ku, Nagoya, Aichi 462-8576, Japan
FEATURES Location/Qualifiers
source 1..3432
/organism="Norovirus
Hu/GII/JP/2015/GII.P17-GII.17/AichiF289"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2015/GII.P17-GII.17/AichiF289"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:2066414"
/country="Japan:Aichi"
/collection_date="2015"
/note="genotype: GII.P17-GII.17"
gene <1..1640
/gene="POL"
CDS <1..1640
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BBC20639.1"
/translation="RGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYC
GAPILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQL
KPFTEPRGKPPNPDVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHV
RKNDYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRL
LWGSDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDA
DYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLP
SGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEK
LTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQL
YWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDF
YVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 1621..3243
/gene="VP1"
CDS 1621..3243
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBC20640.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 3243..>3432
/gene="VP2"
CDS 3243..>3432
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBC20641.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQL"
ORIGIN
1 aaaggggcaa tgaccttgtg gtcattgggg tgcacactgc agcagctcgt ggaggcaaca
61 cggtcatatg tgccacacag ggaagtgaag gtgaagccac tcttgaagga ggtgacaaca
121 agggtaccta ttgtggagcc cccattttgg gacctggcaa tgcaccaaaa ttgagcacaa
181 agacaaaatt ctggagatcc tctaacgcac cgcttccccc aggtacttat gaaccagcat
241 accttggtgg gagagacccg cgcgtgaagg gaggcccatc tctgcaacaa gttatgagag
301 accaacttaa acctttcaca gagcccagag ggaagccacc aaacccagat gtcttagagt
361 cagcaaagaa gactatcatc aatgttctgg aacaaaccat tgacccccct caaaagtggt
421 catatgccca agcttgtgca tccctcgaca agacaacctc cagtggatac ccgcaccacg
481 tccggaagaa tgactattgg agtggtgaat ccttcacagg aaaacttgca gatcaggctt
541 caaaagcaaa tctcatgtat gaggaaggca agcacatgca accagtttat accgcagcac
601 tcaaagacga gctcgtgaaa actgacaaaa tttatggcaa aatcaagaaa agactcctat
661 ggggttctga cctctccaca atgattcgat gcgccagagc atttggtggt ctcatggatg
721 aattcaaagc aaattgtatt acactcccta tcagagttgg tatgaatatg aatgaagatg
781 gtcccataat atttgagaaa cactccaggt acaggtacca ctatgatgct gattactccc
841 gctgggactc cacacaacag cgggcagtgc tggaagcggc acttgaaatc atggtgagat
901 tttctgctga gccacagctg gcacaaatag tggcagagga cctgctgtca ccaagtgtgg
961 ttgatgtggg cgatttcaaa atcgctatca atgaaggcct accatctggc gtgccttgca
1021 cctcacaatg gaattctatt gcccactggt tacttacctt gtgtgccctt tctgaagtga
1081 caggattagg tcctgacatc atacaagcta actccatgta ctctttctat ggtgatgatg
1141 agattgtgag cacagacata aaattggacc cagagaaatt gaccgcaaag ctcaaagaat
1201 atggccttaa acccactcgg cccgataaaa ctgaggggcc gttggtgatt agtgaggacc
1261 tgaatgggtt gactttcctc cgccgaacag tcacccgtga tccagcaggt tggtttggaa
1321 agttggacca aaactccatc ctcaggcagt tgtactggac aagaggaccc aaccatgaag
1381 accccagtga gaccatgata ccacacgcac aaagacctgt gcagctcatg gcactactag
1441 gagaatcctc cctacatgga ccctcatttt acagcaaggt tagcaaatta gtcatatctg
1501 aacttaaaga gggaggaatg gatttttatg tgcctagaca agagtcaatg ttcagatgga
1561 tgaggttctc agatctaagc acatgggagg gcgatcgcaa tctggctccc agttttgtga
1621 atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg tctcgtacca
1681 gagggcaaca acgagaccct tcccctagaa ccagttgcgg gcgcagctat agccgcaccc
1741 gtcactggcc aaaataatat aattgacccc tggattagaa caaattttgt gcaagcacca
1801 aatggagagt tcacagtgtc acccagaaac tctcctggag aaattttatt aaatttagag
1861 ttgggccctg atttgaaccc ttatttggct catttgtcaa ggatgtacaa tgggtatgct
1921 ggtggagtgg aagttcaggt tctcctggca gggaacgcgt tcactgccgg aaagatcctc
1981 ttcgccgccg tcccgccaaa tttcccagtg gaattcttaa gcccagccca gatcacaatg
2041 ctcccacatt taatagtaga tgttaggact cttgaaccaa ttatgatccc actccctgat
2101 gttaggaata cattcttcca ttatagtaac cagcctaaca gccgcatgag attagtggct
2161 atgctctata ccccactcag atctaatggc tcaggtgatg atgtctttac tgtctcttgc
2221 agggttttga ctaggcctac tcctgatttt gagttcactt atttagtgcc accttctgtt
2281 gaatctaaaa ctaagccttt ttccttacct attttaaccc tttctgagct cacaaattcg
2341 aggtttccag tccccatcga ttcgcttttc accgcccaga ataatgtgtt gcaggtgcag
2401 tgtcaaaatg gcaggtgtac acttgatggt gagttacaag gcacaaccca gttgctccca
2461 actggcatct gtgcattcag aggacgggtg acagcacaaa ttaaccaacg tgacaggtgg
2521 cacatgcaac tgcaaaacct caatggcaca acatatgacc caactgatga tgtgccagcc
2581 ccgctgggta cacctgactt caagggcgtc gtgtttggga tggtaagcca aagaaatgtg
2641 ggtaatgatg cgcctggctc aaccagagcc caacaggcgt gggtttcaac ctatagcccc
2701 caatttgtcc ctaaattagg ttctgtcaat cttagaatta gtgataatga tgacttccaa
2761 ttccagccga caaaattcac accagtgggc gtcaatgatg acgatgatgg ccacccgttc
2821 agacaatggg aactaccaaa ctattcaggg gagcttacct tgaatatgaa tcttgccccc
2881 ccagttgctc caaattttcc tggtgaacaa ttgttattct tcagatcttt cgtgccatgc
2941 tcaggaggtt acaaccaagg tattatagat tgtcttattc cccaagaatg gatccaacac
3001 ttctatcagg aatcagcacc ctcccagtca gacgtggccc taatcaggta tgtcaacccc
3061 gatacgggac gtacactgtt tgaagcaaaa ttgcacagat ctggttacat cactgtggct
3121 cactctggag actatcctct tgttgttccg gctaatggac actttagatt tgattcttgg
3181 gtaaatcagt tttactcact cgccccaatg ggaactggga atgggcgaag gagggctcag
3241 taatggctgg ggctttcatt gcaggattgg caggcgacat gctcacgtca tctgtgggct
3301 cccttgtgaa cgcaggggca aacgccatca accaaaagat agactttgaa aacaacaaac
3361 aactccagtc tgcttccttt cagcatgata aagagatgct ccaagcgcag gtgagggcaa
3421 ccaagcagct gc
//