Typing tool
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Complete norovirus genomes
LC349988 | GII.17 | ||
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GII.P17 |
ORF1: 1..1640 ORF2: 1621..3243 ORF3: 3243..3432LOCUS LC349988 3432 bp RNA linear VRL 22-JUN-2018 DEFINITION Norovirus Hu/GII/JP/2015/GII.P17-GII.17/AichiF1 POL, VP1, VP2 genes for nonstructural polyprotein, capsid protein VP1, capsid protein VP2, partial and complete cds. ACCESSION LC349988 VERSION LC349988.1 KEYWORDS . SOURCE Norovirus Hu/GII/JP/2015/GII.P17-GII.17/AichiF1 ORGANISM Norovirus Hu/GII/JP/2015/GII.P17-GII.17/AichiF1 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Nakamura,N. TITLE Molecular Epidemiology of Enteric Viruses in Pediatric Patients with Acute Gastroenteritis in Aichi Prefecture, Japan JOURNAL Unpublished REFERENCE 2 (bases 1 to 3432) AUTHORS Nakamura,N., Hata,M., Yasui,Y., Matsumoto,M. and Minagawa,H. TITLE Direct Submission JOURNAL Submitted (21-DEC-2017) Contact:Noriko Nakamura Aichi Prefectural Institute of Public Health, Laboratory of Virology; 7-6 Nagare, Tsujimachi, Kita-ku, Nagoya, Aichi 462-8576, Japan FEATURES Location/Qualifiers source 1..3432 /organism="Norovirus Hu/GII/JP/2015/GII.P17-GII.17/AichiF1" /mol_type="genomic RNA" /strain="Hu/GII/JP/2015/GII.P17-GII.17/AichiF1" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2066410" /country="Japan:Aichi" /collection_date="2015" /note="genotype: GII.P17-GII.17" gene <1..1640 /gene="POL" CDS <1..1640 /gene="POL" /codon_start=3 /product="nonstructural polyprotein" /protein_id="BBC20627.1" /translation="RGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYC GAPILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQL KPFTEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHV RKNDYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRL LWGSDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDA DYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLP SGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEK LTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQL YWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDF YVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 1621..3243 /gene="VP1" CDS 1621..3243 /gene="VP1" /codon_start=1 /product="capsid protein VP1" /protein_id="BBC20628.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 3243..>3432 /gene="VP2" CDS 3243..>3432 /gene="VP2" /codon_start=1 /product="capsid protein VP2" /protein_id="BBC20629.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQL" ORIGIN 1 aaaggggcaa tgaccttgtg gtcattgggg tgcacactgc agcagctcgt ggaggcaaca 61 cggtcatatg tgccacacag ggaagtgaag gtgaagccac tcttgaagga ggtgacaaca 121 agggtaccta ttgtggagcc cccattttgg gacctggcaa tgcaccaaaa ttgagcacaa 181 agacaaaatt ctggagatct tctaacgcac cgcttccccc aggtacttat gaaccagcat 241 accttggtgg gagagacccg cgcgtgaagg gaggcccatc tctgcaacaa gttatgagag 301 accaacttaa accttttaca gagcccagag ggaagccacc aaacccaaat gtcttagagt 361 cagcaaagaa gactatcatc aatgttctgg aacaaaccat tgacccccct caaaagtggt 421 catatgccca agcttgtgca tccctcgaca agacaacctc cagtggatac ccgcaccacg 481 tccggaagaa tgactattgg agtggtgaat ccttcacagg aaaacttgca gatcaggctt 541 caaaagcaaa cctcatgtat gaggaaggca agcacatgca accagtttac accgcagcac 601 tcaaagacga gctcgtgaaa actgacaaaa tttatggcaa aatcaagaaa agactcctgt 661 ggggttctga cctctccaca atgatccgat gcgccagagc atttggtggt ctcatggatg 721 aattcaaagc aaattgtatt acactcccta tcagagttgg tatgaatatg aatgaagatg 781 gtcccataat atttgagaaa cactccaggt acaggtacca ctatgatgct gattactccc 841 gctgggactc cacacaacag cgggcagtgc tggaagcggc acttgaaatc atggtgagat 901 tttctgctga gccacagctg gcacaaatag tggcagagga cctgctgtca ccaagtgtgg 961 ttgatgtggg cgatttcaaa atcgctatca atgaaggcct accatctggc gtgccttgca 1021 cctcacaatg gaattctatt gcccactggt tacttacctt gtgtgccctt tctgaagtga 1081 caggattagg tcctgacatc atacaagcta actccatgta ctctttctat ggtgatgatg 1141 agattgtgag cacagacata aaattggacc cagagaaatt gaccgcaaag ctcaaagaat 1201 atggccttaa acccactcgg cccgacaaaa ctgaggggcc gttggtgatt agtgaggacc 1261 tgaatgggtt gactttcctc cgccgaacag tcacccgtga tccagcaggt tggtttggaa 1321 agttggacca aaactccatc ctcaggcagt tgtactggac aagaggaccc aaccatgaag 1381 accccagtga gaccatgata ccacacgcac aaagacctgt gcagctcatg gcactactag 1441 gagaatcctc cctacatgga ccctcatttt acagcaaggt tagtaaatta gtcatatctg 1501 aacttaaaga gggaggaatg gatttttatg tgcccagaca agagtcaatg ttcagatgga 1561 tgaggttctc agatctaagc acatgggagg gcgatcgcaa tctggctccc agttttgtga 1621 atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg tctcgtacca 1681 gagggcaaca acgagaccct tcccctagaa ccagttgcgg gcgcagctat agccgcaccc 1741 gtcactggcc aaaataatat aattgacccc tggattagaa caaattttgt gcaagcacca 1801 aatggagagt tcacagtgtc acccagaaac tctcctggag aaattttatt aaatttagag 1861 ttgggccctg atttgaaccc ttatttggct catttgtcaa ggatgtacaa tgggtatgct 1921 ggtggagtgg aagttcaggt tctcctggca gggaacgcgt tcactgccgg aaagatcctc 1981 ttcgccgccg tcccgccaaa tttcccagtg gaattcttaa gcccagccca gatcacaatg 2041 ctcccacatt taatagtaga tgttaggact cttgaaccaa ttatgatccc actccctgat 2101 gttaggaata cattcttcca ttatagtaac cagcctaata gccgcatgag attagtggct 2161 atgctctata ccccactcag atctaatggc tcaggtgatg atgtctttac tgtctcttgc 2221 agggttttga ctaggcctac tcctgatttt gagttcactt atttagtgcc accttctgtt 2281 gaatctaaaa ctaagccttt ttccttacct attttaaccc tttctgagct cacaaattcg 2341 aggtttccag tccccatcga ttcgcttttc accgcccaga ataatgtgtt gcaggtgcag 2401 tgtcaaaatg gcaggtgtac acttgatggt gagttacaag gcacaaccca gttgctccca 2461 actggcatct gtgcattcag aggacgggtg acagcacaaa ttaaccaacg tgacaggtgg 2521 cacatgcaac tgcaaaacct caatggtaca acatatgacc caactgatga tgtgccagcc 2581 ccgctgggta cacctgactt caagggcgtc gtgtttggga tggtaagcca aagaaatgtg 2641 ggtaatgatg cgcctggctc aaccagagcc caacaggcgt gggtttcaac ctatagcccc 2701 caatttgtcc ccaaattagg ttctgtcaat cttagaatca gtgataatga tgatttccaa 2761 ttccagccga caaaattcac accagtgggc gtcaatgatg acgatgatgg ccacccgttc 2821 agacaatggg aactaccaaa ctattcaggg gagcttacct tgaatatgaa tcttgccccc 2881 ccagttgctc caaattttcc tggtgaacaa ttgttattct tcagatcttt cgtgccatgc 2941 tcaggaggtt acaaccaagg tattatagat tgtcttattc cccaagaatg gatccaacac 3001 ttctatcagg aatcagcacc ctcccagtca gacgtggccc taatcaggta tgtcaacccc 3061 gatacgggac gtacactgtt tgaagcaaaa ttgcacagat ctggttacat tactgtggct 3121 cactctggag actatcctct tgttgttccg gctaatggac actttagatt tgattcttgg 3181 gtaaatcagt tttactcact cgccccaatg ggaactggga atgggcgaag gagggctcag 3241 taatggctgg ggctttcatt gcaggattgg caggcgacat gctcacgtca tctgtgggct 3301 cccttgtgaa cgcaggggca aacgccatca accaaaagat agactttgaa aacaacaaac 3361 aactccagtc tgcttccttt cagcatgata aagagatgct ccaagcgcag gtgagggcaa 3421 ccaagcagct gc //