Typing tool
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Typing tool
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Complete norovirus genomes
| LC342059 | GII.12 | |
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| GII.PNA7 |
ORF1: 11..5104
ORF2: 5085..6692
ORF3: 6692..7471
LOCUS LC342059 7557 bp RNA linear VRL 02-APR-2019
DEFINITION Norovirus GII Hu/JP/1999/GII.PNAe-GII.12/No35-Saitama-99-1 genomic
RNA, complete genome.
ACCESSION LC342059
VERSION LC342059.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Sano,D., Utagawa,E. and Katayama,K.
TITLE Identification of novel norovirus polymerase genotypes from human
fecal samples collected before year 2000
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7557)
AUTHORS Utagawa,E., Katayama,K. and Doan,H.Y.
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2017) Contact:Etsuko Utagawa Kitasato University,
Kitasato Institute for Life Sciences, Laboratory of Viral Infection
I; 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan
FEATURES Location/Qualifiers
source 1..7557
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/JP/1999/GII.PNAe-GII.12/No35-Saitama-99-1"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Japan:Saitama"
/collection_date="1999"
/note="genotype: GII"
CDS 11..5104
/codon_start=1
/product="polyprotein"
/protein_id="BBB94175.1"
/translation="MASNDASAAAAATSNNDIEKSSSDGVLSSMAVTFKRALGARPKQ
PAPRDKPPKPPRPPTPELVKKIPPPPPNGEDEPVISYSAKDGVSGLPELTTVRQPDVH
STAFSVPPLDQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLA
KVEMTPLSLYWRPVYTPQYLIAPDTLKKLHGELFPYTAFDNNCYAFCCWVLDLNDCWL
SRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKLR
PLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPQDLA
VELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKELGAYGLEILKLVMKWFFPKK
EEANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVIMISGKPGIGKTHLARELAK
KIAATLSGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPVHDALRLQELADTCPL
TLNCDRIENKGKVFDSDTIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWRSAFSPDFSHIKMQLAPQGGFDKNGNTPHGKGVMKSLTMGSLIARASG
LLHERLDEYELQGPTLTTFNFDRNKIHAFRQLAAENKYGLVDTMRVGGQLKGVKTMPE
LKQALKNISIRRCQIVYGGCTYILESDGKGNVKVEKVQSTTVQTNNEMAGALHHLRCA
RIRYYVKCVQESIYSILQIAGAAFVTTRIVKRMNIQSLWSKPPVGDADETATEEGCPK
PKDDEEFIVSSDDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIKEERNGKY
SIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
SEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPPGAQEFFGVSVKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
ATLLIKRPTGELMPLAARMGTQATMKIQGRMVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEAILEGGDNKGTYCGAPILGPG
NAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPKPNVLEAAKKTIINVLEQTIDPPQRWSYAQACASLDKTTSSGHPHHIRKNDCWNG
ETFTGKLADQASRANLMYEEGKSMTPVYTGALKDELVKTDKIYGSIKKRLLWGSDLAT
MIRCARAFGGLMDELKAHCITLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDST
QQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREY
GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNH
EDPFETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVITELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5085..6692
/gene="VP1"
CDS 5085..6692
/gene="VP1"
/codon_start=1
/product="viral protein 1"
/protein_id="BBB94176.1"
/translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ
NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
VRNSFFHYNQQNESRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TIESKTKPFTLPILTIGELTNSRFPAPIDELYTSPNESLVVQPQNGRCALDGELQGTT
QLLPTAICSFRGRINQKVSGENHVWNMQVTNTNGTPFDPTEDVPAPLGTPDFSGKLFG
VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEEDDVHINQPTKFTPVGLFEH
EDFSQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ
EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6692..7471
/gene="VP2"
CDS 6692..7471
/gene="VP2"
/codon_start=1
/product="viral protein 2"
/protein_id="BBB94177.1"
/translation="MAGAFIAGLAGDIVTNSVGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQAEMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRHWAPGATRTTAFSGGFTSASHARTVDLTKRTSATPAPMPVSRPSSTVSTVSTRSTL
ISGSSNPSSSARSSSSVSSQPTSSSSRTSEWVRSQNRVLEPYMRGALHTAYVTPPSSR
ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQA"
ORIGIN
1 gtgactgaag atggcgtcta acgacgcttc cgctgccgct gctgctacca gcaacaacga
61 catcgaaaaa tcttcaagtg acggagtact atctagtatg gctgtcactt ttaaacgagc
121 cctcggggcc cggcctaaac agccggcccc gagggacaaa ccaccaaaac ccccacgacc
181 acctacccca gagctggtca aaaagatccc accccctccg cctaacggag aggatgaacc
241 agttatttcg tacagcgcca aggatggtgt gtctggcttg cctgaactca caacagttag
301 gcaaccggat gtgcactcta cggcgttcag tgtcccccca ctcgaccaga gggagaatag
361 ggacgccaaa gaaccactaa ctggcaccat cctggagatg tgggatgggg agatttatca
421 ttatggcctg tacgtggaac gagggctagt gcttggtgta cacaaacccc cagcggcgat
481 tagcctcgcc aaggttgaga tgacaccctt gtctctgtac tggagaccag tgtacacccc
541 gcaatacctc atagcccctg acacgctcaa aaagctgcat ggtgagttat tcccctacac
601 agcctttgac aacaactgct atgctttctg ttgttgggtc ctagacctaa acgactgctg
661 gctgagcagg agaatgattc agaggacgac cggcttcttc cgaccatacc aagagtggaa
721 tagaaagcct ctccctacta tggatgactc caagctgaaa aaggtggcca acatattcct
781 gtgtgcttta tcatcattgt tcaccagacc cataaaggac ataataggta agttgaggcc
841 cctcaacatc ctcaacatac tagcatcatg tgattggact tttgcaggca tagtggaatc
901 attgatcctc ctggctgaac tctttggagt gttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactaggtg actacgaact acaggggccc caagacctcg ctgtggaact
1021 cgtgcccatt gttatggggg ggataggttt ggtgctggga ttcaccaagg agaaaatcgg
1081 taagatgcta tcatctgctg cctccacgct gagggcctgc aaagaacttg gagcctacgg
1141 actggagata ctaaaactgg tcatgaaatg gttcttccca aagaaggagg aggcaaacga
1201 actggcaatg gtaagagcca ttgaggacgc tgttcttgac cttgaggcaa ttgagaacaa
1261 ccacatgaca gccttgctca aggacaagga cagcctagca acttacatga ggaccctcga
1321 cttagaggaa gagaaggcca gaaagctttc tactaagtct gcttcacctg acattgtggg
1381 cacaattaac gcccttttgg caagaattgc agctgctcgt tccctcgtgc atagagccaa
1441 agaagaacta tccagcaggc caaggccagt tgttattatg atctcaggca aaccaggtat
1501 tgggaagacc catctggcca gggagttggc aaagaagatc gccgctaccc tatcaggaga
1561 ccagagggtg ggtcttatcc cacgaaatgg agtcgaccac tgggacgctt ataaaggtga
1621 gagagtcgtc ctttgggatg actacggaat gagcaaccct gtccatgatg ctcttagact
1681 ccaagagctt gctgacacct gccctctaac actaaattgt gacaggatcg aaaacaaagg
1741 caaggttttt gatagtgata ctataatcat caccaccaat ttggccaacc cggctccact
1801 ggactatgtc aactttgaag cgtgctcaag gcgcatcgac ttcctcgtgt atgccgaggc
1861 ccctgaagtt gaaaaggcaa aacgcgactt tccagggcag ccggacatgt ggagaagtgc
1921 cttcagtcct gacttttcac acatcaaaat gcaacttgct ccccaaggtg gcttcgacaa
1981 gaacggcaac accccgcatg gcaaaggagt catgaaatct ctaaccatgg gttctctcat
2041 cgcccgtgcc tcagggctcc tccatgaaag actggatgag tacgagttgc agggacccac
2101 tctcacaacc ttcaacttcg accgcaacaa aatacatgcc ttcagacagc tcgctgccga
2161 aaacaagtat ggattggtgg acacaatgcg ggttgggggc caactcaagg gagttaagac
2221 catgccagaa cttaagcaag ctctcaaaaa catttcaatc agaaggtgcc agatagtcta
2281 tgggggttgc acctatatac tggaatctga tggcaaaggc aatgtgaagg tcgaaaaggt
2341 gcaaagcact acggtgcaga ccaacaatga gatggccggc gcactacacc acctaaggtg
2401 tgccaggatc agatactacg tcaagtgtgt acaggaatcc atctattcca tcctccaaat
2461 cgctggggct gcatttgtga caacgcgcat tgtcaagcgc atgaacatac agagtctctg
2521 gtccaaacca ccggtgggag acgcagacga gacggccact gaagaaggct gcccaaagcc
2581 caaagatgac gaagagttca tcgtctcgtc cgatgatatt aaagctgagg gcaagaaggg
2641 gaagaacaag tctggccgag gcaagaaaca cacggccttc tcaagcaagg gcctcagcga
2701 tgaagagtat gatgagtaca agagaattaa ggaggagaga aacggcaagt actctataga
2761 agaatacctt caggacagag ataagtacta tgaggaggtg gccatagcca gagcaactga
2821 ggaggacttc tgtgaggaag aggaggccaa aatccggcaa agaatattta gaccaactag
2881 aaaacaacgc aaggaggaac gcgcctctct cggtctcgtt acaggctcag agatcagaaa
2941 gcggaaccca gatgacttca aacccaaagg aaaattgtgg gccgacgatg acaggagcgt
3001 cgactacaat gagaaactca gttttgaagc cccaccaagc atttggtcta gaatagtcaa
3061 ctttggttct ggctggggat tttgggtctc ccccagctta ttcatcacat caacccatgt
3121 catacccccg ggcgcccagg agttctttgg tgtgtccgtc aaacaaattc agatccataa
3181 atcgggagag ttctgccgtc tgagattccc gaaaccaatt aggactgatg tgactggtat
3241 gatattagaa gaaggagccc cagaaggaac tgtggccaca ctgctcatca agaggccgac
3301 tggtgaactc atgcccctag cagccaggat gggcacccag gcaacaatga agatccaggg
3361 tcgcatggtt gggggccaaa tgggcatgct actaacaggg tccaacgcta agagcatgga
3421 cttgggaaca acaccaggtg actgtggctg tccttacatc tacaaaagag gaaatgacta
3481 tattgtcatc ggagtccaca cagcagccgc ccgcggtgga aacacagtca tatgtgcaac
3541 tcaggggagc gaaggtgagg ccatacttga aggaggcgac aacaaaggga cctactgtgg
3601 tgcaccgatc ctaggccctg gcaacgcccc caagctcagc acaaaaacaa aattttggag
3661 atcttccact gcaccactcc caccgggcac ttatgagcca gcttacctcg gtggcaaaga
3721 ccccagggtt aaaggtgggc cttccctaca acaagttatg agagaccagc tgaagccgtt
3781 caccgagccg aggggcaaac cacccaagcc aaatgtatta gaagcagcaa agaagaccat
3841 cataaatgtg ttggagcaga caatagaccc cccccaaagg tggtcgtacg cacaagcgtg
3901 cgcatccctc gacaaaacca catccagtgg ccaccctcac cacattcgga aaaatgactg
3961 ttggaatgga gaaaccttca caggcaaatt ggcagatcaa gcttcaagag ccaacttgat
4021 gtacgaggag ggaaaaagca tgaccccagt gtacaccgga gcgctcaagg atgaattagt
4081 gaaaacagat aaaatatatg gctcaatcaa gaagaggctc ctatggggtt cagacctggc
4141 aacaatgatc cggtgcgcac gggcgtttgg ggggctgatg gacgaactta aggcccactg
4201 catcacattg cctgttaggg taggcatgaa catgaatgag gatggcccta taatatttga
4261 gaaacattct aggtacagat accattatga tgcagactac tcccgctggg actcaacaca
4321 acagagggcg gtgttagctg cagccctaga aattatggtc aaattctcac cagaaccaca
4381 tttggctcag atagttgcag aagacctttt gtcccccagt gtgatggatg tcggtgactt
4441 caagatatcc atcaatgaag gactgccttc gggagtgccg tgcacatcgc agtggaattc
4501 cattgcccac tggctcctca ccctctgtgc actttccgag gtgacagacc tgtcacctga
4561 cattatccaa gccaattcct tgttctcctt ctacggtgat gatgaaattg tgagcactga
4621 cattaaattg gacccagaaa agctgacagc aaaactgagg gagtacggac tcaaacctac
4681 ccgacctgac aaaactgaag gacctttaat catttctgaa gacttaaatg gcctgacctt
4741 cttacggagg actgtgactc gagacccagc tggttggttt gggaaattag accagagctc
4801 aatacttaga caaatgtact ggaccagggg ccccaatcat gaagaccctt ttgaaacaat
4861 gataccacat tcccaaagac ccatccagct aatgtcgctc ttgggcgaag cagccctaca
4921 tggcccatca ttctacagta aaatcagcaa attggtcatc acagagttaa aggaaggtgg
4981 catggatttt tacgtgccca ggcaagagcc catgttcagg tggatgaggt tctcagactt
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccgc tccatctaat gatggtgcag ccggtctcgt accagaggct aacaatgaga
5161 ccatggcact tgaaccggtg gctggggctt caatagccgc cccactcacc ggccaaaaca
5221 atgttataga cccctggatt agattaaatt ttgtgcaggc tcccaatgga gagttcacgg
5281 tttcaccccg taactcgcct ggggaaatcc tactaaattt ggaattgggc cctgaactga
5341 atccatacct ggcacacctt tctagaatgt acaatggtta tgcaggtggg gttgaggtgc
5401 aagtactact ggctgggaac gcgttcacag ctggaaaact ggtgtttgcc gcagttcccc
5461 ctcactttcc attagaaaat ataagccctg gccaaataac tatgttccct catgtaatta
5521 ttgatgttag gactttagaa ccagttcttt tgcccctccc agatgtcagg aatagtttct
5581 ttcattacaa tcagcaaaat gaatcgcgga tgagacttgt agcaatgctt tatactcctc
5641 ttagatctaa tggctctggt gatgatgtgt tcactgtctc ttgcagggtg cttactcgac
5701 cttcccctga ttttgatttt aactatttgg ttccccctac tattgagtct aaaactaaac
5761 ccttcacact ccccatcttg actatagggg agctaaccaa ttccaggttc cctgcgccca
5821 tagatgagct ctacaccagt cccaatgaga gtttggtggt gcagccccaa aacgggagat
5881 gcgcgctgga cggggagttg cagggcacga ctcagctcct ccccacggcg atctgctcgt
5941 tcaggggtcg aatcaaccag aaggtaagtg gagagaacca tgtctggaat atgcaggtca
6001 ccaacaccaa cggaacccct tttgatccaa cagaagatgt cccggcccct ctaggcactc
6061 cagacttctc tggcaagctc tttggtgttt tgagccagag ggaccacgat aatgcatgta
6121 ggagccatga tgcagtgatt gcaaccaact ctgccaaatt caccccaaaa ttgggcgcta
6181 tacaaattgg cacatgggaa gaagatgatg tacacatcaa ccaacctacc aaatttactc
6241 cagttggctt atttgaacat gaagatttca gtcagtggac actccccaac tattctggtg
6301 ccttaacact taatatggga ttagcccctc ctgttgcccc cacctttcct ggtgaacaaa
6361 ttctcttctt tagatcccac attcctctta aaggaggtgt agcagaccca gttattgatt
6421 gtcttttgcc ccaggagtgg attcaacatc tttaccaaga gtcagcccct tcacaatctg
6481 atgtagcact gattaggttc acaaatccag acacaggacg tgttctattt gaggcaaaat
6541 tacataggag tggttacatt acagtggcca acactggtag cagaccgatt gtggtaccag
6601 ctaacggtta cttcagattt gactcttggg ttaatcagtt ctattctctc gcccccatgg
6661 gaactgggaa cgggcgcagg agggtgcagt aatggctgga gcttttatag cagggcttgc
6721 tggtgacata gtcaccaaca gcgttggctc acttgtgaac gccggggcta atgcaataaa
6781 tcaaaaagta gactttgaaa ataacaaaca attacaacag gcttctttca atcatgacaa
6841 agaaatgctg caagctcaaa tccaggctac caaacagcta caggctgaaa tgattgcaat
6901 cagacaaggg gtgttgaccg cgggcggctt ctcccccact gatgcagcaa gaggggcagt
6961 caatgcaccc atgactcagg tcttggactg gaacgggact aggcattggg cccccggtgc
7021 cacaagaact accgctttct ccggtgggtt caccagtgct tctcatgcca gaacagttga
7081 cttgaccaag agaacatcag ccacgccagc ccctatgcct gtttctagac ccagttctac
7141 tgtctccact gtctccaccc gctcaacctt gattagcggg tcctctaacc cttcttcttc
7201 agctaggagt tcctctagcg tctcttccca acccacctcc tcctcctctc ggaccagtga
7261 gtgggtgcgt agtcaaaaca gggtgctgga gccttatatg agaggggcgc tgcacacagc
7321 atatgtgacg cccccctcta gtagggcttc tagtaatggc acagtctcaa ccgtgccaaa
7381 agaggttttg gactcctgga catctgcgtt caacacccgc agacaaccgc tattcgctca
7441 tctccgtcgg agaggggagt cacaagctta gtgaaaagat gatcttttct tcctttcttt
7501 tgaaaatttc tgtcttttaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//