![]() |
![]() |
![]() |
![]() |
|
Typing tool
|
Complete norovirus genomes
LC342059 | GII.12 | ![]() |
|
---|---|---|---|
GII.PNA7 |
ORF1: 11..5104 ORF2: 5085..6692 ORF3: 6692..7471LOCUS LC342059 7557 bp RNA linear VRL 02-APR-2019 DEFINITION Norovirus GII Hu/JP/1999/GII.PNAe-GII.12/No35-Saitama-99-1 genomic RNA, complete genome. ACCESSION LC342059 VERSION LC342059.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sano,D., Utagawa,E. and Katayama,K. TITLE Identification of novel norovirus polymerase genotypes from human fecal samples collected before year 2000 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7557) AUTHORS Utagawa,E., Katayama,K. and Doan,H.Y. TITLE Direct Submission JOURNAL Submitted (08-DEC-2017) Contact:Etsuko Utagawa Kitasato University, Kitasato Institute for Life Sciences, Laboratory of Viral Infection I; 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan FEATURES Location/Qualifiers source 1..7557 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/JP/1999/GII.PNAe-GII.12/No35-Saitama-99-1" /host="Homo sapiens" /db_xref="taxon:122929" /geo_loc_name="Japan:Saitama" /collection_date="1999" /note="genotype: GII" CDS 11..5104 /codon_start=1 /product="polyprotein" /protein_id="BBB94175.1" /translation="MASNDASAAAAATSNNDIEKSSSDGVLSSMAVTFKRALGARPKQ PAPRDKPPKPPRPPTPELVKKIPPPPPNGEDEPVISYSAKDGVSGLPELTTVRQPDVH STAFSVPPLDQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLA KVEMTPLSLYWRPVYTPQYLIAPDTLKKLHGELFPYTAFDNNCYAFCCWVLDLNDCWL SRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKLR PLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPQDLA VELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKELGAYGLEILKLVMKWFFPKK EEANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKS ASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVIMISGKPGIGKTHLARELAK KIAATLSGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPVHDALRLQELADTCPL TLNCDRIENKGKVFDSDTIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK RDFPGQPDMWRSAFSPDFSHIKMQLAPQGGFDKNGNTPHGKGVMKSLTMGSLIARASG LLHERLDEYELQGPTLTTFNFDRNKIHAFRQLAAENKYGLVDTMRVGGQLKGVKTMPE LKQALKNISIRRCQIVYGGCTYILESDGKGNVKVEKVQSTTVQTNNEMAGALHHLRCA RIRYYVKCVQESIYSILQIAGAAFVTTRIVKRMNIQSLWSKPPVGDADETATEEGCPK PKDDEEFIVSSDDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIKEERNGKY SIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG SEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSL FITSTHVIPPGAQEFFGVSVKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV ATLLIKRPTGELMPLAARMGTQATMKIQGRMVGGQMGMLLTGSNAKSMDLGTTPGDCG CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEAILEGGDNKGTYCGAPILGPG NAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG KPPKPNVLEAAKKTIINVLEQTIDPPQRWSYAQACASLDKTTSSGHPHHIRKNDCWNG ETFTGKLADQASRANLMYEEGKSMTPVYTGALKDELVKTDKIYGSIKKRLLWGSDLAT MIRCARAFGGLMDELKAHCITLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDST QQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQ WNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREY GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNH EDPFETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVITELKEGGMDFYVPRQEPM FRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5085..6692 /gene="VP1" CDS 5085..6692 /gene="VP1" /codon_start=1 /product="viral protein 1" /protein_id="BBB94176.1" /translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD VRNSFFHYNQQNESRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TIESKTKPFTLPILTIGELTNSRFPAPIDELYTSPNESLVVQPQNGRCALDGELQGTT QLLPTAICSFRGRINQKVSGENHVWNMQVTNTNGTPFDPTEDVPAPLGTPDFSGKLFG VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEEDDVHINQPTKFTPVGLFEH EDFSQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6692..7471 /gene="VP2" CDS 6692..7471 /gene="VP2" /codon_start=1 /product="viral protein 2" /protein_id="BBB94177.1" /translation="MAGAFIAGLAGDIVTNSVGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQIQATKQLQAEMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRHWAPGATRTTAFSGGFTSASHARTVDLTKRTSATPAPMPVSRPSSTVSTVSTRSTL ISGSSNPSSSARSSSSVSSQPTSSSSRTSEWVRSQNRVLEPYMRGALHTAYVTPPSSR ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQA" ORIGIN 1 gtgactgaag atggcgtcta acgacgcttc cgctgccgct gctgctacca gcaacaacga 61 catcgaaaaa tcttcaagtg acggagtact atctagtatg gctgtcactt ttaaacgagc 121 cctcggggcc cggcctaaac agccggcccc gagggacaaa ccaccaaaac ccccacgacc 181 acctacccca gagctggtca aaaagatccc accccctccg cctaacggag aggatgaacc 241 agttatttcg tacagcgcca aggatggtgt gtctggcttg cctgaactca caacagttag 301 gcaaccggat gtgcactcta cggcgttcag tgtcccccca ctcgaccaga gggagaatag 361 ggacgccaaa gaaccactaa ctggcaccat cctggagatg tgggatgggg agatttatca 421 ttatggcctg tacgtggaac gagggctagt gcttggtgta cacaaacccc cagcggcgat 481 tagcctcgcc aaggttgaga tgacaccctt gtctctgtac tggagaccag tgtacacccc 541 gcaatacctc atagcccctg acacgctcaa aaagctgcat ggtgagttat tcccctacac 601 agcctttgac aacaactgct atgctttctg ttgttgggtc ctagacctaa acgactgctg 661 gctgagcagg agaatgattc agaggacgac cggcttcttc cgaccatacc aagagtggaa 721 tagaaagcct ctccctacta tggatgactc caagctgaaa aaggtggcca acatattcct 781 gtgtgcttta tcatcattgt tcaccagacc cataaaggac ataataggta agttgaggcc 841 cctcaacatc ctcaacatac tagcatcatg tgattggact tttgcaggca tagtggaatc 901 attgatcctc ctggctgaac tctttggagt gttctggaca cccccagatg tgtctgcgat 961 gatcgccccc ttactaggtg actacgaact acaggggccc caagacctcg ctgtggaact 1021 cgtgcccatt gttatggggg ggataggttt ggtgctggga ttcaccaagg agaaaatcgg 1081 taagatgcta tcatctgctg cctccacgct gagggcctgc aaagaacttg gagcctacgg 1141 actggagata ctaaaactgg tcatgaaatg gttcttccca aagaaggagg aggcaaacga 1201 actggcaatg gtaagagcca ttgaggacgc tgttcttgac cttgaggcaa ttgagaacaa 1261 ccacatgaca gccttgctca aggacaagga cagcctagca acttacatga ggaccctcga 1321 cttagaggaa gagaaggcca gaaagctttc tactaagtct gcttcacctg acattgtggg 1381 cacaattaac gcccttttgg caagaattgc agctgctcgt tccctcgtgc atagagccaa 1441 agaagaacta tccagcaggc caaggccagt tgttattatg atctcaggca aaccaggtat 1501 tgggaagacc catctggcca gggagttggc aaagaagatc gccgctaccc tatcaggaga 1561 ccagagggtg ggtcttatcc cacgaaatgg agtcgaccac tgggacgctt ataaaggtga 1621 gagagtcgtc ctttgggatg actacggaat gagcaaccct gtccatgatg ctcttagact 1681 ccaagagctt gctgacacct gccctctaac actaaattgt gacaggatcg aaaacaaagg 1741 caaggttttt gatagtgata ctataatcat caccaccaat ttggccaacc cggctccact 1801 ggactatgtc aactttgaag cgtgctcaag gcgcatcgac ttcctcgtgt atgccgaggc 1861 ccctgaagtt gaaaaggcaa aacgcgactt tccagggcag ccggacatgt ggagaagtgc 1921 cttcagtcct gacttttcac acatcaaaat gcaacttgct ccccaaggtg gcttcgacaa 1981 gaacggcaac accccgcatg gcaaaggagt catgaaatct ctaaccatgg gttctctcat 2041 cgcccgtgcc tcagggctcc tccatgaaag actggatgag tacgagttgc agggacccac 2101 tctcacaacc ttcaacttcg accgcaacaa aatacatgcc ttcagacagc tcgctgccga 2161 aaacaagtat ggattggtgg acacaatgcg ggttgggggc caactcaagg gagttaagac 2221 catgccagaa cttaagcaag ctctcaaaaa catttcaatc agaaggtgcc agatagtcta 2281 tgggggttgc acctatatac tggaatctga tggcaaaggc aatgtgaagg tcgaaaaggt 2341 gcaaagcact acggtgcaga ccaacaatga gatggccggc gcactacacc acctaaggtg 2401 tgccaggatc agatactacg tcaagtgtgt acaggaatcc atctattcca tcctccaaat 2461 cgctggggct gcatttgtga caacgcgcat tgtcaagcgc atgaacatac agagtctctg 2521 gtccaaacca ccggtgggag acgcagacga gacggccact gaagaaggct gcccaaagcc 2581 caaagatgac gaagagttca tcgtctcgtc cgatgatatt aaagctgagg gcaagaaggg 2641 gaagaacaag tctggccgag gcaagaaaca cacggccttc tcaagcaagg gcctcagcga 2701 tgaagagtat gatgagtaca agagaattaa ggaggagaga aacggcaagt actctataga 2761 agaatacctt caggacagag ataagtacta tgaggaggtg gccatagcca gagcaactga 2821 ggaggacttc tgtgaggaag aggaggccaa aatccggcaa agaatattta gaccaactag 2881 aaaacaacgc aaggaggaac gcgcctctct cggtctcgtt acaggctcag agatcagaaa 2941 gcggaaccca gatgacttca aacccaaagg aaaattgtgg gccgacgatg acaggagcgt 3001 cgactacaat gagaaactca gttttgaagc cccaccaagc atttggtcta gaatagtcaa 3061 ctttggttct ggctggggat tttgggtctc ccccagctta ttcatcacat caacccatgt 3121 catacccccg ggcgcccagg agttctttgg tgtgtccgtc aaacaaattc agatccataa 3181 atcgggagag ttctgccgtc tgagattccc gaaaccaatt aggactgatg tgactggtat 3241 gatattagaa gaaggagccc cagaaggaac tgtggccaca ctgctcatca agaggccgac 3301 tggtgaactc atgcccctag cagccaggat gggcacccag gcaacaatga agatccaggg 3361 tcgcatggtt gggggccaaa tgggcatgct actaacaggg tccaacgcta agagcatgga 3421 cttgggaaca acaccaggtg actgtggctg tccttacatc tacaaaagag gaaatgacta 3481 tattgtcatc ggagtccaca cagcagccgc ccgcggtgga aacacagtca tatgtgcaac 3541 tcaggggagc gaaggtgagg ccatacttga aggaggcgac aacaaaggga cctactgtgg 3601 tgcaccgatc ctaggccctg gcaacgcccc caagctcagc acaaaaacaa aattttggag 3661 atcttccact gcaccactcc caccgggcac ttatgagcca gcttacctcg gtggcaaaga 3721 ccccagggtt aaaggtgggc cttccctaca acaagttatg agagaccagc tgaagccgtt 3781 caccgagccg aggggcaaac cacccaagcc aaatgtatta gaagcagcaa agaagaccat 3841 cataaatgtg ttggagcaga caatagaccc cccccaaagg tggtcgtacg cacaagcgtg 3901 cgcatccctc gacaaaacca catccagtgg ccaccctcac cacattcgga aaaatgactg 3961 ttggaatgga gaaaccttca caggcaaatt ggcagatcaa gcttcaagag ccaacttgat 4021 gtacgaggag ggaaaaagca tgaccccagt gtacaccgga gcgctcaagg atgaattagt 4081 gaaaacagat aaaatatatg gctcaatcaa gaagaggctc ctatggggtt cagacctggc 4141 aacaatgatc cggtgcgcac gggcgtttgg ggggctgatg gacgaactta aggcccactg 4201 catcacattg cctgttaggg taggcatgaa catgaatgag gatggcccta taatatttga 4261 gaaacattct aggtacagat accattatga tgcagactac tcccgctggg actcaacaca 4321 acagagggcg gtgttagctg cagccctaga aattatggtc aaattctcac cagaaccaca 4381 tttggctcag atagttgcag aagacctttt gtcccccagt gtgatggatg tcggtgactt 4441 caagatatcc atcaatgaag gactgccttc gggagtgccg tgcacatcgc agtggaattc 4501 cattgcccac tggctcctca ccctctgtgc actttccgag gtgacagacc tgtcacctga 4561 cattatccaa gccaattcct tgttctcctt ctacggtgat gatgaaattg tgagcactga 4621 cattaaattg gacccagaaa agctgacagc aaaactgagg gagtacggac tcaaacctac 4681 ccgacctgac aaaactgaag gacctttaat catttctgaa gacttaaatg gcctgacctt 4741 cttacggagg actgtgactc gagacccagc tggttggttt gggaaattag accagagctc 4801 aatacttaga caaatgtact ggaccagggg ccccaatcat gaagaccctt ttgaaacaat 4861 gataccacat tcccaaagac ccatccagct aatgtcgctc ttgggcgaag cagccctaca 4921 tggcccatca ttctacagta aaatcagcaa attggtcatc acagagttaa aggaaggtgg 4981 catggatttt tacgtgccca ggcaagagcc catgttcagg tggatgaggt tctcagactt 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 gtgacgccgc tccatctaat gatggtgcag ccggtctcgt accagaggct aacaatgaga 5161 ccatggcact tgaaccggtg gctggggctt caatagccgc cccactcacc ggccaaaaca 5221 atgttataga cccctggatt agattaaatt ttgtgcaggc tcccaatgga gagttcacgg 5281 tttcaccccg taactcgcct ggggaaatcc tactaaattt ggaattgggc cctgaactga 5341 atccatacct ggcacacctt tctagaatgt acaatggtta tgcaggtggg gttgaggtgc 5401 aagtactact ggctgggaac gcgttcacag ctggaaaact ggtgtttgcc gcagttcccc 5461 ctcactttcc attagaaaat ataagccctg gccaaataac tatgttccct catgtaatta 5521 ttgatgttag gactttagaa ccagttcttt tgcccctccc agatgtcagg aatagtttct 5581 ttcattacaa tcagcaaaat gaatcgcgga tgagacttgt agcaatgctt tatactcctc 5641 ttagatctaa tggctctggt gatgatgtgt tcactgtctc ttgcagggtg cttactcgac 5701 cttcccctga ttttgatttt aactatttgg ttccccctac tattgagtct aaaactaaac 5761 ccttcacact ccccatcttg actatagggg agctaaccaa ttccaggttc cctgcgccca 5821 tagatgagct ctacaccagt cccaatgaga gtttggtggt gcagccccaa aacgggagat 5881 gcgcgctgga cggggagttg cagggcacga ctcagctcct ccccacggcg atctgctcgt 5941 tcaggggtcg aatcaaccag aaggtaagtg gagagaacca tgtctggaat atgcaggtca 6001 ccaacaccaa cggaacccct tttgatccaa cagaagatgt cccggcccct ctaggcactc 6061 cagacttctc tggcaagctc tttggtgttt tgagccagag ggaccacgat aatgcatgta 6121 ggagccatga tgcagtgatt gcaaccaact ctgccaaatt caccccaaaa ttgggcgcta 6181 tacaaattgg cacatgggaa gaagatgatg tacacatcaa ccaacctacc aaatttactc 6241 cagttggctt atttgaacat gaagatttca gtcagtggac actccccaac tattctggtg 6301 ccttaacact taatatggga ttagcccctc ctgttgcccc cacctttcct ggtgaacaaa 6361 ttctcttctt tagatcccac attcctctta aaggaggtgt agcagaccca gttattgatt 6421 gtcttttgcc ccaggagtgg attcaacatc tttaccaaga gtcagcccct tcacaatctg 6481 atgtagcact gattaggttc acaaatccag acacaggacg tgttctattt gaggcaaaat 6541 tacataggag tggttacatt acagtggcca acactggtag cagaccgatt gtggtaccag 6601 ctaacggtta cttcagattt gactcttggg ttaatcagtt ctattctctc gcccccatgg 6661 gaactgggaa cgggcgcagg agggtgcagt aatggctgga gcttttatag cagggcttgc 6721 tggtgacata gtcaccaaca gcgttggctc acttgtgaac gccggggcta atgcaataaa 6781 tcaaaaagta gactttgaaa ataacaaaca attacaacag gcttctttca atcatgacaa 6841 agaaatgctg caagctcaaa tccaggctac caaacagcta caggctgaaa tgattgcaat 6901 cagacaaggg gtgttgaccg cgggcggctt ctcccccact gatgcagcaa gaggggcagt 6961 caatgcaccc atgactcagg tcttggactg gaacgggact aggcattggg cccccggtgc 7021 cacaagaact accgctttct ccggtgggtt caccagtgct tctcatgcca gaacagttga 7081 cttgaccaag agaacatcag ccacgccagc ccctatgcct gtttctagac ccagttctac 7141 tgtctccact gtctccaccc gctcaacctt gattagcggg tcctctaacc cttcttcttc 7201 agctaggagt tcctctagcg tctcttccca acccacctcc tcctcctctc ggaccagtga 7261 gtgggtgcgt agtcaaaaca gggtgctgga gccttatatg agaggggcgc tgcacacagc 7321 atatgtgacg cccccctcta gtagggcttc tagtaatggc acagtctcaa ccgtgccaaa 7381 agaggttttg gactcctgga catctgcgtt caacacccgc agacaaccgc tattcgctca 7441 tctccgtcgg agaggggagt cacaagctta gtgaaaagat gatcttttct tcctttcttt 7501 tgaaaatttc tgtcttttaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa //