Typing tool
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Typing tool
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Complete norovirus genomes
| LC342058 | GI.6 | |
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| GI.PNA4 |
ORF1: 1..5358
ORF2: 5342..6964
ORF3: 6964..7593
LOCUS LC342058 7685 bp RNA linear VRL 02-APR-2019
DEFINITION Norovirus GI Hu/JP/1998/GI.PNAd-GI.6/No24-Saitama-98-26 genomic
RNA, complete genome.
ACCESSION LC342058
VERSION LC342058.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Sano,D., Utagawa,E. and Katayama,K.
TITLE Identification of novel norovirus polymerase genotypes from human
fecal samples collected before year 2000
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7685)
AUTHORS Utagawa,E., Katayama,K. and Doan,H.Y.
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2017) Contact:Etsuko Utagawa Kitasato University,
Kitasato Institute for Life Sciences, Laboratory of Viral Infection
I; 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan
FEATURES Location/Qualifiers
source 1..7685
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Hu/JP/1998/GI.PNAd-GI.6/No24-Saitama-98-26"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="Japan:Saitama"
/collection_date="1998"
/note="genotype: GI"
CDS 1..5358
/codon_start=1
/product="polyprotein"
/protein_id="BBB94172.1"
/translation="MMASKDVVAATAASASNASDNSTTIKDRLMAKLKNIGTNNKPIK
IENTHMALGLIRGSSPTPLKESPKQQRERAPRSVAETQQAMGWVEQPVDQNLPTWEEL
SESEKRDILAKNERWFDAGGLGPATLPDSYERTSQSDSHEHQVRWDANTGVDLGIRGL
TSVDGPAWNMCPMPPMDQRNSGPAKEPIIGDMLEFHEGHIYHYAIYIGQGKTIGVHSP
RAAFSIPRITIHPIAAWWRVCYTPSADQRLTYDQLRELENEPWPYAAVTNNCYDFCCH
VMGVQDTWLERRLITSGRFNHPTQDWSKETPDFQQDSKLEIVRDAVLAAINGLVSKPF
KNLLNKLKPLNVLNLLSNCDWTFMGVVETIILLMELFGVFWDPPDVSGFIASLLPDMH
LQGPEDLARDLIPLILGGIGLAIGFTKDKVTKVMKSAVEGLRAATQLGQYGLEIFAVI
KKYFFGGDQTEKTLKDIEAAVIDMEVISTTAITQLVRDKQSARTYMAILDAEEEKARR
LSVKHADPHVVSTTNALISRISLARSALAKAQAEMTNRVKPVVIMMCGPPGIGKTKAA
EYLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIAEDCNKLQAIA
DTAPLTLNCDRIEKKGLQFVSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCTAPE
VEQVRRTSPGDTGALKDCFKSDFSHLKMDLAPQGGFDNQGNTPFGKGTMRPTTLNRLL
IQAVALTMERQDEFQMQGPTYDFDADRVSAFTSLARANGLGLVGMAMLGKKLRNVDSV
HGLKNALAGYTITPCSIKWQARIYDIESDGTTVTIKENATAQTQRQHAIDTAVLALTR
LRAARAMAYASCLQSAVTTILQMAGSALVINRAVKRMFGTHTGTITLEGPAREHRCRA
HVAKANGGGPIGHDDVIDKYGLCETEEDDEGQDIKAVIPSAAPEGKNKGKTKKGRGRR
TNYNAFSRRGLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEEEMAEVQAGGDGGIG
ETEMEIRHRVFYKSKSKKNRQEERHQLGLVTGSDIRKRKPIDWTPPKNEWADDDREVD
YNEKISFEAPPTLWSRVVKFGSGWGFWVSPTVFITTTHVIPSNVREFFGEPIDTIAIH
RAGEFTQLRFSRKVRPDLTGMVLEEGCPEGVVCSILIKRDSGELLPLAVRMGAIASMK
IQGRLVHGQSGMLLTGANAKGMDLGTLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNT
VVCAVQAGEGETTLEGGDKGHYAGHEIVKHSNGPALSSKTKFWRSTTEPLPPGVYEPA
YLGGRDPRVKGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSMLEQTMDTPV
PWTYADACQSLDKTTSSGHPYHKRKNDDWNGTTFVGELGEQAAHANNMYEQGKSMKPL
YTAALKDELVKPEKVYQKIKKRLLWGADLSTVIRAARAFGPFCDAIKSHVIKLPIKVG
MNSIEDGPLIYAEHSRYKNHFDADYSAWDSTQNRQIMTESFSIMCRLTASPELASVVA
KDLLAPSEMDVGDYIIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQS
QSYFSFYGDDEIVSTDIDFDPARLTQVLKEYGLRPTRPDKSEGPIIMRRQIDGLVFLR
RTISKDAAGFQGRLDRASIERQLWWTRGPNHDDPSETLIPHPQRKVQLISLLGEASLH
GEKFYRKIASRVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDG
V"
gene 5342..6964
/gene="VP1"
CDS 5342..6964
/gene="VP1"
/codon_start=1
/product="viral protein 1"
/protein_id="BBB94173.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNVPLKDLSNSRVPVPIQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGSPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQGQDPSQSVTFATNDASFVPYLGSISPHNGGDFHSGDIIGSLGWISAPSDSS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQPGQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNGVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASVARRLGLRRI"
gene 6964..7593
/gene="VP2"
CDS 6964..7593
/gene="VP2"
/codon_start=1
/product="viral protein 2"
/protein_id="BBB94174.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDREMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSATTLRSGGFMAVPIPLSSKAKQPVMSGQDNPNYAASSISRTASWVQSQN
SIRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRK"
ORIGIN
1 atgatggcgt cgaaagacgt cgttgcagct actgctgcta gcgcttccaa cgctagtgac
61 aatagtacta caattaaaga tcgccttatg gcgaaactta agaatatagg cactaacaac
121 aagcctataa aaattgaaaa cacacacatg gcccttgggc tcatcagggg tagttcacca
181 acccccctga aagagtcccc caaacaacag agggagcggg ctccaaggag tgtggctgag
241 acccagcagg cgatgggctg ggtggagcag ccagtggatc aaaacttgcc aacgtgggag
301 gagttgagtg aatcagagaa gcgtgacatc ttggctaaga atgagagatg gtttgacgct
361 ggtggcctcg gccccgccac tctccctgac tcatacgaac gtacctcaca aagtgattca
421 catgaacatc aggtcagatg ggacgccaac acaggtgtgg accttggtat cagaggtttg
481 acatcggttg acggaccggc gtggaacatg tgcccgatgc cccctatgga ccagcgtaac
541 agcgggcctg ctaaggaacc aatcataggt gatatgttgg agttccatga gggacacatc
601 tatcactatg ccatttatat tggccaagga aagactattg gcgtgcactc accacgagcg
661 gctttctcaa ttccaagaat aaccatccat cctattgcag cttggtggag ggtgtgttac
721 actccaagcg cagaccaacg gctcacatac gatcagctaa gagaattgga aaatgagccg
781 tggccttatg ctgctgtgac taacaattgc tatgacttct gttgccatgt tatgggggtg
841 caggacacct ggctagaacg gcggcttatc acatctggcc gcttcaacca ccccacccaa
901 gattggtcta aggagactcc agacttccag caagatagca aactggagat agtcagggac
961 gccgttcttg ccgccattaa cgggcttgtc tcaaaaccat tcaagaatct cctcaacaag
1021 ctgaagcccc ttaacgtcct taacttgttg tcaaactgtg attggacctt catgggggtc
1081 gttgaaacca taatactcct gatggaacta tttggggtgt tttgggatcc ccctgatgta
1141 tcgggtttca tcgcttcact tttacctgat atgcacttgc agggtcctga agacctggct
1201 agggatctga taccattgat acttggggga attgggcttg caattgggtt caccaaagac
1261 aaagtcacca aggtcatgaa gagtgcagtg gagggcctcc gtgcagccac ccaacttggt
1321 cagtatggct tggagatctt tgcagtcatc aagaaatact tctttggtgg agaccaaaca
1381 gaaaagacac tcaaggatat agaggccgct gtcatagaca tggaggttat ctcgacgact
1441 gccataaccc aactggttag ggataagcag tctgcacgca catacatggc aatcctcgat
1501 gctgaggaag agaaagctag aaggttatca gtaaagcatg ctgaccccca cgttgtatca
1561 accacaaacg ccctcatctc acggatatca ttggctcggt ccgcgctagc taaggcgcag
1621 gcagaaatga ctaacagggt gaaacctgtc gtcataatga tgtgtggccc accaggaatt
1681 ggcaagacca aggcagcaga atatttggcc aagcggctag ctaatgaaat aagaccgggt
1741 ggcaaggtcg ggctggtccc acgtgaggct gtggaccact gggacggata ccatggcgag
1801 gaagtgatgc tgtgggatga ttatggtatg tcaaaaattg cggaggactg caacaaacta
1861 caggctattg cagacacagc ccccttgacc ctaaattgtg acagaattga aaagaaggga
1921 ctccagtttg tgtctgatgc cataatcata actacaaatg cccccggccc tgcgcctgtt
1981 gactttgtga accttggccc cgtttgtcgg cgtgtggatt tcctcgtcta ctgcacagct
2041 ccagaggtcg agcaggtccg gcgcaccagc cctggggata caggagctct taaggattgt
2101 tttaagagtg atttctccca tctaaaaatg gaccttgcgc cccaaggtgg atttgataac
2161 cagggtaata cgccttttgg caagggcacg atgcggccca ccacattaaa ccgactacta
2221 atacaggcag tggccctcac catggagcgg caagatgaat tccagatgca aggcccaact
2281 tatgactttg atgctgatag agtgtcagct ttcaccagtc tcgcccgtgc aaatggcttg
2341 ggccttgttg gcatggcaat gctggggaag aagctgagaa acgtggactc agtccatggc
2401 ctcaagaatg cactcgctgg gtacactata accccatgca gcataaaatg gcaggcaagg
2461 atctatgaca tcgagtctga tggcaccaca gtcactatca aggaaaatgc tactgctcaa
2521 acccagcgcc agcacgcaat tgacacagcc gtgttggccc tcacccgcct gagagctgct
2581 agggctatgg cgtatgcatc ctgtctgcaa agtgctgtta caactatatt gcaaatggcg
2641 ggttcagcac tagtcataaa tcgtgccgta aaacgcatgt ttggcacgca tactggtacc
2701 ataacactag aaggtcctgc ccgggaacac cgctgcaggg cccacgtagc caaggctaac
2761 ggaggtggcc caattggaca cgatgatgtc atagacaaat atggcctttg tgagacagag
2821 gaagacgacg aaggccaaga cataaaagct gtcattccct ctgctgcccc cgaaggtaag
2881 aataagggaa aaaccaagaa ggggaggggc agacgcacca actacaatgc attctcacga
2941 agggggctca gtgatgaaga gtatgaggag tataagaaaa taagagaaga aaagaatggc
3001 aactatagca tacaagagta tcttgaagac aggcaacgct atgaagaaga gatggctgaa
3061 gtccaggctg gtggtgacgg cggcattggc gaaactgaga tggaaatccg tcatagagtc
3121 ttctataaat ccaagagcaa aaagaaccgc caagaagaac gccaccaatt gggccttgta
3181 actggtagcg atatcaggaa gaggaagcca attgattgga ccccccctaa gaatgagtgg
3241 gctgatgatg atagggaagt ggattataat gaaaagatca gttttgaagc cccaccaacc
3301 ctctggagcc gtgtggtaaa atttggttct ggatggggct tttgggttag ccctacagtt
3361 ttcataacta ccacacatgt catcccttca aatgttaggg aattctttgg tgagccaatt
3421 gataccattg ccatccatcg cgcaggtgaa ttcacgcagc ttagattctc caggaaggta
3481 cgacctgact taaccgggat ggtcttagaa gagggttgcc ctgaaggagt tgtctgttcc
3541 atcttaataa aaagagactc cggtgagctc cttccccttg ctgttcgtat gggtgctata
3601 gcatcaatga agattcaagg gcgactggtt catggccaat cagggatgtt actaactgga
3661 gccaatgcca aagggatgga tctaggaacc ctgcccggag attgcggtgc cccatacgtc
3721 tacaaaagga acaatgactg ggttgtgtgt ggggtgcatg ctgcggcaac aaagtcaggg
3781 aacaccgtgg tgtgtgctgt ccaagcaggg gaaggagaga ctactctaga gggtggtgat
3841 aaagggcatt atgctggcca tgagatagtc aagcacagca acgggcctgc tctatccagc
3901 aagactaagt tttggagatc gacaactgaa ccactcccac ctggggtgta tgagccagca
3961 tatcttggag gtcgcgaccc tagggtaaag ggcggtcctt cactccaaca agtcctacgg
4021 gatcaactca aaccattcgc tgagccccgt ggacgcatgc ctgagcctgg tttgctggaa
4081 gcggccgttg agactgttac atcaatgtta gaacagacta tggacacgcc ggtcccatgg
4141 acatatgctg atgcttgcca gtcactagac aaaactacta gttcaggaca tccatatcac
4201 aagaggaaga atgatgattg gaatggcacc acctttgtag gggagctggg cgaacaggcc
4261 gcccacgcca acaacatgta tgagcagggg aagtccatga agccactcta cacggcagca
4321 ttgaaggatg agctagttaa gcctgagaag gtctatcaga agattaagaa gcgactccta
4381 tggggtgctg acttatccac agtgattagg gcggcgagag cttttggccc cttttgtgat
4441 gccataaaat cccatgtcat caagctccct attaaggttg gcatgaactc tattgaggat
4501 ggccccctga tttatgctga gcattcaaga tataaaaacc actttgatgc tgactattcg
4561 gcctgggatt ccactcaaaa tagacaaatc atgactgagt ccttctctat aatgtgccgg
4621 ctcaccgcat cacccgagtt ggcgtccgta gtggctaagg acctcctcgc tccttccgaa
4681 atggatgtgg gtgactacat aattagagtt aaagaagggc tcccctcagg attcccatgc
4741 acatcacaag ttaacagtat caaccattgg ctcattactc tctgtgcact ctcagaagta
4801 actggtcttt cccctgatgt aatccagtca caatcctatt tctcatttta tggggatgat
4861 gaaattgtat caactgatat agactttgat ccagcccgat taacccaggt gctcaaagag
4921 tatggacttc ggcccacgcg cccagacaag agcgagggtc ccataataat gaggagacag
4981 atagatggtc tggtattcct taggaggacg atttccaagg atgctgcagg gtttcagggg
5041 cgtctggata gagcctccat tgaaagacag ctctggtgga cacgtggccc gaatcatgat
5101 gaccctagtg agaccctaat accacaccca cagaggaaag tacaactcat ctcactcctt
5161 ggtgaagctt cactccatgg ggaaaagttc tatagaaaga tagccagcag agtcattcaa
5221 gaaattaaga cggggggctt ggaaatgtat gtgccaggtt ggcaggccat gttccgctgg
5281 atgcgtttcc atgaccttgg gctttggaca ggggatcgca atctgctgcc cgaattcgtg
5341 aatgatgatg gcgtctaagg acgccccaac atcccctgat ggcgctagtg gcgccggcca
5401 gctggtaccg gaggctaata cagctgagca aatttcaatg gaccctgttg cgggtgcttc
5461 aacagcagtc gcaacggctg gacaagttaa tatgattgac ccatggattt ttaataactt
5521 tgtccaggca ccccaaggag aattcactat ttcccctaat aatacccccg gtgatatctt
5581 gtttgatcta caattaggac cccaccttaa cccatttttg gctcatcttt cgcagatgta
5641 caatggatgg gttggcaata tgcgtgtacg catattgctg gcagggaatg cttttacagc
5701 tggaaagata attatctgct gtgttccccc tggttttgat gctagaatac tcacaattgc
5761 tcaggcaact cttttcccac acctgatcgc tgatgttagg actcttgagc ccgtggaact
5821 tcctctggag gacgtgcgca acgttctctt tcacaatagc agccagccgc aaccaacaat
5881 gcgattggtg gctatgttgt acaccccact ccgcacgggc ggtggctctg gaggcactga
5941 cgcctttgtg gtggcaggta gggtacttac gtgccctgcc cctgatttta gctttttgtt
6001 tcttgttccc ccttctgtcg agcaaaagac cagggtattc agtgttccta atgtacctct
6061 gaaagacctt tcaaattctc gtgtccctgt gcctatacag ggtatgttta tgtccccaga
6121 tgtcaaccag tcagtccagt ttcagaatgg gcgctgtcag attgatggcc agctccaggg
6181 caccacccct gtctcgctca gccagctttg caagatcagg ggtaagacct cgagcaatgc
6241 cagagtgctt aatctcagtg aggtagatgg ttcacctttc attcccctcg aatcgccagc
6301 accagttggc tttcccgatc tggggggctg cgactggcat gtgaatttta ctttccaggc
6361 tcagggccag gacccatctc aaagtgtgac ctttgcaacc aatgatgcta gctttgttcc
6421 atacctaggc agtatctctc cccataacgg gggagatttt cattcaggtg acatcatagg
6481 tagccttggc tggatttctg ccccgtccga cagttcccaa ctcaatgtct ggacaatacc
6541 gaagtacggt tccagcctcc cagatgtaac ccaccttgca cctgctgtgt ttcccccagg
6601 ttttggggag gttatcttgt acttctactc cacttttcca ggttctggcc aaccagggca
6661 actccaagtc ccatgtctat tacctcaaga gtttatcact cacttttgca atgaacaggc
6721 ccccattgct ggggaggctg ccctcctcca ttatgtggat cctgatacag ggcgaaactt
6781 gggggagttc aagctttacc ccgatggatt catgacttgt gtccctaatg gtgttagtag
6841 tggccctcaa accctcccca tcaatggagt ctttgtcttt gtttcatggg tgtctagatt
6901 ctatcaactt aagcctgtgg gaacggcctc agtggccaga aggcttggac tacggcgcat
6961 ataatggctc aagctgtcat cggagccatt gccgcctctg ccgccggcag catactcggg
7021 gcaggcatac aggctggcgc tgaggccggc ctccaggccc aacgatacca acaggaccta
7081 caattgcagc aaaattcttt taagcatgat agggaaatgc taggttacca ggtccaggct
7141 agtaatgctc ttctggctaa gaatcttaac actagatatg cccttctgca ggcagggggc
7201 ctgtctagtg ctgatgctgc tcgggcagta gctggtgctc ctgtcacccg tatagtggac
7261 tggaatggca cacggattgc agcgccaact tcaagtgcca caacattaag atctggtggt
7321 ttcatggccg tccctatacc attatcttca aaggctaagc aaccagtgat gtctgggcag
7381 gataatccaa attatgctgc ttcttctatc tctagaacag cctcatgggt gcaatctcag
7441 aattctataa gatctgtctc tcccttccac agtgatgctc taaggactgt gtgggtcaca
7501 ccaccaggtt catcttccac ttcatctgtg caatctagct tttatggtgt ttttaataca
7561 gataggttac ctctgttcgc aaacagaaag tgaggttttt gtaataagat gccagtgggc
7621 accatattca aatttaattt aattaggttg attaattaag atttggctta attggtgtta
7681 aaaaa
//