Typing tool
|
Complete norovirus genomes
LC342057 | GI.6 | ||
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GI.PNA4 |
ORF1: 1..5358 ORF2: 5342..6964 ORF3: 6964..7593LOCUS LC342057 7677 bp RNA linear VRL 02-APR-2019 DEFINITION Norovirus GI Hu/JP/1998/GI.PNAd-GI.6/No20-Saitama-98-17 genomic RNA, complete genome. ACCESSION LC342057 VERSION LC342057.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sano,D., Utagawa,E. and Katayama,K. TITLE Identification of novel norovirus polymerase genotypes from human fecal samples collected before year 2000 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7677) AUTHORS Utagawa,E., Katayama,K. and Doan,H.Y. TITLE Direct Submission JOURNAL Submitted (08-DEC-2017) Contact:Etsuko Utagawa Kitasato University, Kitasato Institute for Life Sciences, Laboratory of Viral Infection I; 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan FEATURES Location/Qualifiers source 1..7677 /organism="Norovirus GI" /mol_type="genomic RNA" /strain="Hu/JP/1998/GI.PNAd-GI.6/No20-Saitama-98-17" /host="Homo sapiens" /db_xref="taxon:122928" /country="Japan:Saitama" /collection_date="1998" /note="genotype: GI" CDS 1..5358 /codon_start=1 /product="polyprotein" /protein_id="BBB94169.1" /translation="MMASKDVVAATAASASNASDNSTTIKDRLMAKLKNIGTNNKPIK IENTHMALGLIRGSSPTPLKESPKQQRERAPRSVAETQQAMGWVEQPVDQNLPTWEEL SESEKRDILAKNERWFDAGGLGPATLPDSYERTSQSDSHEHQVRWDANTGVDLGIRGL TSVDGPAWNMCPMPPMDQRNSGPAKEPIIGDMLEFHEGHIYHYAIYIGQGKTIGVHSP RAAFSIPRITIHPIAAWWRVCYTPSADQRLTYDQLRELENEPWPYAAVTNNCYDFCCH VMGVQDTWLERRLITSGRFNHPTQDWSKETPDFQQDSKLEIVRDAVLAAINGLVSKPF KNLLNKLKPLNVLNLLSNCDWTFMGVVETIILLMELFGVFWDPPDVSGFIASLLPDMH LQGPEDLARDLIPLILGGIGLAIGFTKDKVTKVMKSAVEGLRAATQLGQYGLEIFAVI KKYFFGGDQTEKTLKDIEAAVIDMEVISTTAITQLVRDKQSARTYMAILDAEEEKARR LSVKHADPHVVSTTNALISRISLARSALAKAQAEMTNRVKPVVIMMCGPPGIGKTKAA EYLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIAEDCNKLQAIA DTAPLTLNCDRIEKKGLQFVSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVYCTAPE VEQVRRTSPGDTGALKDCFKSDFSHLKMDLAPQGGFDNQGNTPFGKGTMRPTTLNRLL IQAVALTMERQDEFQMQGPTYDFDADRVSAFTSLARANGLGLVGMAMLGKKLRNVDSV HGLKNALAGYTITPCSIKWQARIYDIESDGTTVTIKENATAQTQRQHAIDTAVLALTR LRAARAMAYASCLQSAVTTILQMAGSALVINRAVKRMFGTHTGTITLEGPAREHRCRA HVAKANGGGPIGHDDVIDKYGLCETEEDDEGQDIKAVIPSAAPEGKNKGKTKKGRGRR TNYNAFSRRGLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEEEMAEVQAGGDGGIG ETEMEIRHRVFYKSKSKKNRQEERHQLGLVTGSDIRKRKPIDWTPPKNEWADDDREVD YNEKISFEAPPTLWSRVVKFGSGWGFWVSPTVFITTTHVIPSNVREFFGEPIDTIAIH RAGEFTQLRFSRKVRPDLTGMVLEEGCPEGVVCSILIKRDSGELLPLAVRMGAIASMK IQGRLVHGQSGMLLTGANAKGMDLGTLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNT VVCAVQAGEGETTLEGGDKGHYAGHEIVKHSNGPALSSKTKFWRSTTEPLPPGVYEPA YLGGRDPRVKGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSMLEQTMDTPV PWTYADACQSLDKTTSSGHPYHKRKNDDWNGTTFVGELGEQAAHANNMYEQGKSMKPL YTAALKDELVKPEKVYQKIKKRLLWGADLSTVIRAARAFGPFCDAIKSHVIKLPIKVG MNSIEDGPLIYAEHSRYKNHFDADYSAWDSTQNRQIMTESFSIMCRLTASPELASVVA KDLLAPSEMDVGDYIIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQS QSYFSFYGDDEIVSTDIDFDPARLTQVLKEYGLRPTRPDKSEGPIIMRRQIDGLVFLR RTISKDAAGFQGRLDRASIERQLWWTRGPNHDDPSETLIPHPQRKVQLISLLGEASLH GEKFYRKIASRVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDG V" gene 5342..6964 /gene="VP1" CDS 5342..6964 /gene="VP1" /codon_start=1 /product="viral protein 1" /protein_id="BBB94170.1" /translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF LFLVPPSVEQKTRVFSVPNVPLKDLSNSRVPVPIQGMFMSPDVNQSVQFQNGRCQIDG QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGSPFIPLESPAPVGFPDLGGCDWHV NFTFQAQDQDPSQSVTFATNDASFVPYLGSISPHNGGDFHSGDIIGSLGWISAPSDSS QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQPGQLQVPCLLPQE FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN GVFVFVSWVSRFYQLKPVGTASVARRLGLRRI" gene 6964..7593 /gene="VP2" CDS 6964..7593 /gene="VP2" /codon_start=1 /product="viral protein 2" /protein_id="BBB94171.1" /translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN SFKHDREMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG TRIAAPTSSATTLRSGGFMAVPIPLSSKAKQPVMSGQDNPNYAASSISRTASWVQSQN SIRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR" ORIGIN 1 atgatggcgt cgaaagacgt cgttgcagct actgctgcta gcgcttccaa cgctagtgac 61 aatagtacta caattaaaga tcgccttatg gcgaaactta agaatatagg cactaacaac 121 aagcctataa aaattgaaaa cacacacatg gcccttgggc tcatcagggg tagttcacca 181 acccccctga aagagtcccc caaacaacag agggagcggg ctccaaggag tgtggctgag 241 acccagcagg cgatgggctg ggtggagcag ccagtggatc aaaacttgcc aacgtgggag 301 gagttgagtg aatcagagaa gcgtgacatc ttggctaaga atgagagatg gtttgacgct 361 ggtggcctcg gccccgccac tctccctgac tcatacgaac gtacctcaca aagtgattca 421 catgaacatc aggtcagatg ggacgccaac acaggtgtgg accttggtat cagaggtttg 481 acatcggttg acggaccggc gtggaacatg tgcccgatgc cccctatgga ccagcgtaac 541 agcgggcctg ctaaggaacc aatcataggt gatatgttgg agttccatga gggacacatc 601 tatcactatg ccatttatat tggccaagga aagactattg gcgtgcactc accacgagcg 661 gctttctcaa ttccaagaat aaccatccat cctattgcag cttggtggag ggtgtgttac 721 actccaagcg cagaccaacg gctcacatac gatcagctaa gagaattgga aaatgagccg 781 tggccttatg ctgctgtgac taacaattgc tatgacttct gttgccatgt tatgggggtg 841 caggacacct ggctagaacg gcggcttatc acatctggcc gcttcaacca ccccacccaa 901 gattggtcta aggagactcc agacttccag caagatagca aactggagat agtcagggac 961 gccgttcttg ccgccattaa cgggcttgtc tcaaaaccat tcaagaatct cctcaacaag 1021 ctgaagcccc ttaacgtcct taacttgttg tcaaactgtg attggacctt catgggggtc 1081 gttgaaacca taatactcct gatggaacta tttggggtgt tttgggatcc ccctgatgta 1141 tcgggtttca tcgcttcact tttacctgat atgcacttgc agggtcctga agacctggct 1201 agggatctga taccattgat acttggggga attgggcttg caattgggtt caccaaagac 1261 aaagtcacca aggtcatgaa gagtgcagtg gagggcctcc gtgcagccac ccaacttggt 1321 cagtatggct tggagatctt tgcagtcatc aagaaatact tctttggtgg agaccaaaca 1381 gaaaagacac tcaaggatat agaggccgct gtcatagaca tggaggttat ctcgacgact 1441 gccataaccc aactggttag ggataagcag tctgcacgca catacatggc aatcctcgat 1501 gctgaggaag agaaagctag aaggttatca gtaaagcatg ctgaccccca cgttgtatca 1561 accacaaacg ccctcatctc acggatatca ttggctcggt ccgcgctagc taaggcgcag 1621 gcagaaatga ctaacagggt gaaacctgtc gtcataatga tgtgtggccc accaggaatt 1681 ggcaagacca aggcagcaga atatttggcc aagcggctag ctaatgaaat aagaccgggt 1741 ggcaaggtcg ggctggtccc acgtgaggct gtggaccact gggacggata ccatggcgag 1801 gaagtgatgc tgtgggatga ttatggtatg tcaaaaattg cggaggactg caacaaacta 1861 caggctattg cagacacagc ccccttgacc ctaaattgtg acagaattga aaagaaggga 1921 ctccagtttg tgtctgatgc cataatcata actacaaatg cccccggccc tgcgcctgtt 1981 gactttgtga accttggccc cgtttgtcgg cgtgtggatt tcctcgtcta ctgcacagct 2041 ccagaggtcg agcaggtccg gcgcaccagc cctggggata caggagctct taaggattgt 2101 tttaagagtg atttctccca tctaaaaatg gaccttgcgc cccaaggtgg atttgataac 2161 cagggtaata cgccttttgg caagggcacg atgcggccca ccacattaaa ccgactacta 2221 atacaggcag tggccctcac catggagcgg caagatgaat tccagatgca aggcccaact 2281 tatgactttg atgctgatag agtgtcagct ttcaccagtc tcgcccgtgc aaacggcttg 2341 ggccttgttg gcatggcaat gctggggaag aagctgagaa acgtggactc agtccatggc 2401 ctcaagaatg cactcgctgg gtacactata accccatgca gcataaaatg gcaggcaagg 2461 atctatgaca tcgagtctga tggcaccaca gtcactatca aggaaaatgc tactgctcaa 2521 acccagcgcc agcacgcaat tgacacagcc gtgttggccc tcacccgcct gagagctgct 2581 agggctatgg cgtatgcatc ctgtctgcaa agtgctgtta caactatatt gcaaatggcg 2641 ggttcagcac tagtcataaa tcgtgccgta aaacgcatgt ttggcacgca tactggtacc 2701 ataacactag aaggtcctgc ccgggaacac cgctgcaggg cccacgtagc caaggctaac 2761 ggaggtggcc caattggaca cgatgatgtc atagacaaat atggcctttg tgagacagag 2821 gaagacgacg aaggccaaga cataaaagct gtcattccct ctgctgcccc cgaaggtaag 2881 aataagggaa aaaccaagaa ggggaggggc agacgcacca actacaatgc attctcacga 2941 agggggctca gtgatgaaga gtatgaggag tataagaaaa taagagaaga aaagaatggc 3001 aactatagca tacaagagta tcttgaagac aggcaacgct atgaagaaga gatggctgaa 3061 gtccaggctg gtggtgacgg cggcattggc gaaactgaga tggaaatccg tcatagagtc 3121 ttctataaat ccaagagcaa aaagaaccgc caagaagaac gccaccaatt gggccttgta 3181 actggtagcg atatcaggaa gaggaagcca attgattgga ccccccctaa gaatgagtgg 3241 gctgatgatg atagggaagt ggattataat gaaaagatca gttttgaagc cccaccaacc 3301 ctctggagcc gtgtggtaaa atttggttct ggatggggct tttgggttag ccctacagtt 3361 ttcataacta ccacacatgt catcccttca aatgttaggg aattctttgg tgagccaatt 3421 gataccattg ccatccaccg cgcaggtgaa ttcacgcagc ttagattctc caggaaagtg 3481 cgacctgact taaccgggat ggtcttagaa gagggttgcc ctgaaggagt tgtctgttcc 3541 atcttaataa aaagagactc cggtgagctc cttccccttg ctgttcgtat gggtgctata 3601 gcatcaatga agattcaagg gcgactggtt catggccaat cagggatgtt actaactgga 3661 gccaatgcca aagggatgga tctaggaacc ctgcccggag attgcggtgc cccatacgtc 3721 tacaaaagga acaatgactg ggttgtgtgt ggggtgcatg ctgcggcaac aaagtcaggg 3781 aacaccgtgg tgtgcgctgt ccaagcaggg gaaggagaga ctactctaga gggtggtgat 3841 aaagggcatt atgctggcca tgagatagtc aagcacagca acgggcctgc tctatccagc 3901 aagactaagt tttggagatc gacaactgaa ccactcccac ctggggtgta tgagccagca 3961 tatcttggag gtcgcgaccc tagggtaaag ggcggccctt cactccaaca agtcctacgg 4021 gatcaactca aaccattcgc tgagccccgt ggacgcatgc ctgagcctgg tttgctggaa 4081 gcggccgttg agactgttac atcaatgtta gaacagacta tggacacgcc ggtcccatgg 4141 acatatgctg atgcttgcca gtcactagac aaaactacta gttcaggaca tccatatcac 4201 aagaggaaga atgatgattg gaatggcacc acctttgtag gggagctggg cgaacaggcc 4261 gcccacgcca acaacatgta tgagcagggg aagtccatga agccactcta cacggcagca 4321 ttgaaggatg agctagttaa gcctgagaag gtctatcaga agattaagaa gcgactccta 4381 tggggtgctg acttatccac agtgattagg gcggcgagag cttttggccc cttttgtgat 4441 gccataaaat cccatgtcat caagctccct attaaggttg gcatgaactc tattgaggat 4501 ggccccctga tttatgctga gcattcaaga tataaaaacc actttgatgc tgactattcg 4561 gcctgggatt ccactcaaaa tagacaaatc atgactgagt ccttctctat aatgtgccgg 4621 ctcaccgcat cacccgagtt ggcgtccgta gtggctaagg acctcctcgc tccttccgaa 4681 atggatgtgg gtgactacat aattagagtt aaagaagggc tcccctcagg attcccatgc 4741 acatcacaag ttaacagtat caaccattgg ctcattactc tctgtgcact ctcagaagta 4801 actggtcttt cccctgatgt aatccagtca caatcctatt tctcatttta tggggatgat 4861 gaaattgtat caactgatat agactttgat ccagcccgat taacccaggt gctcaaagag 4921 tatggacttc ggcccacgcg cccagacaag agcgagggtc ccataataat gaggagacag 4981 atagatggtc tggtattcct taggaggacg atttccaagg atgctgcagg gtttcagggg 5041 cgtctggata gagcctccat tgaaagacag ctctggtgga cacgtggccc gaatcatgat 5101 gaccctagtg agaccctaat accacaccca cagaggaaag tacaactcat ctcactcctt 5161 ggtgaagctt cactccatgg ggaaaagttc tatagaaaga tagccagcag agtcattcaa 5221 gaaattaaga cggggggctt ggaaatgtat gtgccaggtt ggcaggccat gttccgctgg 5281 atgcgtttcc atgaccttgg gctttggaca ggggatcgca atctgctgcc cgaattcgtg 5341 aatgatgatg gcgtctaagg acgccccaac atcccctgat ggcgctagtg gcgccggcca 5401 gctggtaccg gaggctaata cagctgagca aatttcaatg gaccctgttg cgggtgcttc 5461 aacagcagtc gcaacggctg gacaagttaa tatgattgac ccatggattt ttaataactt 5521 tgtccaggca ccccaaggag aattcactat ttcccctaat aatacccccg gtgatatctt 5581 gtttgatcta caattaggac cccaccttaa cccatttttg gctcatcttt cgcagatgta 5641 caatggatgg gttggcaata tgcgtgtacg catattgctg gcagggaatg cttttacagc 5701 tggaaagata attatctgct gtgttccccc tggttttgat gctagaatac tcacaattgc 5761 tcaggcaact cttttcccac acctgatcgc tgatgttagg actcttgagc ccgtggaact 5821 tcctctggag gacgtgcgca acgttctctt tcacaatagc agccagccgc aaccaacaat 5881 gcgattggtg gctatgttgt acaccccact ccgcacgggc ggtggctctg gaggcactga 5941 cgcctttgtg gtggcaggta gggtacttac gtgccctgcc cctgatttta gctttttgtt 6001 tcttgttccc ccttctgtcg agcaaaagac cagggtattc agtgttccta atgtacctct 6061 gaaagacctt tcaaattctc gtgtccctgt gcctatacag ggtatgttta tgtccccaga 6121 tgtcaaccag tcagtccagt ttcagaatgg gcgctgtcag attgatggcc agctccaggg 6181 caccacccct gtctcgctca gccagctttg caagatcagg ggtaagacct cgagcaatgc 6241 cagagtgctt aatctcagtg aggtagatgg ttcacctttc attcccctcg aatcgccagc 6301 accagttggc tttcccgatc tggggggctg cgactggcat gtgaatttta ctttccaggc 6361 tcaggaccag gacccatctc aaagtgtgac ctttgcaacc aatgatgcta gctttgttcc 6421 atacctaggc agtatctctc cccataacgg gggagatttt cattcaggtg acatcatagg 6481 tagccttggc tggatttctg ccccgtccga cagttcccaa ctcaatgtct ggacaatacc 6541 gaagtacggt tccagcctcc cagatgtaac ccaccttgca cctgctgtgt ttcccccagg 6601 ttttggggag gttatcttgt acttctactc cacttttcca ggttctggcc aaccagggca 6661 actccaagtc ccatgtctat tacctcaaga gtttatcact cacttttgca atgaacaggc 6721 ccccattgct ggggaggctg ccctcctcca ttatgtggat cctgatacag ggcgaaactt 6781 gggggagttc aagctttacc ccgatggatt catgacttgt gtccctaata gtgttagtag 6841 tggccctcaa accctcccca tcaatggagt ctttgtcttt gtttcatggg tgtctagatt 6901 ctatcaactt aagcctgtgg gaacggcctc agtggccaga aggcttggac tacggcgcat 6961 ataatggctc aagctgtcat cggagccatt gccgcctctg ccgccggcag catactcggg 7021 gcaggcatac aggctggcgc tgaggccggc ctccaggccc aacgatacca acaggaccta 7081 cagttgcagc aaaattcttt taagcatgat agggaaatgc taggttacca ggtccaggct 7141 agtaatgctc ttctggctaa gaatcttaac actagatatg cccttctgca ggcagggggc 7201 ctgtctagtg ctgatgctgc tcgggcagta gctggtgctc ctgtcacccg tatagtggac 7261 tggaatggca cacggattgc agcgccaact tcaagtgcca caacattaag atctggtggt 7321 ttcatggccg tccctatacc attatcttca aaggctaagc aaccagtgat gtccggacag 7381 gataatccaa attatgctgc ttcttctatc tctagaacag cctcatgggt gcaatctcag 7441 aattctataa gatctgtctc tcccttccac agtgatgctc taaggactgt gtgggtcaca 7501 ccaccaggtt catcttccac ttcatctgtg caatctagct tttatggtgt ttttaataca 7561 gataggttac ctctgttcgc aaacagaagg tgaggttttt gtaataagat gccagtgggc 7621 accatattca aatttaattt aattaggttg attaattaag atttggctta attggtg //