Typing tool
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Typing tool
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Complete norovirus genomes
| LC318754 | GII.17 | |
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| GII.P17 |
ORF1: 1..1731
ORF2: 1712..3334
ORF3: 3334..3473
LOCUS LC318754 3473 bp RNA linear VRL 11-MAY-2018
DEFINITION Norovirus GII genes for nonstructural polyprotein, VP1, VP2,
partial and complete cds, strain:
Hu/GII/JP/2017/GII.P17_GII.17/OsakaFB434.
ACCESSION LC318754
VERSION LC318754.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Sakon,N., Sadamasu,K., Shinkai,T., Hamajima,Y., Yoshitomi,H.,
Matsushima,Y., Takada,R., Terasoma,F., Nakamura,A., Komano,J.,
Nagasawa,K., Shimizu,H., Katayama,K. and Kimura,H.
TITLE Foodborne Outbreaks Caused by Human Norovirus
GII.P17-GII.17-Contaminated Nori, Japan, 2017
JOURNAL Emerging Infect. Dis. 24 (5), 920-923 (2018)
PUBMED 29664371
REMARK DOI:10.3201/eid2405.171733
REFERENCE 2 (bases 1 to 3473)
AUTHORS Sakon,N., Takada,R., Tarasoma,F. and Hamajima,Y.
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2017) Contact:Naomi Sakon Osaka Institute of
Public Health, Microbiology; 1-3-69, Nakamichi, Higashinari-ku,
Osaka, Osaka 537-0025, Japan
FEATURES Location/Qualifiers
source 1..3473
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2017/GII.P17_GII.17/OsakaFB434"
/isolation_source="stool from gastroenteritis patient"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan:Osaka"
/collection_date="2017-02"
/note="genotype: GII.P17_GII.17"
gene <1..1731
/gene="POL"
CDS <1..1731
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BBC83340.1"
/translation="GQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDLVVIGVHTA
AARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSNAPL
PPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKTIINVL
EQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKANLMYE
EGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDEFKANC
ITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVRFSAE
PQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTG
LGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISED
LNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMA
LLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLA
PSFVNEDGVE"
CDS 1712..3334
/codon_start=1
/product="VP1"
/protein_id="BBC83341.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 3334..>3473
/codon_start=1
/product="VP2"
/protein_id="BBC83342.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SF"
ORIGIN
1 ggtcagatgg gtatgcttct cactggctca aatgctaaaa gcatggatct aggcacaacg
61 ccaggtgact gcggatgtcc atacatatac aaaaggggca atgaccttgt ggtcattggg
121 gtgcacactg cagcagctcg tggaggcaac acggtcatat gtgccacaca gggaagtgaa
181 ggtgaagcca ctcttgaagg aggtgacaac aagggtacct attgtggagc ccccattttg
241 ggacctggca atgcgccaaa attgagcaca aagacaaaat tctggagatc ctctaacgca
301 ccgcttcccc caggtactta tgaaccagca taccttggtg ggagagaccc gcgcgtgaag
361 ggaggcccat ctctgcaaca agttatgaga gaccaactta aacctttcac agagcccaga
421 gggaagccac caaacccaaa tgtcttagag tcagcaaaga agactatcat caatgttctg
481 gaacaaacca ttgacccccc tcaaaagtgg tcatatgccc aagcttgtgc atccctcgac
541 aagacaacct ccagtggata cccgcaccac gtccggaaga atgactattg gagtggtgaa
601 tccttcacag gaaaacttgc agatcaggct tcaaaagcaa atctcatgta tgaggaaggc
661 aagcacatgc aaccagttta caccgcagca ctcaaagacg agctcgtgaa aactgacaaa
721 atttatggca aaatcaagaa aagactcctg tggggttctg acctctccac aatgattcga
781 tgcgccagag catttggtgg tctcatggat gaattcaaag caaattgtat tacactccct
841 atcagagttg gtatgaatat gaatgaagat ggtcccataa tatttgagaa acactccagg
901 tacaggtacc actatgatgc tgattactcc cgctgggact ccacacaaca gcgggcagtg
961 ctggaagcgg cacttgaaat catggtgaga ttttctgctg agccacagct ggcacaaata
1021 gtggcagagg acctgctgtc accaagtgtg gttgatgtgg gcgatttcaa aatcgctatc
1081 aatgaaggcc taccatctgg cgtgccttgc acctcacaat ggaattctat tgcccactgg
1141 ttacttacct tgtgtgccct ttctgaagtg acaggattag gtcctgacat catacaagct
1201 aactccatgt actctttcta tggtgatgat gagattgtga gcacagacat aaaattggac
1261 ccagagaaat tgaccgcaaa gctcaaagaa tatggcctta aacccactcg gcccgacaaa
1321 actgaggggc cgttggtgat tagtgaggac ctgaatgggt tgactttcct ccgccgaaca
1381 gtcacccgtg atccagcagg ttggtttgga aagttggacc aaaactccat cctcaggcag
1441 ttgtactgga caagaggacc caaccatgaa gaccccagtg agaccatgat accacacgca
1501 caaagacctg tgcagctcat ggcactacta ggagaatcct ccctacatgg accctcattt
1561 tacagcaagg ttagcaaatt agtcatatct gaacttaaag agggaggaat ggatttttat
1621 gtgcctagac aagagtcaat gttcagatgg atgaggttct cagatctaag cacatgggag
1681 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgccgctcc
1741 atctaatgat ggtgctgctg gtctcgtacc agagggcaac aacgagaccc ttcccctaga
1801 accagttgcg ggcgcagcta tagccgcacc cgtcactggc caaaataata taattgaccc
1861 ctggattaga acaaattttg tgcaagcacc aaatggagag ttcacagtgt cacccagaaa
1921 ctctcctgga gaaattttat taaatttaga gttgggccct gatttgaacc cttatttggc
1981 tcatttgtca aggatgtaca atgggtatgc tggtggagtg gaagttcagg ttctcctggc
2041 agggaacgcg ttcactgccg gaaagatcct cttcgccgcc gtcccgccaa atttcccagt
2101 ggaattctta agcccagccc agatcacaat gctcccacat ttaatagtag atgttaggac
2161 tcttgaacca attatgatcc cactccctga tgttaggaat acattcttcc attatagtaa
2221 ccagcctaac agccgcatga gattagtggc tatgctctat accccactca gatctaatgg
2281 ctcaggtgat gatgtcttta ctgtctcttg cagggttttg actaggccta ctcctgattt
2341 tgagttcact tatttagtgc caccttctgt tgaatctaaa actaagcctt tttccttacc
2401 tattttaacc ctttctgagc tcacaaattc gaggtttcca gtccccatcg attcgctttt
2461 caccgcccag aataatgtgt tgcaggtgca gtgtcaaaat ggcaggtgta cacttgatgg
2521 tgagttacaa ggcacaaccc agttgctccc aactggcatc tgtgcattca gaggacgggt
2581 gacagcacaa attaaccaac gtgacaggtg gcacatgcaa ctgcaaaacc tcaatggtac
2641 aacatatgac ccaactgatg atgtgccagc cccgctgggt acacctgact tcaagggcgt
2701 cgtgtttggg atggtaagcc aaagaaatgt gggtaatgat gcgcctggct caaccagagc
2761 ccaacaggcg tgggtttcaa cctatagccc ccaatttgtc cccaaattag gttctgtcaa
2821 tcttagaatt agtgataatg atgatttcca attccagccg acaaaattca caccagtggg
2881 cgtcaatgat gacgatgatg gccacccgtt cagacaatgg gaactaccaa actattcagg
2941 ggagcttacc ttgaatatga atcttgcccc cccagttgct ccaaattttc ctggtgaaca
3001 attgttattc ttcagatctt tcgtgccatg ctcaggaggt tacaaccaag gtattataga
3061 ttgtcttatt ccccaagaat ggatccaaca cttctatcag gaatcagcac cctcccagtc
3121 agacgtggcc ctaatcaggt atgtcaaccc cgatacggga cgtacactgt ttgaagcaaa
3181 attgcacaga tctggttaca tcactgtggc tcactctgga gactatcctc ttgttgttcc
3241 ggctaatgga cactttagat ttgattcttg ggtaaatcag ttttactcac tcgccccaat
3301 gggaactggg aatgggcgaa ggagggctca gtaatggctg gggctttcat tgcaggattg
3361 gcaggcgaca tgctcacgtc atctgtgggc tcccttgtga acgcaggggc aaacgccatc
3421 aaccaaaaga tagactttga aaacaacaaa caactccagt ctgcttcctt tca
//