Typing tool
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Complete norovirus genomes
LC318754 | GII.17 | ||
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GII.P17 |
ORF1: 1..1731 ORF2: 1712..3334 ORF3: 3334..3473LOCUS LC318754 3473 bp RNA linear VRL 11-MAY-2018 DEFINITION Norovirus GII genes for nonstructural polyprotein, VP1, VP2, partial and complete cds, strain: Hu/GII/JP/2017/GII.P17_GII.17/OsakaFB434. ACCESSION LC318754 VERSION LC318754.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sakon,N., Sadamasu,K., Shinkai,T., Hamajima,Y., Yoshitomi,H., Matsushima,Y., Takada,R., Terasoma,F., Nakamura,A., Komano,J., Nagasawa,K., Shimizu,H., Katayama,K. and Kimura,H. TITLE Foodborne Outbreaks Caused by Human Norovirus GII.P17-GII.17-Contaminated Nori, Japan, 2017 JOURNAL Emerging Infect. Dis. 24 (5), 920-923 (2018) PUBMED 29664371 REMARK DOI:10.3201/eid2405.171733 REFERENCE 2 (bases 1 to 3473) AUTHORS Sakon,N., Takada,R., Tarasoma,F. and Hamajima,Y. TITLE Direct Submission JOURNAL Submitted (04-SEP-2017) Contact:Naomi Sakon Osaka Institute of Public Health, Microbiology; 1-3-69, Nakamichi, Higashinari-ku, Osaka, Osaka 537-0025, Japan FEATURES Location/Qualifiers source 1..3473 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/GII/JP/2017/GII.P17_GII.17/OsakaFB434" /isolation_source="stool from gastroenteritis patient" /host="Homo sapiens" /db_xref="taxon:122929" /country="Japan:Osaka" /collection_date="2017-02" /note="genotype: GII.P17_GII.17" gene <1..1731 /gene="POL" CDS <1..1731 /gene="POL" /codon_start=1 /product="nonstructural polyprotein" /protein_id="BBC83340.1" /translation="GQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDLVVIGVHTA AARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSNAPL PPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKTIINVL EQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKANLMYE EGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDEFKANC ITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVRFSAE PQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTG LGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISED LNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMA LLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLA PSFVNEDGVE" CDS 1712..3334 /codon_start=1 /product="VP1" /protein_id="BBC83341.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" CDS 3334..>3473 /codon_start=1 /product="VP2" /protein_id="BBC83342.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SF" ORIGIN 1 ggtcagatgg gtatgcttct cactggctca aatgctaaaa gcatggatct aggcacaacg 61 ccaggtgact gcggatgtcc atacatatac aaaaggggca atgaccttgt ggtcattggg 121 gtgcacactg cagcagctcg tggaggcaac acggtcatat gtgccacaca gggaagtgaa 181 ggtgaagcca ctcttgaagg aggtgacaac aagggtacct attgtggagc ccccattttg 241 ggacctggca atgcgccaaa attgagcaca aagacaaaat tctggagatc ctctaacgca 301 ccgcttcccc caggtactta tgaaccagca taccttggtg ggagagaccc gcgcgtgaag 361 ggaggcccat ctctgcaaca agttatgaga gaccaactta aacctttcac agagcccaga 421 gggaagccac caaacccaaa tgtcttagag tcagcaaaga agactatcat caatgttctg 481 gaacaaacca ttgacccccc tcaaaagtgg tcatatgccc aagcttgtgc atccctcgac 541 aagacaacct ccagtggata cccgcaccac gtccggaaga atgactattg gagtggtgaa 601 tccttcacag gaaaacttgc agatcaggct tcaaaagcaa atctcatgta tgaggaaggc 661 aagcacatgc aaccagttta caccgcagca ctcaaagacg agctcgtgaa aactgacaaa 721 atttatggca aaatcaagaa aagactcctg tggggttctg acctctccac aatgattcga 781 tgcgccagag catttggtgg tctcatggat gaattcaaag caaattgtat tacactccct 841 atcagagttg gtatgaatat gaatgaagat ggtcccataa tatttgagaa acactccagg 901 tacaggtacc actatgatgc tgattactcc cgctgggact ccacacaaca gcgggcagtg 961 ctggaagcgg cacttgaaat catggtgaga ttttctgctg agccacagct ggcacaaata 1021 gtggcagagg acctgctgtc accaagtgtg gttgatgtgg gcgatttcaa aatcgctatc 1081 aatgaaggcc taccatctgg cgtgccttgc acctcacaat ggaattctat tgcccactgg 1141 ttacttacct tgtgtgccct ttctgaagtg acaggattag gtcctgacat catacaagct 1201 aactccatgt actctttcta tggtgatgat gagattgtga gcacagacat aaaattggac 1261 ccagagaaat tgaccgcaaa gctcaaagaa tatggcctta aacccactcg gcccgacaaa 1321 actgaggggc cgttggtgat tagtgaggac ctgaatgggt tgactttcct ccgccgaaca 1381 gtcacccgtg atccagcagg ttggtttgga aagttggacc aaaactccat cctcaggcag 1441 ttgtactgga caagaggacc caaccatgaa gaccccagtg agaccatgat accacacgca 1501 caaagacctg tgcagctcat ggcactacta ggagaatcct ccctacatgg accctcattt 1561 tacagcaagg ttagcaaatt agtcatatct gaacttaaag agggaggaat ggatttttat 1621 gtgcctagac aagagtcaat gttcagatgg atgaggttct cagatctaag cacatgggag 1681 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgccgctcc 1741 atctaatgat ggtgctgctg gtctcgtacc agagggcaac aacgagaccc ttcccctaga 1801 accagttgcg ggcgcagcta tagccgcacc cgtcactggc caaaataata taattgaccc 1861 ctggattaga acaaattttg tgcaagcacc aaatggagag ttcacagtgt cacccagaaa 1921 ctctcctgga gaaattttat taaatttaga gttgggccct gatttgaacc cttatttggc 1981 tcatttgtca aggatgtaca atgggtatgc tggtggagtg gaagttcagg ttctcctggc 2041 agggaacgcg ttcactgccg gaaagatcct cttcgccgcc gtcccgccaa atttcccagt 2101 ggaattctta agcccagccc agatcacaat gctcccacat ttaatagtag atgttaggac 2161 tcttgaacca attatgatcc cactccctga tgttaggaat acattcttcc attatagtaa 2221 ccagcctaac agccgcatga gattagtggc tatgctctat accccactca gatctaatgg 2281 ctcaggtgat gatgtcttta ctgtctcttg cagggttttg actaggccta ctcctgattt 2341 tgagttcact tatttagtgc caccttctgt tgaatctaaa actaagcctt tttccttacc 2401 tattttaacc ctttctgagc tcacaaattc gaggtttcca gtccccatcg attcgctttt 2461 caccgcccag aataatgtgt tgcaggtgca gtgtcaaaat ggcaggtgta cacttgatgg 2521 tgagttacaa ggcacaaccc agttgctccc aactggcatc tgtgcattca gaggacgggt 2581 gacagcacaa attaaccaac gtgacaggtg gcacatgcaa ctgcaaaacc tcaatggtac 2641 aacatatgac ccaactgatg atgtgccagc cccgctgggt acacctgact tcaagggcgt 2701 cgtgtttggg atggtaagcc aaagaaatgt gggtaatgat gcgcctggct caaccagagc 2761 ccaacaggcg tgggtttcaa cctatagccc ccaatttgtc cccaaattag gttctgtcaa 2821 tcttagaatt agtgataatg atgatttcca attccagccg acaaaattca caccagtggg 2881 cgtcaatgat gacgatgatg gccacccgtt cagacaatgg gaactaccaa actattcagg 2941 ggagcttacc ttgaatatga atcttgcccc cccagttgct ccaaattttc ctggtgaaca 3001 attgttattc ttcagatctt tcgtgccatg ctcaggaggt tacaaccaag gtattataga 3061 ttgtcttatt ccccaagaat ggatccaaca cttctatcag gaatcagcac cctcccagtc 3121 agacgtggcc ctaatcaggt atgtcaaccc cgatacggga cgtacactgt ttgaagcaaa 3181 attgcacaga tctggttaca tcactgtggc tcactctgga gactatcctc ttgttgttcc 3241 ggctaatgga cactttagat ttgattcttg ggtaaatcag ttttactcac tcgccccaat 3301 gggaactggg aatgggcgaa ggagggctca gtaatggctg gggctttcat tgcaggattg 3361 gcaggcgaca tgctcacgtc atctgtgggc tcccttgtga acgcaggggc aaacgccatc 3421 aaccaaaaga tagactttga aaacaacaaa caactccagt ctgcttcctt tca //