Typing tool
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Typing tool
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Complete norovirus genomes
| LC318753 | GII.17 | |
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| GII.P17 |
ORF1: 1..1743
ORF2: 1724..3346
ORF3: 3346..3478
LOCUS LC318753 3478 bp RNA linear VRL 11-MAY-2018
DEFINITION Norovirus GII genes for nonstructural polyprotein, VP1, VP2,
partial and complete cds, strain:
Hu/GII/JP/2017/GII.P17_GII.17/OsakaFB433.
ACCESSION LC318753
VERSION LC318753.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Sakon,N., Sadamasu,K., Shinkai,T., Hamajima,Y., Yoshitomi,H.,
Matsushima,Y., Takada,R., Terasoma,F., Nakamura,A., Komano,J.,
Nagasawa,K., Shimizu,H., Katayama,K. and Kimura,H.
TITLE Foodborne Outbreaks Caused by Human Norovirus
GII.P17-GII.17-Contaminated Nori, Japan, 2017
JOURNAL Emerging Infect. Dis. 24 (5), 920-923 (2018)
PUBMED 29664371
REMARK DOI:10.3201/eid2405.171733
REFERENCE 2 (bases 1 to 3478)
AUTHORS Sakon,N., Takada,R., Tarasoma,F. and Hamajima,Y.
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2017) Contact:Naomi Sakon Osaka Institute of
Public Health, Microbiology; 1-3-69, Nakamichi, Higashinari-ku,
Osaka, Osaka 537-0025, Japan
FEATURES Location/Qualifiers
source 1..3478
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2017/GII.P17_GII.17/OsakaFB433"
/isolation_source="stool from gastroenteritis patient"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Japan:Osaka"
/collection_date="2017-02"
/note="genotype: GII.P17_GII.17"
gene <1..1743
/gene="POL"
CDS <1..1743
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BBC83337.1"
/translation="RTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDLVVIG
VHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSS
NAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKTI
INVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKAN
LMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDEF
KANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVR
FSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALS
EVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLV
ISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPV
QLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGD
RNLAPSFVNEDGVE"
CDS 1724..3346
/codon_start=1
/product="VP1"
/protein_id="BBC83338.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 3346..>3478
/codon_start=1
/product="VP2"
/protein_id="BBC83339.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
"
ORIGIN
1 agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa aagcatggat
61 ctaggcacaa cgccaggtga ctgcggatgt ccatacatat acaaaagggg caatgacctt
121 gtggtcattg gggtgcacac tgcagcagct cgtggaggca acacggtcat atgtgccaca
181 cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaagggtac ctattgtgga
241 gcccccattt tgggacctgg caatgcgcca aaattgagca caaagacaaa attctggaga
301 tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg tgggagagac
361 ccgcgcgtga agggaggccc atctctgcaa caagttatga gagaccaact taaacctttc
421 acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa gaagactatc
481 atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc ccaagcttgt
541 gcatccctcg acaagacaac ctccagtgga tacccgcacc acgtccggaa gaatgactat
601 tggagtggtg aatccttcac aggaaaactt gcagatcagg cttcaaaagc aaatctcatg
661 tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga cgagctcgtg
721 aaaactgaca aaatttatgg caaaatcaag aaaagactcc tgtggggttc tgacctctcc
781 acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa agcaaattgt
841 attacactcc ctatcagagt tggtatgaat atgaatgaag atggtcccat aatatttgag
901 aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga ctccacacaa
961 cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc tgagccacag
1021 ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt gggcgatttc
1081 aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca atggaattct
1141 attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacaggatt aggtcctgac
1201 atcatacaag ctaactccat gtactctttc tatggtgatg atgagattgt gagcacagac
1261 ataaaattgg acccagagaa attgaccgca aagctcaaag aatatggcct taaacccact
1321 cggcccgaca aaactgaggg gccgttggtg attagtgagg acctgaatgg gttgactttc
1381 ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga ccaaaactcc
1441 atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag tgagaccatg
1501 ataccacacg cacaaagacc tgtgcagctc atggcactac taggagaatc ctccctacat
1561 ggaccctcat tttacagcaa ggttagcaaa ttagtcatat ctgaacttaa agagggagga
1621 atggattttt atgtgcctag acaagagtca atgttcagat ggatgaggtt ctcagatcta
1681 agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgaa
1741 tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca acaacgagac
1801 ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg gccaaaataa
1861 tataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag agttcacagt
1921 gtcacccaga aactctcctg gagaaatttt attaaattta gagttgggcc ctgatttgaa
1981 cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag tggaagttca
2041 ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg ccgtcccgcc
2101 aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac atttaatagt
2161 agatgttagg actcttgaac caattatgat cccactccct gatgttagga atacattctt
2221 ccattatagt aaccagccta acagccgcat gagattagtg gctatgctct ataccccact
2281 cagatctaat ggctcaggtg atgatgtctt tactgtctct tgcagggttt tgactaggcc
2341 tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta aaactaagcc
2401 tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggtttc cagtccccat
2461 cgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa atggcaggtg
2521 tacacttgat ggtgagttac aaggcacaac ccagttgctc ccaactggca tctgtgcatt
2581 cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc aactgcaaaa
2641 cctcaatggt acaacatatg acccaactga tgatgtgcca gccccgctgg gtacacctga
2701 cttcaagggc gtcgtgtttg ggatggtaag ccaaagaaat gtgggtaatg atgcgcctgg
2761 ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg tccccaaatt
2821 aggttctgtc aatcttagaa ttagtgataa tgatgatttc caattccagc cgacaaaatt
2881 cacaccagtg ggcgtcaatg atgacgatga tggccacccg ttcagacaat gggaactacc
2941 aaactattca ggggagctta ccttgaatat gaatcttgcc cccccagttg ctccaaattt
3001 tcctggtgaa caattgttat tcttcagatc tttcgtgcca tgctcaggag gttacaacca
3061 aggtattata gattgtctta ttccccaaga atggatccaa cacttctatc aggaatcagc
3121 accctcccag tcagacgtgg ccctaatcag gtatgtcaac cccgatacgg gacgtacact
3181 gtttgaagca aaattgcaca gatctggtta catcactgtg gctcactctg gagactatcc
3241 tcttgttgtt ccggctaatg gacactttag atttgattct tgggtaaatc agttttactc
3301 actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc tggggctttc
3361 attgcaggat tggcaggcga catgctcacg tcatctgtgg gctcccttgt gaacgcaggg
3421 gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca gtctgctt
//