Typing tool
|
Complete norovirus genomes
LC209481 | GII.2 | ||
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GII.P16 |
ORF1: 5..5101 ORF2: 5082..6710 ORF3: 6710..7489LOCUS LC209481 7533 bp RNA linear VRL 14-DEC-2017 DEFINITION Norovirus Hu/GII/JP/2010/GII.P16_GII.2/Ehime-43 RNA, complete genome. ACCESSION LC209481 VERSION LC209481.1 KEYWORDS . SOURCE Norovirus Hu/GII/JP/2010/GII.P16_GII.2/Ehime-43 ORGANISM Norovirus Hu/GII/JP/2010/GII.P16_GII.2/Ehime-43 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S., Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N., Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y., Katayama,K. and Kimura,H. TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015 JOURNAL Front Microbiol 8, 705 (2017) PUBMED 28487679 REMARK DOI:10.3389/fmicb.2017.00705 Publication Status: Online-Only REFERENCE 2 (bases 1 to 7533) AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H. TITLE Direct Submission JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City Institute for Public Health, Division of Virology; Tonomachi 3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan FEATURES Location/Qualifiers source 1..7533 /organism="Norovirus Hu/GII/JP/2010/GII.P16_GII.2/Ehime-43" /mol_type="genomic RNA" /strain="Hu/GII/JP/2010/GII.P16_GII.2/Ehime-43" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:1934307" /country="Japan: Ehime" /collection_date="2010" /note="genotype: GII.P16_GII.2" gene 5..5101 /gene="POL" CDS 5..5101 /gene="POL" /codon_start=1 /product="nonstructural polyprotein" /protein_id="BBB87061.1" /translation="MKMASNDANVAVACNNNNDKEKSSGEGLFTNVSSTLKKALGARP KQSVPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKGGISGLPELTTVPQP DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI SMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND SWLNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLEDYELQGPE DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPDVE KAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR ASGLLHERMDEFELQGPTVITFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKT MEELKQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEV PKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERTTLGLVT GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVNFGSGWGFWVSPS LFITSTHVIPAGITEAFGVSIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLS TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDS TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTS QWNSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKE YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE" gene 5082..6710 /gene="VP1" CDS 5082..6710 /gene="VP1" /codon_start=1 /product="capsid protein VP1" /protein_id="BBB87062.1" /translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDVPAPLGVPDFQGRVFG IISQRDKHNGPGQNEPANRGHDAVVPTYTAQYTPKLGQVQIGTWQTDDLTVNQPVKFT PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYVPLKGGYGNPA IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6710..7489 /gene="VP2" CDS 6710..7489 /gene="VP2" /codon_start=1 /product="capsid protein VP2" /protein_id="BBB87063.1" /translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN SFNHDKEMLQAQIQATKQLQADMMAIKQGVLIAGGFSPADAARGAVNAPMTQALDWNG TRYWAPGSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT GSSHGTASSDSTRNTSLSQSTISRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESHA" ORIGIN 1 gtgaatgaag atggcgtcta acgacgctaa cgttgccgtt gcttgcaaca acaacaacga 61 caaggaaaaa tcttcaggtg aaggcttatt cacaaatgtg tcttccacct taaagaaagc 121 cctcggggcc cggcccaaac agtctgtccc gagggacaac tcacaaaagc ccccaagacc 181 accaactccc gagttggtta agaggatacc ccctccccca cctaatggtg aagaagaaga 241 accagtcatt aggtatgagg ttaagggtgg gatctctggc ctgcccgagc tcacaacagt 301 cccccaaccg gatgtggcca acacggcatt cagtgtccca ccgctgagct tgagagaaaa 361 cagggaggcc aaggagccgc tgacaggggc aatattagag atgtgggatg gagagatata 421 ccactatggc ctgtacgtgg agaaaggctt agtgttgggt gtgcacaaac cacctgcagc 481 tataagcatg gcaaaagtgg agctgacgcc gttgtcattg tactggcgtg tggtctacac 541 cccccaatac ctcatctccc ctgaaactct caggaggctc aacggagagg cattccctta 601 caccgccttt gacaacaact gctatgcctt ttgctgctgg gtgttagacc tcaatgactc 661 atggcttaac aggaggatgg tgcaaagaac aacaggcttc ttcagacctt accaagagtg 721 gaacagaaaa cccctgccta ctatggatga ctccaaaatc aagaaggtgg caaacatatt 781 cctgtgttca ttgtccacgt tgttcaccag acctataaaa gacctcatag gaaaaattaa 841 accattaaac atcttgaaca tcctggcaac gtgtgactgg acattcgccg gaatagtgga 901 gtctctgata ttacttgctg agctctttgg agttttctgg acacccccag atgtgtctgc 961 tatgatcgct cccttacttg aagactacga gttgcaaggg ccagaagacc tcgccgttga 1021 gctcgtacct gtggtaatgg gagggattgg tttggtgttg ggattcacca aagagaaaat 1081 tggcaaaatg ttgtcctcag cagcatcaac gctcagggct tgtaaagatc ttggtgccta 1141 tggcttagag atactcaaat tagtcatgaa gtggttcttc ccaaagaaag aagaggccaa 1201 tgagctagcc atggtgagag ctatagagga tgctgtactg gatcttgagg caatagaaaa 1261 taatcacatg acaactctgt tgaaagacaa agacagccta gcaacctaca tgaaaacact 1321 agacatggaa gaggagaaag ccagaagatt gtccacaaaa tctgcatccc ctgacatagt 1381 tgggacgatc aacgccctgc tggctcgaat agcagcggca aggtcactag tccacagggc 1441 caaggaggag ttatctagca ggataagacc agtagttgtt atgatatctg gcaaaccagg 1501 gataggaaaa actcatttgg ccagggaggt ggcaagaaag gtggcatcca ctctcacagg 1561 ggatcaaaga gtcggactca taccgagaaa cggcgtggac cattgggatg catacaaagg 1621 tgagagagtc gtgctgtggg acgactatgg catgagcaac cccattcatg atgctttgcg 1681 catacaagaa ttggctgata cgtgtcccct caccttaaat tgcgacagaa ttgaaaataa 1741 gggaaaagtt tttgacagtg aagtcataat aattacaaca aaccttgcca atccagctcc 1801 acttgattat gtcaactttg aggcctgttc caggagaatt gatttcctgg tgtacgccga 1861 ggcaccagac gtagaaaagg caaaacgaga ctttcctgga caaccagata tgtggaagga 1921 cgcattcaag tcggactttt cacatatcaa gttgcaactt gcacctcagg gcggctttga 1981 caagaatggc aacaccccac atgggaaagg agtgatgaag accctcacca ccggttccct 2041 gattgcccgt gcatcaggct tactgcatga gaggatggat gaatttgaac tccaaggccc 2101 cacagtcatc accttcaatt tcgaccggaa cagaatcacc gcattcagac aattggctgc 2161 agaaaacaag tatgggttgg tggacaccat gagagttggc aatcaattaa aaggggtgaa 2221 aaccatggaa gaactcaaac aagcaatcaa gaatgtgatc atcaagaggt gccggatcat 2281 ctacggtggc tccacgtatg acctcgaatc tgatggcaag ggcaaagttt tggtggaaaa 2341 ggtcaagaac acctctgtac agaccaacaa cgaattggcc ggagccctgc atcacctcaa 2401 acatgcccga atcaggtact atgtcaaatg tgtgcaagaa gcagtttact ctatcataca 2461 aattgccggc gctgcgtttg tcaccacacg cattgcacgc cgcatgaaca tacaagagct 2521 ttggtcgaag ccaccattag accaaaatga atcagaggct aaggaagagg tccccaagtc 2581 agaagatgac gagttcatca tatcttctaa ggacatcaag gaggaaggaa agaagggcaa 2641 aaacaaaact ggccgtggca agaaacacac tgcattctct agcaagggct tgagcgatga 2701 ggagtatgac gagtacaaga ggataagaga agagagaaat gggaagtact ctatagagga 2761 gtatcttcaa gacagagaca ggtactatga ggaactcgcc atcgccaagg ccacggaaga 2821 agacttctgt gaggaggagg aggtcaaaat ccgtcagagg atcttccgtc ccaccaggaa 2881 acaaaggaag gaagagagga ccacactagg actagtaact ggttcagaaa tcagaaaaag 2941 gaaccctgat gacttcaaac ctaaagggaa actgtgggcc gatgacaaca gaagtgttga 3001 ctacaatgag aaactggact ttgaggcccc cccaagtata tggtctagga ttgtgaattt 3061 tggttctggt tggggcttct gggtatcacc aagcctgttc ataacatcaa ctcatgtaat 3121 ccctgcaggc ataacagagg catttggagt ctccatcaaa caaatccagg tccacaaatc 3181 aggtgaattt tgccggttca gattcccaaa accaattaga ccagatgtga caggaatgat 3241 cttggaagaa ggtgcgcctg agggcaccgt ggcaaccgtg ctcatcaaac gccctaccgg 3301 agagctcatg ccccttgcag ccagaatggg gacacacgca accatgaaaa ttcaaggccg 3361 catggttggc ggacagatgg gtatgttgct cactggttca aatgctaaag gaatggattt 3421 gggaacaact cctggtgatt gtggctgtcc ctacatctac aaaaggggca atgactatat 3481 agtcattggt gtgcacacag cagcagcccg tggtggaaac accgtcatct gtgccacaca 3541 gggaagtgag ggtgaggcaa ctcttgaggg tggagatgac aaaggaacat attgtggggc 3601 acccattcta ggccccgggg gggcaccaaa attgagcacc aaaaccaaat tttggaggtc 3661 atcgaacacg cctcttccac cagggacata tgagcctgcc tacctcggtg gccgcgaccc 3721 gcgtgttaag ggtgggccct ccttgcagca ggtaatgaga gaccagttga aaccattcac 3781 tgaacccagg ggtaaacctc caagaccaag tgtgttggaa gcagccaaac aaaccatcat 3841 caatgtcctc gaacaaaccc tggaccctcc acaaaaatgg acgtacgcac aggcgtgtgc 3901 ttcacttgac aaaaccacct ccagcgggca tccccaccac gtccgaaaga atgaattctg 3961 gaatggtgag accttcactg gtaaattggc agaccaagca tcaaaagcaa acctgatgtt 4021 tgaggaaggt aaacacatga caccagtgta tacagcagcc cttaaggacg agctggtcaa 4081 gactgacaaa gtctatggaa agatcaagaa gagactgctc tggggctctg acttgtccac 4141 catgatccgg tgcgccaggt cctttggtgg gctcatggat gagatgaagg cacactgcat 4201 atcactccca gttcgagttg gcatgaacat gaatgaagat ggtccaataa tatttgagag 4261 gcactccaga tacaagtacc actatgatgc agactactcc cgctgggatt caacacaaca 4321 gagggcagta ctagcagcag ccttggaaat catggtcagg ttctctgcag agccacaatt 4381 ggcacagata gtcgctgagg atctgctggc ccccagtgtg gtagatgtag gagactttaa 4441 aatttcaata aatgaagggc tcccctctgg tgtaccatgc acttctcaat ggaattccat 4501 cgcacactgg ctgctaaccc tctgtgcctt gtctgaagtc accaaactgt cccctgacat 4561 tgtacaggca aattccatgt tctcatttta cggtgatgac gagattgtca gcaccgatat 4621 aaaattggac cctgaaaagt tgaccaccaa attgaaggag tacggcctga aaccaacccg 4681 cccagacaaa actgaggggc ccctgatcat cagtgaagat ttgaacggac tcacttttct 4741 ccggaggacg gtgactcgtg acccagctgg ctggtttgga aaattggacc aaagttcaat 4801 attgaggcag atgtactgga ctagaggacc aaatcatgaa gaccccaatg agacaatgat 4861 accccactct caaagaccca tacagctcat ggcactgctt ggtgaggctt cccttcacgg 4921 accctctttc tacagcaaaa tcagtaaatt ggtcataact gaactcaaag aaggtgggat 4981 ggacttttac gtgccaaggc aggaacccat gttcaggtgg atgaggtttt ctgacttgag 5041 cacgtgggag ggcgatcgca atctggctcc caattttgtg aatgaagatg gcgtcgaatg 5101 acgccgctcc atctactgat ggtgcagccg gcctcgtgcc agaaagtaac aatgaggtca 5161 tggctcttga acccgtggct ggtgccgcct tggcagcccc ggtcaccggt caaacaaata 5221 ttatagaccc ttggattaga gcaaattttg tccaggcccc caatggcgaa tttacagtct 5281 ctccccgtaa tgcccctggt gaagtgctat taaatctaga gttgggtcca gaattaaatc 5341 cttatctggc acatttagca agaatgtaca acgggtatgc cggtgggatg gaggtgcagg 5401 tcatgttggc tgggaacgcg ttcacagccg gcaagttggt cttcgccgcc gtgccacctc 5461 acttcccggt tgaaaacctt agcccacagc aaattaccat gttccctcat gtgattatag 5521 atgtaaggac cttggaacct gttttattac cactccctga tgttaggaat aatttctttc 5581 actataatca gaaagatgat cccaaaatga gaattgtggc tatgctttac acccccctta 5641 ggtctaatgg ttcaggtgat gatgtgttca cagtttcctg cagggtgttg actagaccct 5701 cccctgattt tgacttcaca tatctggtgc caccaacagt ggaatctaaa acaaaaccat 5761 tcaccctccc aatcctcaca cttggggaac tttccaactc taggttccca gtgtccatag 5821 accagatgta caccagccct aatgaagtta tatcagtgca gtgtcaaaat ggtaggtgca 5881 cattggacgg ggagcttcaa gggacaacac aactccaagt cagtggcatt tgtgctttca 5941 agggggaagt gaccgcccat ttgcacgaca atgatcacct atacaatgtc accatcacaa 6001 acttgaatgg gtcccctttt gacccctccg aggacgttcc tgcccctctg ggcgtgcctg 6061 atttccaggg aagggtcttt ggtatcatct cccaaagaga caaacacaat ggccctgggc 6121 aaaatgaacc agcaaacagg ggacacgacg ctgtggtccc tacttacaca gcacagtaca 6181 ctccaaaatt gggtcaggtt caaattggca catggcagac cgacgatctt acagtcaacc 6241 aaccagtcaa attcacccca gttggactca atgacactga acattttaat caatgggtgg 6301 tccccagata cgctggtgcc ctaaacctca atacaaacct tgccccttct gttgccccag 6361 tatttccagg ggagcgccta cttttcttca gatcatacgt tcccctcaag ggtggttatg 6421 gaaatccagc cattgattgc ctattaccac aagagtgggt gcaacacttc tatcaggagg 6481 ctgccccatc aatgagtgag gtggcccttg tcagatacat taacccggat actggtcggg 6541 cgctgtttga ggccaagctc cacagagctg gtttcatgac agtctcgagc aacaccagtg 6601 ccccggtggt tgtgcctgcc aatgggtact tcagatttga ctcttgggtt aatcaattct 6661 attctctcgc ccccatggga actggaaatg ggcgtagaag ggttcaataa tggctggagc 6721 ttttgtagct ggtcttgcag gggacgtgct cagcaatggg ctcagttcat taattaatgc 6781 aggtgctaat gcaataaatc agagggcaga atttgatttt aatcagaaat tacagcaaaa 6841 ttctttcaat catgataagg agatgttgca ggcccagatc caggcaacta agcagctgca 6901 ggcagacatg atggctataa aacagggggt cctgatcgct ggcggctttt cccctgctga 6961 tgcagccaga ggtgctgtga atgcgcccat gacacaggcg ctggattgga acggcacaag 7021 gtattgggca ccaggttcta tgaggaccac atcttattct ggaaaattta catcaaccgc 7081 cccagtgagg caggccgact tccagcacac ccaaagccgg ccttcgagtg gttcttctgt 7141 gtcctccttt gccactcagt cttcaaggcc aactctgacc acaaccactg ggtcctcaca 7201 tggcacagcc tcatcagatt caactcgcaa cacaagcctc tcccaatcaa cgatctctag 7261 agctacatct aggactagtg agtgggttag agaccaaaat agaaatttgg aaccctacat 7321 gcatggtgcc ttacagacgg cctttgtcac cccaccttcc agcagggcgt ctgacgggac 7381 agtctcaacc gtcccaaaag gtgttttgga ctcctggaca cctgcgttca acacccgcag 7441 gcagccgctc ttcgcacacc tccgtaagag gggggagtca catgcctagt gaaaaggtga 7501 aaatttgttt agaataaatt gattctacct ttt //