Typing tool
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Typing tool
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Complete norovirus genomes
| LC209480 | GII.2 | |
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| GII.P16 |
ORF1: 5..5101
ORF2: 5082..6710
ORF3: 6710..7489
LOCUS LC209480 7533 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2010/GII.P16_GII.2/Ehime-44 RNA, complete
genome.
ACCESSION LC209480
VERSION LC209480.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2010/GII.P16_GII.2/Ehime-44
ORGANISM Norovirus Hu/GII/JP/2010/GII.P16_GII.2/Ehime-44
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7533)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7533
/organism="Norovirus
Hu/GII/JP/2010/GII.P16_GII.2/Ehime-44"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2010/GII.P16_GII.2/Ehime-44"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934306"
/country="Japan: Ehime"
/collection_date="2010"
/note="genotype: GII.P16_GII.2"
gene 5..5101
/gene="POL"
CDS 5..5101
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BBB87058.1"
/translation="MKMASNDANVAVACNNNNDKEKSSGEGLFTNVSSTLKKALGARP
KQSVPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKGGISGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLEDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPDVE
KAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTVITFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKT
MEELKQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL
KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEV
PKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERTTLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVNFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVSIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN
HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5082..6710
/gene="VP1"
CDS 5082..6710
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB87059.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDVPAPLGVPDFQGRVFG
IISQRDKHNGPGQNEPANRGHDAVVPTYTAQYTPKLGQVQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYVPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6710..7489
/gene="VP2"
CDS 6710..7489
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB87060.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLIAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSDSTRNTSLSQSTISRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESHA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctaa cgttgccgtt gcttgcaaca acaacaacga
61 caaggaaaaa tcttcaggtg aaggcttatt cacaaatgtg tcttccacct taaagaaagc
121 cctcggggcc cggcccaaac agtctgtccc gagggacaac tcacaaaagc ccccaagacc
181 accaactccc gagttggtta agaggatacc ccctccccca cctaatggtg aagaagaaga
241 accagtcatt aggtatgagg ttaagggtgg gatctctggc ctgcccgagc tcacaacagt
301 cccccaaccg gatgtggcca acacggcatt cagtgtccca ccgctgagct tgagagaaaa
361 cagggaggcc aaggagccgc tgacaggggc aatattggag atgtgggatg gagagatata
421 ccactatggc ctgtacgtgg agaaaggctt agtgttgggt gtgcacaaac cacctgcagc
481 tataagcatg gcaaaagtgg agctgacgcc gttgtcattg tactggcgtg tggtctacac
541 cccccaatac ctcatctccc ctgaaactct caggaggctc aacggagagg cattccctta
601 caccgccttt gacaacaact gctatgcctt ttgctgctgg gtgttagacc tcaatgactc
661 atggcttaac aggaggatgg tgcaaagaac aacaggcttc ttcagacctt accaagagtg
721 gaacagaaaa cccctgccta ctatggatga ctccaaaatc aagaaggtgg caaacatatt
781 cctgtgttca ttgtccacgt tgttcaccag acctataaaa gacctcatag gaaaaattaa
841 accattaaac atcttgaaca tcctggcaac gtgtgactgg acattcgccg gaatagtgga
901 gtctctgata ttacttgctg agctctttgg agttttctgg acacccccag atgtgtctgc
961 tatgatcgct cccttacttg aagactacga gttgcaaggg ccagaagacc tcgccgttga
1021 gctcgtacct gtggtaatgg gagggattgg tttggtgttg ggattcacca aagagaaaat
1081 tggcaaaatg ttgtcctcag cagcatcaac gctcagggct tgtaaagatc ttggtgccta
1141 tggcttagag atactcaaat tagtcatgaa gtggttcttc ccaaagaaag aagaggccaa
1201 tgagctagcc atggtgagag ctatagagga tgctgtactg gatcttgagg caatagaaaa
1261 taatcacatg acaactctgt tgaaagacaa agacagccta gcaacctaca tgaaaacact
1321 agacatggaa gaggagaaag ccagaagatt gtccacaaaa tctgcatccc ctgacatagt
1381 tgggacgatc aacgccctgc tggctcgaat agcagcggca aggtcactag tccacagggc
1441 caaggaggag ttatctagca ggataagacc agtagttgtt atgatatctg gcaaaccagg
1501 gataggaaaa actcatttgg ccagggaggt ggcaagaaag gtggcatcca ctctcacagg
1561 ggatcaaaga gtcggactca taccgagaaa cggcgtggac cattgggatg catacaaagg
1621 tgagagagtc gtgctgtggg acgactatgg catgagcaac cccattcatg atgctttgcg
1681 catacaagaa ttggctgata cgtgtcccct caccttaaat tgcgacagaa ttgaaaataa
1741 gggaaaagtt tttgacagtg aagtcataat aattacaaca aaccttgcca atccagctcc
1801 acttgattat gtcaactttg aggcctgttc caggagaatt gatttcctgg tgtacgccga
1861 ggcaccagac gtagaaaagg caaaacgaga ctttcctgga caaccagata tgtggaagga
1921 cgcattcaag tcggactttt cacatatcaa gttgcaactt gcacctcagg gcggctttga
1981 caagaatggc aacaccccac atgggaaagg agtgatgaag accctcacca ccggttccct
2041 gattgcccgt gcatcaggct tactgcatga gaggatggat gaatttgaac tccaaggccc
2101 cacagtcatc accttcaatt tcgaccggaa cagaatcacc gcattcagac aattggctgc
2161 agaaaacaag tatgggttgg tggacaccat gagagttggc aatcaattaa aaggggtgaa
2221 aaccatggaa gaactcaaac aagcaatcaa gaatgtgatc atcaagaggt gccggatcat
2281 ctacggtggc tccacgtatg acctcgaatc tgatggcaag ggcaaagttt tggtggaaaa
2341 ggtcaagaac acctctgtac agaccaacaa cgaattggcc ggagccctgc atcacctcaa
2401 acatgcccga atcaggtact atgtcaaatg tgtgcaagaa gcagtttact ctatcataca
2461 aattgccggc gctgcgtttg tcaccacacg cattgcacgc cgcatgaaca tacaagagct
2521 ttggtcgaag ccaccattag accaaaatga atcagaggct aaggaagagg tccccaagtc
2581 agaagatgac gagttcatca tatcttctaa ggacatcaag gaggaaggaa agaagggcaa
2641 aaacaaaact ggccgtggca agaaacacac tgcattctct agcaagggct tgagcgatga
2701 ggagtatgac gagtacaaga ggataagaga agagagaaat gggaagtact ctatagagga
2761 gtatcttcaa gacagagaca ggtactatga ggaactcgcc atcgccaagg ccacggaaga
2821 agacttctgt gaggaggagg aggtcaaaat ccgtcagagg atcttccgtc ccaccaggaa
2881 acaaaggaag gaagagagga ccacactagg actagtaact ggttcagaaa tcagaaaaag
2941 gaaccctgat gacttcaaac ctaaagggaa actgtgggcc gatgacaaca gaagtgttga
3001 ctacaatgag aaactggact ttgaggcccc cccaagtata tggtctagga ttgtgaattt
3061 tggttctggt tggggcttct gggtatcacc aagcctgttc ataacatcaa ctcatgtaat
3121 ccctgcaggc ataacagagg catttggagt ctccatcaaa caaatccagg tccacaaatc
3181 aggtgaattt tgccggttca gattcccaaa accaattaga ccagatgtga caggaatgat
3241 cttggaagaa ggtgcgcctg agggcaccgt ggcaaccgtg ctcatcaaac gccctaccgg
3301 agagctcatg ccccttgcag ccagaatggg gacacacgca accatgaaaa ttcaaggccg
3361 catggttggc ggacagatgg gtatgttgct cactggttca aatgctaaag gaatggattt
3421 gggaacaact cctggtgatt gtggctgtcc ctacatctac aaaaggggca atgactatat
3481 agtcattggt gtgcacacag cagcagcccg tggtggaaac accgtcatct gtgccacaca
3541 gggaagtgag ggtgaggcaa ctcttgaggg tggagatgac aaaggaacat attgtggggc
3601 acccattcta ggccccgggg gggcaccaaa attgagcacc aaaaccaaat tttggaggtc
3661 atcgaacacg cctcttccac cagggacata tgagcctgcc tacctcggtg gccgcgaccc
3721 gcgtgttaag ggtgggccct ccttgcagca ggtaatgaga gaccagttga aaccattcac
3781 tgaacccagg ggtaaacctc caagaccaag tgtgttggaa gcagccaaac aaaccatcat
3841 caatgtcctc gaacaaaccc tggaccctcc acaaaaatgg acgtacgcac aggcgtgtgc
3901 ttcacttgac aaaaccacct ccagcgggca tccccaccac gtccgaaaga atgaattctg
3961 gaatggtgag accttcactg gtaaattggc agaccaagca tcaaaagcaa acctgatgtt
4021 tgaggaaggt aaacacatga caccagtgta tacagcagcc cttaaggacg agctggtcaa
4081 gactgacaaa gtctatggaa agatcaagaa gagactgctc tggggctctg acttgtccac
4141 catgatccgg tgcgccaggt cctttggtgg gctcatggat gagatgaagg cacactgcat
4201 atcactccca gttcgagttg gcatgaacat gaatgaagat ggtccaataa tatttgagaa
4261 gcactccaga tacaagtacc actatgatgc agactactcc cgctgggatt caacacaaca
4321 gagggcagta ctagcagcag ccttggaaat catggtcagg ttctctgcag agccacaatt
4381 ggcacagata gtcgctgagg atctgctggc ccccagtgtg gtagatgtag gagactttaa
4441 aatttcaata aatgaagggc tcccctctgg tgtaccatgc acttctcaat ggaattccat
4501 cgcacactgg ctgctaaccc tctgtgcctt gtctgaagtc accaaactgt cccctgacat
4561 tgtacaggca aattccatgt tctcatttta cggtgatgac gagattgtca gcaccgatat
4621 aaaattggac cctgaaaagt tgaccaccaa attgaaggag tacggcctga aaccaacccg
4681 cccagacaaa actgaggggc ccctgatcat cagtgaagat ttgaacggac tcacttttct
4741 ccggaggacg gtgactcgtg acccagctgg ctggtttgga aaattggacc aaagttcaat
4801 attgaggcag atgtactgga ctagaggacc aaatcatgaa gaccccaatg agacaatgat
4861 accccactct caaagaccca tacagctcat ggcactgctt ggtgaggctt cccttcacgg
4921 accctctttc tacagcaaaa tcagtaaatt ggtcataact gaactcaaag aaggtgggat
4981 ggacttttac gtgccaaggc aggaacccat gttcaggtgg atgaggtttt ctgacttgag
5041 cacgtgggag ggcgatcgca atctggctcc caattttgtg aatgaagatg gcgtcgaatg
5101 acgccgctcc atctactgat ggtgcagccg gcctcgtgcc agaaagtaac aatgaggtca
5161 tggctcttga acccgtggct ggtgccgcct tggcagcccc ggtcaccggt caaacaaata
5221 ttatagaccc ttggattaga gcaaattttg tccaggcccc caatggcgaa tttacagtct
5281 ctccccgtaa tgcccctggt gaagtgctat taaatctaga gttgggtcca gaattaaatc
5341 cttatctggc acatttagca agaatgtaca acgggtatgc cggtgggatg gaggtgcagg
5401 tcatgttggc tgggaacgcg ttcacagccg gcaagttggt cttcgccgcc gtgccacctc
5461 acttcccggt tgaaaacctt agcccacagc aaattaccat gttccctcat gtgattatag
5521 atgtaaggac cttggaacct gttttattac cactccctga tgttaggaat aatttctttc
5581 actataatca gaaagatgat cccaaaatga gaattgtggc tatgctttac acccccctta
5641 ggtctaatgg ttcaggtgat gatgtgttca cagtttcctg cagggtgttg actagaccct
5701 cccctgattt tgacttcaca tatctggtgc caccaacagt ggaatctaaa acaaaaccat
5761 tcaccctccc aatcctcaca cttggggaac tttccaactc taggttccca gtgtccatag
5821 accagatgta caccagccct aatgaagtta tatcagtgca gtgtcaaaat ggtaggtgca
5881 cattggacgg ggagcttcaa gggacaacac aactccaagt cagtggcatt tgtgctttca
5941 agggggaagt gaccgcccat ttgcacgaca atgatcacct atacaatgtc accatcacaa
6001 acttgaatgg gtcccctttt gacccctccg aggacgttcc tgcccctctg ggcgtgcctg
6061 atttccaggg aagggtcttt ggtatcatct cccaaagaga caaacacaat ggccctgggc
6121 aaaatgaacc agcaaacagg ggacacgacg ctgtggtccc tacttacaca gcacagtaca
6181 ctccaaaatt gggtcaggtt caaattggca catggcagac cgacgatctt acagtcaacc
6241 aaccagtcaa attcacccca gttggactca atgacactga acattttaat caatgggtgg
6301 tccccagata cgctggtgcc ctaaacctca acacaaacct tgccccttct gttgccccag
6361 tatttccagg ggagcgccta cttttcttca gatcatacgt tcccctcaag ggtggttatg
6421 gaaatccagc cattgattgc ctattaccac aagagtgggt gcaacacttc tatcaggagg
6481 ctgccccatc aatgagtgag gtggcccttg tcagatacat taacccggat actggtcggg
6541 cgctgtttga ggccaagctc cacagagctg gtttcatgac agtctcgagc aacaccagtg
6601 ccccggtggt tgtgcctgcc aatgggtact tcagatttga ctcttgggtt aatcaattct
6661 attctctcgc ccccatggga actggaaatg ggcgtagaag ggttcaataa tggctggagc
6721 ttttgtagct ggtcttgcag gggacgtgct cagcaatggg ctcagttcat taattaatgc
6781 aggtgctaat gcaataaatc agagggcaga atttgatttt aatcagaaat tacagcaaaa
6841 ttctttcaat catgataagg agatgttgca ggcccagatc caggcaacta agcagctgca
6901 ggcagacatg atggctataa aacagggggt cctgatcgct ggcggctttt cccctgctga
6961 tgcagccaga ggtgctgtga atgcgcccat gacacaggcg ctggattgga acggcacaag
7021 gtattgggca ccaggttcta tgaggaccac atcttattct ggaaaattta catcaaccgc
7081 cccagtgaga caggccgact tccagcacac ccaaagccgg ccttcgagtg gttcttctgt
7141 gtcctccttt gccactcagt cttcaaggcc aactctgacc acaaccactg ggtcctcaca
7201 tggcacagcc tcatcagatt caactcgcaa cacaagcctc tcccaatcaa cgatctctag
7261 agctacatct aggactagtg agtgggttag agaccaaaat agaaatttgg aaccctacat
7321 gcatggtgcc ttacagacgg cctttgtcac cccaccttcc agcagggcgt ctgacgggac
7381 agtctcaacc gtcccaaaag gtgttttgga ctcctggaca cctgcgttca acacccgcag
7441 gcagccgctc ttcgcacacc tccgtaagag gggggagtca catgcctagt gaaaaggtga
7501 aaatttgttt agaataaatt gattttacct ttc
//