Typing tool
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Typing tool
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Complete norovirus genomes
| LC209479 | GII.2 | |
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| GII.P16 |
ORF1: 1..5093
ORF2: 5074..6702
ORF3: 6702..7481
LOCUS LC209479 7525 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Ehime-45 RNA, nearly
complete genome.
ACCESSION LC209479
VERSION LC209479.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Ehime-45
ORGANISM Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Ehime-45
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7525)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7525
/organism="Norovirus
Hu/GII/JP/2011/GII.P16_GII.2/Ehime-45"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2011/GII.P16_GII.2/Ehime-45"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934305"
/country="Japan: Ehime"
/collection_date="2011"
/note="genotype: GII.P16_GII.2"
gene <1..5093
/gene="POL"
CDS <1..5093
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BBB87055.1"
/translation="MASNDANVAVAYNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ
SAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
AKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKV
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLEDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKTME
ELKQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKH
ARIRYYVRCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEAPK
SEDDEFIISSKDIKEEGKKGKNKTGRGRKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGE
TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKEYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5074..6702
/gene="VP1"
CDS 5074..6702
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB87056.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLSLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDVPAPLGVPDFQGRVFG
IISQRDKHNIPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYVPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6702..7481
/gene="VP2"
CDS 6702..7481
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB87057.1"
/translation="MAGAFMAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGKFTSIAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GFSHGTASSNSTRSTGLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RVSDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESHA"
ORIGIN
1 agatggcgtc taacgacgct aacgttgccg ttgcttacaa caacaacaac gacaaggaaa
61 aatcttcagg tgaaggctta ttcacaaata tgtcttccac cttaaagaaa gccctcgggg
121 cccggcccaa acagtccgcc ccgagggaca actcacaaaa gcccccaaga ccaccaactc
181 ccgagttggt taagaggata ccccctcccc cacctaatgg tgaagaagaa gagccagtca
241 ttaggtatga ggttaagagt gggatctctg gcctgcccga gctcacaaca gtcccccaac
301 cggatgtggc caacacggca ttcagtgtcc caccgctgag cttgagagaa aacagggagg
361 ccaaggaacc gctgacaggg gcaatattag agatgtggga tggagagata taccactatg
421 gcctgtacgt ggagaaaggc ttagtgttgg gtgtgcacaa accacctgca gctataagca
481 tggcaaaagt ggagctgacg ccgttgtcat tgtactggcg cgtggtctac accccccaat
541 acctcatctc ccctgaaact ctcaggaggc tcaacggaga ggcattccct tacaccgcct
601 ttgacaacaa ttgctatgcc ttttgctgct gggtattaga cctcaatgac tcatggctta
661 acaggaggat ggtacaaaga acaacaggct tcttcagacc ttaccaagag tggaacagaa
721 aacccctgcc tactatggat gactccaaaa tcaagaaggt ggcaaacata ttcctgtgtt
781 cattgtccac gttgttcacc agacctataa aagacctcat aggaaaagtt aaaccattaa
841 acatcttgaa catcctggca acgtgtgact ggacattcgc cggaatagtg gagtctctga
901 tattacttgc tgaactcttt ggagttttct ggacaccccc agatgtgtct gctatgatcg
961 ctcccttact tgaagactac gagttgcaag ggccagaaga cctcgccgtt gagctcgtac
1021 ctgtggtaat gggagggatt ggtttggtgt tgggattcac caaagagaaa attggcaaaa
1081 tgttgtcctc agcagcatca acgctcaggg cttgtaagga tcttggtgcc tatggcttag
1141 agatactcaa attggtcatg aagtggttct tcccaaagaa agaagaggcc aatgagctag
1201 ccatggtgag agctatagag gatgctgtgt tggatcttga ggcaatagaa aataatcaca
1261 tgacaactct gttgaaagac aaagacagcc tagcaaccta catgaaaaca ctagacatgg
1321 aagaggagaa agccagaaga ttgtccacaa aatctgcatc ccctgacata gttgggacga
1381 tcaacgccct gctggctcga atagcagcgg ctaggtcatt agtccacagg gccaaggagg
1441 agttatctag caggataaga ccagtagttg ttatgatatc tggcaaacca gggataggta
1501 aaactcattt ggccagggag gtggcaagaa aggtggcatc cactctcaca ggggatcaaa
1561 gagtcgggct cataccgaga aacggtgtgg accactggga tgcatacaaa ggtgagagag
1621 tcgtgctgtg ggacgactat ggcatgagca accccattca tgatgctttg cgcatacaag
1681 aattggctga tacgtgtccc cttaccttaa attgcgacag aattgaaaat aaggggaaag
1741 tttttgacag tgaagtcata ataattacaa caaaccttgc caatccagct ccacttgatt
1801 atgtcaactt tgaggcctgt tccaggagaa ttgacttcct ggtgtacgcc gaggcaccag
1861 aagtagaaaa ggcaaaacga gactttcctg gtcaaccaga tatgtggaag gacgccttca
1921 agtcagactt ttcacatatc aagttgcaac ttgcacctca gggcggcttt gacaagaatg
1981 gtaacacccc acatgggaaa ggagtgatga agaccctcac caccggttcc ctgattgccc
2041 gtgcatcagg cttactgcat gagaggatgg atgaatttga actccaaggc cccacagtta
2101 ccaccttcaa tttcgaccgg aacagaatca ccgcattcag acaattggcc gcagaaaaca
2161 agtatgggtt ggtggacacc atgagagttg gcaatcaatt aaaaggggtg aaaaccatgg
2221 aagaactcaa acaagcaatc aagaatgtga tcatcaagag gtgccggatc atctacggtg
2281 gctccacgta tgaccttgaa tctgatggca agggcaaagt tttggtagaa aaggtcaaga
2341 acacctctat acagaccaac aacgagttgg ctggagccct gcatcacctc aaacatgccc
2401 gaatcaggta ttatgtcaga tgtgtgcaag aagcagttta ctctatcata caaattgccg
2461 gcgctgcgtt tgtcaccaca cgcattgcac gccgcatgaa catacaagag ctttggtcga
2521 agccaccatt agaccaaaat gaatcagagg ctaaggaaga ggcccccaag tcagaagatg
2581 acgagttcat catatcttct aaggacatca aggaggaagg aaagaagggc aaaaacaaaa
2641 ctggccgtgg caggaaacac actgcattct ctagcaaggg cttgagcgat gaggagtatg
2701 acgagtacaa gaggataaga gaagagagaa atgggaagta ctctatagag gagtatcttc
2761 aagacagaga caggtactat gaggaactcg ccatcgccaa ggccacggaa gaagacttct
2821 gtgaggagga ggaggtcaaa atccgtcaga ggatcttccg tcccaccagg aaacaaagga
2881 aggaagagag ggccacacta ggactagtaa ctggttcaga aatcagaaaa agaaaccctg
2941 atgacttcaa acctaaaggg aaactgtggg ccgatgacaa cagaagtgtt gactacaatg
3001 agaaactgga ctttgaggcc cccccaagca tatggtctag gattgtgagt tttggttctg
3061 gttggggctt ctgggtatca ccaagcctgt tcataacatc aactcatgta atccctgcag
3121 gcataacaga ggcatttgga gtccccatca aacaaatcca ggtccacaaa tcaggtgaat
3181 tttgccggtt cagattccca aaaccaatta gaccagatgt gacaggaatg atattggaag
3241 aaggtgcgcc tgagggcacc gtggcaaccg tactcatcaa acgccctacc ggagagctca
3301 tgccccttgc agccagaatg gggacacacg caaccatgaa gattcaaggc cgcatggttg
3361 gcggacagat gggtatgttg ctcactggtt caaatgctaa aggaatggat ttgggaacaa
3421 ctcctggtga ttgtggctgc ccctacatct acaaaagggg caatgactat atagtcattg
3481 gggtgcacac agcagcagcc cgtggtggaa acaccgtcat ctgtgccaca cagggaagtg
3541 agggtgaggc aactcttgag ggtggagatg acaaaggaac atactgtgga gcacccattc
3601 taggccccgg gggggcacca aaattgagca ccaaaaccaa attttggagg tcatcgaaca
3661 cgcctcttcc accagggaca tatgagcctg cctacctcgg tggccgtgac ccgcgtgtta
3721 agggtgggcc ctccttgcag caggtaatga gagaccagtt gaaaccattc actgaaccca
3781 ggggtaaacc tccaagacca agtgtgttgg aggcagccaa acaaaccatc atcaatgtcc
3841 tcgaacaaac cctggaccct ccacaaaaat ggacatacgc acaggcgtgt gcttcacttg
3901 acaaaaccac ctccagcggg catccccacc acgtccgaaa gaatgaattc tggaatggtg
3961 agaccttcac tggtaaattg gcagaccaag catcaaaagc aaatctgatg tttgaggaag
4021 ggaaacacat gacaccagtg tatacagcag ccctcaagga cgagctggtc aagactgaca
4081 aggtctatgg aaagatcaag aagagactgc tctggggctc tgacttgtcc accatgatcc
4141 ggtgcgccag gtcctttggt gggcttatgg atgagatgaa ggcacactgc atatcactcc
4201 cagtccgagt tggcatgaac atgaatgaag atggtccaat aatatttgag aagcactcca
4261 gatacaagta ccactatgat gcagactact cccgctggga ttcaacacaa cagagggcag
4321 tactagcagc agccttggaa atcatggtca ggttctctgc agaaccacaa ttggcacaga
4381 tagtcgctga ggatctgctg gcccccagtg tggtagatgt aggagacttt aaaatttcaa
4441 taaatgaggg gctcccctct ggtgtaccat gcacttctca atggaattcc atcgcacact
4501 ggctgctaac cctctgtgcc ttgtctgaag tcaccaaact gtcccctgac attgtacagg
4561 caaattccat gttctcattt tacggtgatg acgagattgt cagcaccgat ataaaattgg
4621 accctgaaaa gttaaccacc aaattgaagg agtatggcct gaaaccaact cgcccagaca
4681 aaaccgaggg acccctgatc atcagtgagg atttgaatgg actcactttc ctccggagga
4741 cggtgactcg tgacccagct ggctggtttg gaaaattgga ccaaagctca atattgaggc
4801 agatgtactg gactagagga ccaaatcatg aagaccccaa tgagacaatg ataccccact
4861 ctcaaagacc catacagctc atggcactgc ttggtgaggc ctcccttcac ggaccctctt
4921 tctacagcaa aatcagtaaa ttggtcataa ctgaactcaa agaaggtggg atggactttt
4981 acgtgccaag acaggaaccc atgttcaggt ggatgaggtt ttctgacttg agcacgtggg
5041 agggcgatcg caatctggct cccaattttg tgaatgaaga tggcgtcgaa tgacgccgct
5101 ccatctactg atggtgcagc cggcctcgtg ccagaaagta acaatgaggt catggctctt
5161 gaacccgtgg ctggtgccgc cttggcagca ccggtcaccg gtcaaacaaa tattatagac
5221 ccttggatta gagcaaattt tgtccaggcc cccaatggcg aatttacagt ctctccccgt
5281 aatgcccctg gtgaagtgct attaagtcta gaattgggtc cagaattaaa tccttatctg
5341 gcacatttag caagaatgta caacgggtat gccggtggga tggaggtgca ggtcatgttg
5401 gctgggaatg cgttcacagc cggcaagttg gtcttcgccg ctgtgccacc tcacttcccg
5461 gttgaaaacc ttagcccaca gcaaattacc atgttccctc atgtgattat agatgtaagg
5521 accttggaac ctgttttatt accactccct gatgttagga ataatttctt ccattataat
5581 cagaaagatg atcccaaaat gagaattgtg gctatgcttt atacccccct tagatctaat
5641 ggttcaggtg atgatgtgtt cacagtttcc tgcagggtgt tgaccagacc ctcccctgat
5701 ttcgatttca catatctggt gccaccaaca gtggaatcta aaacaaaacc attcaccctc
5761 ccaatcctca cacttgggga actttccaat tctaggttcc cagtgtccat agatcagatg
5821 tacaccagcc ctaatgaagt tatatcagtg cagtgtcaaa atggtaggtg cacattggac
5881 ggggaacttc aagggacaac acaactccaa gtcagtggca tttgtgcttt caagggggaa
5941 gtgaccgccc atttgcatga caatgatcac ctatacaatg tcaccatcac aaacttgaat
6001 gggtcccctt ttgacccctc cgaggacgtt cctgcccctc tgggcgtgcc tgatttccag
6061 ggaagggtct ttggtattat ctcccaaaga gacaaacata atatccctgg gcataatgaa
6121 ccagcaaaca ggggacacga cgctgtggtc cctacttaca cagcacagta cactccaaaa
6181 ttgggccaga ttcaaattgg cacatggcag accgatgatc ttacagtcaa ccaaccagtc
6241 aaattcaccc cagttggact caatgacact gaacatttta atcaatgggt ggtccccaga
6301 tacgctggtg ccctaaacct caacacaaac cttgcccctt ctgttgctcc ggtatttcca
6361 ggggagcgct tgcttttctt cagatcatac gttcccctca agggtggtta tggaaatcca
6421 gccattgatt gcctattacc acaagagtgg gtgcaacact tctatcagga agctgcccca
6481 tcaatgagtg aggtggccct tgtcagatac atcaacccgg atactggtcg ggcactgttt
6541 gaggccaagc tccacagagc tggtttcatg acagtctcga gcaacaccag tgccccggtg
6601 gttgtgcctg ccaatgggta cttcagattt gactcttggg ttaatcagtt ctattctctc
6661 gcccccatgg gaactggaaa tgggcgtaga agggttcaat aatggctgga gcttttatgg
6721 ctggtcttgc aggggacgtg ctcagcaatg ggctcagttc attaattaat gcaggtgcta
6781 atgcaataaa tcagagggca gaatttgatt ttaatcagaa attacagcaa aattctttca
6841 atcatgataa ggagatgttg caggcccaga ttcaggcaac taagcagctg caggcagaca
6901 tgatggctat aaaacagggg gtcctgaccg ctggcggctt ttcccctgct gatgcagcca
6961 gaggtgctgt gaatgcgccc atgacacagg cgctggattg gaacggcaca aggtattggg
7021 caccaggctc tatgaggacc acatcttatt ctggaaaatt cacatcaatc gccccagtga
7081 ggcaggccga cttccagcac acccaaagcc ggccttcgag tggctcttct gtgtcctcct
7141 ttgccactca gtcttcaagg ccaactctga ccacaaccac tgggttctca catggcacag
7201 cctcatcaaa ttcaactcgc agcacaggcc tctcccaatc aacggtctct agagctacat
7261 ctaggactag tgagtgggtt agagatcaaa atagaaattt ggaaccctac atgcatggtg
7321 ccttacagac ggcctttgtc accccacctt ccagcagggt gtctgacggg acagtctcaa
7381 ccgtcccaaa aggtgttttg gactcctgga cacctgcgtt caacacccgc aggcagccgc
7441 tctttgcaca cctccgtaag aggggggagt cacatgccta gtgaaaaggt gaaaatttgt
7501 ttagaataaa ttgattctac ctttt
//