Typing tool
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Typing tool
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Complete norovirus genomes
| LC209476 | GII.2 | |
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| GII.P16 |
ORF1: 1..5084
ORF2: 5065..6693
ORF3: 6693..7472
LOCUS LC209476 7532 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2013/GII.P16_GII.2/Ehime-8 RNA, nearly complete
genome.
ACCESSION LC209476
VERSION LC209476.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2013/GII.P16_GII.2/Ehime-8
ORGANISM Norovirus Hu/GII/JP/2013/GII.P16_GII.2/Ehime-8
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7532)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7532
/organism="Norovirus Hu/GII/JP/2013/GII.P16_GII.2/Ehime-8"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2013/GII.P16_GII.2/Ehime-8"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934302"
/country="Japan: Ehime"
/collection_date="2013"
/note="genotype: GII.P16_GII.2"
gene <1..5084
/gene="POL"
CDS <1..5084
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BBB87046.1"
/translation="SNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPA
PRDNSQKPPRPPTPELVKRIPPPPPNGEEEPVIRFEVKSGISGLPDLTTVPQPGATNT
AFSVPPLSLRENREAKEPLTGAIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMAKV
ELAPLSLYWRVVYTPQYLISPDTLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLNR
RMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIGKIKPL
NILNILATCDWTFAGIVESLILFAELFGVYWTPPDVSAMIAPLLGEYELQGPEDIAVE
LVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE
ANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMKTLDLEEEKARKLSTKSAS
PDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVAKKV
ASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTL
NCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD
FPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL
HERMDEFELQGPTITTFNFDRNRVTAFRQLAAENKYGLVDTMRIGNQLKGVKTMEELK
QAIKNVSIKRCQIIYHGSTFDLESDGKGEVTVEKVKNTTVQTNNELAGALHHLRSARI
RYYVKCVQEAIYSILQIAGAAFVTTRIARRMNIQELWSKPPLDQSEPEVKEETPKLED
DEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDRYYEELAIAKATEENFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIR
KRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITS
THVIPSGVTEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVL
IKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYI
YKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPK
LSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPR
PSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNGETFT
GRLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMVRC
ARAFGGLMDEMKAHCISLPIRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRA
ILAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQWNSI
SHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLREYGLKP
TRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPNHEDPN
ETMIPHSQRPMQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5065..6693
/gene="VP1"
CDS 5065..6693
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB87047.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
VISQRDKHNTPGHNEPANRAHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTDHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGTPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
gene 6693..7472
/gene="VP2"
CDS 6693..7472
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB87048.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQVQATKQLQADMMAIKQGVLAAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTAYSGRFTSTAPVRQADFQHTQNRPSSGSSVSSFATQSSRPTLTTTT
GSSYGTASSNSTRSTNLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 cgtctaacga cgctaccgtt gccgttgctt gcaacaacaa caacgacaag gaaaaatctt
61 cgggtgaagg cttatttaca aatatgtctt ccaccctaaa gaaagccctc ggggctcggc
121 ctaaacagcc tgccccgagg gacaactcac aaaaaccccc aagaccacca acgcccgagt
181 tggttaaaag gataccccct cccccaccta atggcgaaga agagccagtc attaggtttg
241 aggtcaagag tggaatttct ggcctgcccg atctcacgac agtccctcaa ccaggtgcga
301 ccaatacggc attcagtgtt ccaccgttga gcttaagaga aaacagggag gccaaggaac
361 cgctaactgg ggcaataata gagatgtggg atggagagat ataccactat ggtttgtatg
421 tggagaaagg cctagtcttg ggtgtgcaca aaccacccgc agctataagc atggcaaaag
481 tggaattagc accgctgtcg ttatactggc gtgtggtgta cactccccaa tacctcatct
541 cccctgacac tctcaagagg ctcaacggag aggcattccc ctacaccgcc tttgataaca
601 actgttatgc cttttgctgc tgggtgttag accttaatga ctcatggctc aacagaagaa
661 tggtgcagag gacgacaggc ttcttcagac cctaccaaga gtggaacaga aagcccctac
721 ccaccatgga tgattccaaa attaagaagg tggcaaacat attcctatgt tcattatcta
781 cactgttcac caggcctata aaagacatca taggaaaaat caaaccactg aatatcttaa
841 acattctggc aacgtgtgat tggacgttcg ccggaattgt agagtctcta atattatttg
901 ctgaactctt tggagtttac tggacacccc cagatgtgtc tgctatgatc gctcccttac
961 ttggcgaata cgagttgcag ggaccagaag acatcgccgt tgagctcgta cctgtagtga
1021 tgggggggat tggtttggtg ctaggattca ccaaagagaa aattggcaaa atgctgtcct
1081 cagcagcgtc aacgctcagg gcttgcaaag atcttggtgc ctatggttta gagatactca
1141 aattagtcat gaaatggttt ttcccaaaga aagaagaagc caatgaacta gccatggtga
1201 gagcaataga ggatgctgtt ctggatcttg aggcgataga aaacaatcac atgacagccc
1261 tgctgaaaga taaagacagc cttgcaactt acatgaaaac actggaccta gaggaggaga
1321 aagccagaaa actatccacg aaatccgcat ctcctgacat agttgggaca atcaacgccc
1381 tgctggctcg aatagcggcg gctagatcac tagtccacag ggccaaggag gagctatcta
1441 gcagaatcag accagttgtc gttatgatat ctggcaaacc agggataggc aagacccact
1501 tggccaggga ggtggcgaaa aaggtggcgt ccactctcac aggagatcaa agagttggac
1561 tcataccgag aaacggtgtg gaccattggg atgcatacaa aggtgaaagg gtcgtgttgt
1621 gggatgacta tggcatgagt aaccctattc atgatgcact gcgcatacag gaattggccg
1681 acacatgccc cctcaccttg aattgtgaca gaattgaaaa taagggaaaa gtttttgata
1741 gtgatgttat aataattaca acaaaccttg ccaacccagc tcctcttgat tatgtcaact
1801 ttgaggcctg ttccaggaga attgacttcc tggtgtacgc cgaagcgcca gaagtggaaa
1861 aggcaaaacg ggatttccct ggtcaaccag atatgtggaa ggacgccttc aaagcggact
1921 tctcgcacat caagttgcaa cttgcgcctc agggcggctt tgacaagaat ggcaacaccc
1981 cacatgggaa aggagtgatg aagaccctta ccaccggttc tctgatcgcc cgtgcgtcag
2041 gtttgctaca tgagaggatg gatgaatttg aacttcaggg ccccacaatc accactttta
2101 actttgaccg gaacagagtc accgccttca gacaactggc tgctgagaac aaatatgggc
2161 tggtggacac catgaggatt ggcaatcaat tgaaaggggt gaaaaccatg gaagaactca
2221 agcaagctat caagaatgtg tccatcaaga ggtgccagat tatctaccat ggatccacgt
2281 ttgaccttga gtctgatggc aagggtgaag ttacagtgga aaaggtcaaa aacaccactg
2341 ttcagaccaa caacgaattg gccggagccc tgcaccacct cagaagtgct cgaatcaggt
2401 attatgtcaa atgtgtgcaa gaggcaatct attccatcct acaaattgcc ggcgccgcgt
2461 tcgtcaccac acgcattgca cgccgcatga atatacaaga gctttggtca aagccaccat
2521 tagatcaaag cgagccagag gttaaggagg agacccccaa gttagaggat gatgaattca
2581 tcatctcctc caaggacatt aaggaggaag gaaagaaggg caaaaacaaa actggccgtg
2641 gcaagaaaca cactgcattc tctagcaagg gcttgagcga tgaggagtat gacgagtata
2701 agaggataag agaagagaga aatgggaagt actctataga ggagtatctt caagacaggg
2761 acaggtacta tgaagaactc gccatcgcca aggccacgga agaaaacttt tgtgaggagg
2821 aagaaataaa aatccgccag cggatctttc gtcccactag aaaacaaagg aaggaagaaa
2881 gggccacgtt agggctagtg actggttcgg aaatcagaaa aagaaaccct gatgacttca
2941 aacctaaagg gaaattgtgg gccgacgaca acagaagtgt tgactacaat gaaaaactgg
3001 actttgaggc ccccccaagc atatggtcta ggatcgtaag ctttggttca ggttggggct
3061 tctgggtgtc accaagcctg tttataacat caactcatgt gatcccttcg ggtgtaacag
3121 aggcatttgg agtccctatc aaacagattc aagtccacaa atcgggcgag ttttgtcggt
3181 tcagattccc aaaaccaatt agaccagatg taacaggaat gatcctggag gaaggtgcgc
3241 cagagggcac cgtagcaacc gtgctcatca agcgccccac tggagaactt atgcccctcg
3301 cagctagaat gggaacacac gcaaccatga aaattcaggg ccgcatggtt ggtgggcaga
3361 tgggcatgct gctcactggt tcaaatgcta agggtatgga tctggggaca actcccggtg
3421 actgtggctg cccgtatatt tacaaaaggg gcaatgacta catagtcatt ggagtgcaca
3481 cagcagcagc ccgaggtggt aacactgtca tctgtgccac acagggaagt gagggtgaag
3541 cgaccctcga gggtggagac gacaaaggaa catactgtgg ggcacccatc ctgggccctg
3601 gaggggcgcc aaagttaagc acaaaaacca aattttggag atcatcaaac acgccccttc
3661 caccagggac atatgagcct gcctaccttg gcggtcgtga tccgcgtgta aagggtgggc
3721 cttccctaca acaagtcatg agagatcagc taaagccctt caccgagccc aggggtaaac
3781 ccccgagacc tagtgtgctg gaggcagcca aacagaccat catcaacgtt ctcgagcaaa
3841 ctttggatcc tccacaaaaa tggacgtacg cacaggcgtg cgcttcactt gataaaacca
3901 cctctagtgg gcacccccat cacgctcgaa agaatgaatt ctggaacggt gagaccttta
3961 ccggtaggct ggcagaccaa gcatcaaaag caaacttaat gtttgaggaa gggaaacata
4021 tgacaccagt gtacacagca gcccttaagg atgagttggt taaaaccgac aaaatctatg
4081 gaaagatcaa gaaacgcctg ctttggggct ctgatttatc caccatggtc cgatgtgcta
4141 gggcctttgg tggtctcatg gacgagatga aggcgcactg catatcgctc ccaatccgag
4201 ttggcatgaa tatgaatgag gatggcccaa taatatttga gaagcactcc agatataaat
4261 atcactatga tgcagattac tctcgctggg actcaacaca acagagggct attctagcag
4321 cggccttgga aataatggtc agattctctg cagaaccgca actggcccaa acagttgctg
4381 aggatctgct ggcccccagt gtagtagatg tcggagactt caaaatttca ataaatgagg
4441 gactcccttc tggtgtacca tgcacttccc agtggaactc catctcacac tggttactaa
4501 ctctctgtgc tttgtctgaa gtcaccaatc tgtctcctga catcgtgcag gcaaactcta
4561 tgttctcatt ttacggtgat gacgagatcg tcagcaccga tataaaattg gaccctgaaa
4621 agttaaccac caaattgagg gagtatggtc taaaaccaac tcgcccagac aaaaccgagg
4681 ggcccttgat catcagcgag gatttggacg gtctcacctt cctccggagg acggtttctc
4741 gtgacccagc tggttggttt ggaaagttag atcaaagctc aatactaagg cagatgtatt
4801 ggaccagagg accaaaccat gaagacccca atgagacaat gataccccac tctcaaagac
4861 ccatgcaact catggcacta cttggtgagg cctcccttca cggaccctct ttctacagca
4921 agattagtaa attggtcata actgaactca aagaaggtgg gatggacttt tacgtgccaa
4981 gacaggaacc catgttcaga tggatgaggt tttctgactt gagcacgtgg gagggcgatc
5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga atgacgccgc tccatctact
5101 gatggtgcag ccggcctcgt gccagaaagt aataatgagg tcatggctct tgaacccgtg
5161 gctggtgccg ccttggcagc cccagtcacc ggtcaaacaa atataataga cccttggatt
5221 agagcaaatt ttgttcaggc ccccaatggt gaatttacag tctctcctcg taactcccct
5281 ggtgaagtgc tactgaatct agagttgggt ccagaattaa atccttatct ggcacattta
5341 gcaagaatgt acaatgggta tgccggtggg atggaggtgc aggtcatgtt ggctgggaat
5401 gcgttcacag ccggcaagtt agtcttcgcc gctgtgccac cccactttcc ggtcgaaaac
5461 cttagcccac agcaaattac catgttccct catgtgatta tagatgtcag gactttggaa
5521 cctgttttat taccactccc tgatgttagg aataacttct tccattacaa tcagaaagat
5581 gatcccaaga tgagaattgt ggctatgctt tatacccccc ttaggtctaa tggttcaggc
5641 gatgatgtgt ttacagtctc ctgcagggtg ttgactagac cctcccctga ttttgatttc
5701 acatatctgg tgccaccaac agtggaatct aaaacaaaac cattcactct cccaatcctc
5761 acgcttgggg aactttccaa ttctagattc ccagtgtcca tagaccagat gtacaccagc
5821 cccaatgaag tcatatcagt gcagtgccaa aatggcaggt gcacactgga tggggaactc
5881 caaggaacaa cacaactcca agtcagtggc atttgtgctt tcaagggaga agtgactgcc
5941 cacttgcatg acaatgatca cctgtataat gtcaccatca caaatttgaa tgggtcccct
6001 ttcgacccct ccgaggacat ccccgcccct ctgggcgtac ctgactttca gggaagggtc
6061 tttggtgtca tctcccaaag agacaaacat aacacccctg gacataatga accagcaaac
6121 agggcacacg atgccgtggt ccctacttat acagcacagt ataccccaaa attgggtcag
6181 atccaaattg gcacatggca gactgacgat ctcacagtca accaaccagt caaattcacc
6241 ccagttggac ttaatgacac tgaccatttt aaccaatggg tggtccccag gtatgctggt
6301 gccctaaacc ttaacacaaa ccttgcccct tctgttgctc cagtatttcc aggggagcgt
6361 ctgctctttt tcagatcata catccccctc aagggcggtt atggaactcc agccatcgat
6421 tgcctactac cacaagagtg ggtgcaacat ttctatcagg aagcagcccc ttcgatgagt
6481 gaggtggccc ttgtcagata catcaacccg gatactggtc gggcactgtt tgaggccaaa
6541 ctccacagag ctggtttcat gacagtctca agcaacacca gtgccccggt ggttgtgcct
6601 gccaacggat atttcaggtt tgattcttgg gtgaaccaat tctattctct cgcccccatg
6661 ggaactggaa atgggcgcag aaggatccaa taatggctgg agcttttgta gctggtcttg
6721 caggggacgt gctcagcaat gggctcagtt cattaattaa tgcaggtgct aatgcaataa
6781 atcagagggc agaatttgat ttcaatcaga gattacagca aaattctttc aatcatgata
6841 aggagatgtt gcaggctcag gtccaggcaa ctaagcagct gcaggcagat atgatggcta
6901 taaaacaggg ggtcctggcc gctggcggct tttcccctgc tgatgcagcc agaggtgctg
6961 tgaacgcgcc catgacacag gcgctggatt ggaacggcac aaggtattgg gcaccaggct
7021 ccatgaggac tacagcctac tctgggagat tcacatcaac cgccccagtg aggcaggctg
7081 atttccagca cacccaaaac cggccttcaa gtggttcttc tgtgtcctcc tttgctactc
7141 agtcttcaag gccgaccctg actacaacca ctgggtcctc atatggcaca gcctcatcaa
7201 attcgactcg cagtacaaat ctctcccaat caacggtctc cagggctaca tctaggactg
7261 gtgaatgggt tagagaccaa aatagaaatt tggaacctta catgcatggt gccttacaga
7321 cggcctttgt caccccacct tccagcaggg cgtctgatgg gacggtctca accgttccaa
7381 aaggtgtttt ggactcctgg acacctgcgt ttaacacccg caggcagccg cttttcgcac
7441 acctccgtaa gaggggggag tcacaagctt agtgaaaagg tgaaaattta tttaaaatgg
7501 attgattttt accttttaaa aaaaaaaaaa aa
//