Typing tool
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Typing tool
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Complete norovirus genomes
| LC209473 | GII.2 | |
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| GII.P2 |
ORF1: 1..5090
ORF2: 5071..6699
ORF3: 6699..7478
LOCUS LC209473 7522 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2010/GII.P2_GII.2/Hiroshima-19 RNA, nearly
complete genome.
ACCESSION LC209473
VERSION LC209473.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2010/GII.P2_GII.2/Hiroshima-19
ORGANISM Norovirus Hu/GII/JP/2010/GII.P2_GII.2/Hiroshima-19
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7522)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7522
/organism="Norovirus
Hu/GII/JP/2010/GII.P2_GII.2/Hiroshima-19"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2010/GII.P2_GII.2/Hiroshima-19"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934299"
/country="Japan: Hiroshima"
/collection_date="2010"
/note="genotype: GII.P2_GII.2"
gene <1..5090
/gene="POL"
CDS <1..5090
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BBB87037.1"
/translation="SNDASAAAAANSNNDNAKSSSDGMLNNMAVTLKRALGARPKQPA
PREKPPRPPRPPTPELIKRIPPPPPNDGDEPTVMFSTVGGVSGLPELTTVGQPPEANT
AFSVPPLSLRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISVAKV
ELTPLSLYWRPVYTPQYLIPPDTLRKLHGELFPYTAFENNCYAFCCWVLDLNDSWLSR
RMISRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDIIGKLKPL
NILNILASCDWTFAGIVESLILLAELFDVFWTPPDVSAMIAPLLGDYELQGPEDIAVE
LVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKDE
ANELAMVRAIEDAVLDLEAIENNHMTTLLKDKNSLAAYMKTLDMEEEKARKLSTKSAS
PDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGKPGIGKTHLARELAKKI
ASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTL
NCDRIENKGKVFDSDAIIITTNLVNPAPLDYVNFEACSRRIDFLVYADAPEVEKAKRD
FPGQPDMWKDAYRSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTASSLVARASGLL
HERLDEYELQGPSLSTFNFDRNKIAAFRQLAAENKYGLVDTMRVGNQLRNVTTMDELK
KAIKNITIRKCQIVYGGNTYTLESDGKGKVVVERVQSVSVQINNEIAGAVHHLRCARI
RYYVKCVQEAIYSLLQIAGTVFVTSRIVSRMNIQNLWSRPLTEDADEATMKEGCPKPR
EEEEFVVSSDDIKPEGKKGKNKSGRGKKHTAFSSKGLSDEEYEEYKRIREERNGKYSI
EEYLQDRDKYYEEVAIARATEEDFCEEEEVKIRQRIFRPTRKQRKEERANLGLVTGSE
IRKRNPDDFKPRGKLWADDDRSVDYNERISFEAPPSIWSRIVNFGSGWGFWVSPSLFI
TSTHVIPQGITEAFGVPIRQVQIHKSGEFCRLRFPKPIRTDVSGMILEEGAPEGTVAT
ILIKRTTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCP
YIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNA
PKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKP
PKPSVLEAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGYPHHVRKNEHWNGES
FTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKVYGKIKKRLLWGSDLATMV
RCARSFGGLMDELKAHCVTLPIRVGMNMNEDGPIVFEKHSRYRYHYDADYSRWDSTQQ
RAVLAAAMEIMVKFSAEPQLAQIVAEDLLSPSVVDVGDFKISINEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTDLSPDIVQANSLFSFYGDDEIVSTDIKLDPEKLTGKLREYGL
KPTRPDKTEGPLIISEDLNGLTFLRRAVTRDPAGWFGKLDQSSILRQLYWTKGPNHED
PFESMIPHSQRPIQLMSLLGEAALHEPSFYSKISKLVISELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPSLVNEDGVE"
gene 5071..6699
/gene="VP1"
CDS 5071..6699
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB87038.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPIENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNITITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVSQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6699..7478
/gene="VP2"
CDS 6699..7478
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB87039.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAISQRAEFDFNQRLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGRFTSTAPVRQADFQHTQSRPSSGSSVSSFTTQSSRPILTTTT
GSSHGTALSNSTRSTNLSQSTVSRAASRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 cgtctaacga cgcttctgct gccgctgctg caaacagcaa caacgacaac gcaaaatctt
61 caagtgacgg aatgcttaac aacatggccg tcactcttaa acgagccctc ggggcccggc
121 ccaaacagcc ggccccaagg gaaaaacccc caagaccccc tagaccacca acaccagaac
181 taatcaaaag aatccccccc ccaccaccca atgatgggga cgaaccaacc gtgatgttta
241 gcactgtagg tggtgtgtct ggcctacctg agctcacaac agtcggccaa ccacctgaag
301 ctaacacggc ctttagtgtg cctcccctca gtctaaggga aaacagggac gctaaggaac
361 cgttgactgg aactattctg gaaatgtggg atggggaaat ttatcattat ggactgtatg
421 tggaaagagg gcttgtgtta ggcgtgcaca agccgccagc tgccatcagc gtagccaaag
481 tggaactgac gcccctctca ctgtactgga gacctgtgta cacgcctcag taccttatac
541 ctcctgacac cttgaggaaa ctccatggtg aattgtttcc ctatacagcc tttgaaaaca
601 actgttatgc cttctgctgt tgggttttgg accttaacga ctcatggtta agcaggagga
661 tgattagtag gaccactggc tttttcaggc cctaccaaga gtggaacagg aagccccttc
721 caactatgga tgactcaaaa ttgaagaagg tcgcaaacat cgttctgtgt gcattgtcat
781 cattgttcac taggcccatc aaggatataa ttggcaaact taaacccctc aacatcctaa
841 acattctggc ctcatgcgac tggaccttcg ctggcatagt agagtcacta atcctcttgg
901 ctgaactctt tgatgtattc tggacacccc cagatgtgtc tgcaatgatc gcacccctcc
961 tcggtgacta cgagctacaa ggccccgaag acatcgctgt ggagctcgtg cccgttgtga
1021 tgggtgggat aggtctggtg ttgggattca ccaaagagaa aataggcaag atgctctcct
1081 ctgcagcatc aactctgagg gcatgcaaag atcttggagc ctacggattg gagatcctaa
1141 aactagtcat gaaatggttt ttcccaaaga aggatgaggc caacgaactg gctatggtta
1201 gagccattga agacgctgta ttagacctgg aggccattga aaacaaccat atgaccactc
1261 tgttgaaaga caagaacagc cttgcagcct acatgaagac cttagatatg gaagaggaaa
1321 aagctaggaa gttatccacc aaatcagcct cccctgacat tgtgggcacc ataaacgccc
1381 tgctggctag gatcgctgcc gcgcgttctt tagttcatag ggccaaggag gagctctcca
1441 gcagaccaag accggtcgtt ttgatgatct ctggcaaacc agggatagga aagacccact
1501 tggccaggga actggcaaag aaaattgcct cgacactcac aggagaccaa agggtgggcc
1561 tcattccacg gaatggagtc gaccactggg atgcctacaa gggtgagaga gtggtgctct
1621 gggatgatta cgggatgagc aaccccatcc acgatgcgct gaggttgcag gaactggcgg
1681 atacatgtcc attaactctg aattgtgaca ggattgaaaa caaagggaag gtttttgata
1741 gcgacgcgat cataatcacc accaatttgg tcaatcctgc gccgctggat tatgtcaact
1801 ttgaggcctg ctccaggcgt atagacttcc ttgtgtatgc tgatgcccca gaagtcgaga
1861 aagcaaagcg ggacttccct ggtcaaccgg acatgtggaa ggacgcctat cgttctgact
1921 tctcacacat taaactacaa cttgcaccac aaggtgggtt tgacaaaaat ggtaacaccc
1981 cacatggtaa aggagtgatg aagactctca ctgccagttc actggttgcg cgtgcctctg
2041 gtctcttgca cgaaagattg gatgagtacg agttacaggg tccgtccctc tcaaccttca
2101 actttgaccg caacaaaatt gcagcgttta gacaactcgc cgctgaaaat aagtatggtc
2161 tggtggacac gatgagggtg ggcaaccagc tcagaaatgt tacgaccatg gatgaactca
2221 agaaggccat caagaacatc acaatcagaa agtgccagat agtctatggt ggcaacactt
2281 acacgcttga gtctgacggc aagggtaagg ttgtagttga gagggtgcag agcgtcagcg
2341 tgcaaatcaa caatgagatc gctggtgcag tgcaccacct tagatgtgcc aggataaggt
2401 attatgtcaa gtgtgttcaa gaggccatct actcacttct ccaaatcgcc ggcacggtgt
2461 ttgtcacttc acgcatcgta agccgcatga acatccaaaa tttatggtcc aggccattaa
2521 ctgaagatgc agatgaggcc actatgaaag aggggtgtcc caaacctagg gaagaagagg
2581 aatttgtcgt ctcctcagat gacatcaagc cagagggcaa gaaaggtaaa aacaagagtg
2641 gccggggcaa gaaacacacg gcattctcaa gcaaaggtct tagtgatgag gagtacgaag
2701 agtacaaaag gatcagagag gagagaaatg gtaagtactc catagaggaa tacctacagg
2761 acagggacaa atactatgaa gaggtggcca ttgccagggc aactgaagaa gacttctgtg
2821 aagaggaaga ggttaagatt cgtcagagga tcttcaggcc aacaagaaaa caacgcaagg
2881 aagaaagagc caaccttggc ctcgtcaccg ggtctgagat caggaagagg aatccagatg
2941 acttcaaacc aagaggaaag ctgtgggccg acgatgacag gagcgtcgac tacaatgaaa
3001 gaatcagctt tgaggcccca ccaagcattt ggtctagaat tgtcaacttt ggttctggat
3061 gggggttttg ggtgtcacct agcctcttca taacatcaac acatgtcata cctcaaggca
3121 taactgaagc ctttggtgta cctataaggc aggtgcaaat acacaaatca ggcgaattct
3181 gtcgcctaag attcccaaaa cccatcagga cagatgtatc aggtatgata ctggaggagg
3241 gagcgcctga aggcactgtt gccaccatac tcatcaaaag aaccactgga gaactgatgc
3301 ctctcgcagc aagaatgggc acccacgcga ccatgagaat acaaggacgc acggtgggcg
3361 gccagatggg aatgctgctc actgggtcca atgcaaagag catggatctc ggcaccacgc
3421 ccggtgactg tgggtgtccc tacatttaca aaagaggcaa tgactacata gtcattggag
3481 ttcacacagc agccgctcgt ggcggaaaca ctgtcatctg cgccacacaa ggaagtgagg
3541 gtgaggccac gctcgagggt ggtgacaaca aaggaacata ctgtggggcg ccaatcctag
3601 gccccgggaa tgccccaaag ctgagcacta aaaccaaatt ttggaggtct tccacaacac
3661 cactcccacc cggcacatac gagccggcat atctgggagg aaaagacccc cgagtcaaag
3721 gtggaccatc tctgcaacaa gttatgcgag accaactgaa gccatttacc gaaccccgtg
3781 gtaagccacc aaaaccaagt gttcttgaag ctgctaaaaa gacaattatc aatgtgctag
3841 agcaaacaat agacccccca caaaagtgga cgtacgctca agcgtgcgcg tctctcgaca
3901 aaaccacatc tagtgggtac ccccaccacg tgcgcaaaaa tgagcactgg aatggggaat
3961 ctttcacagg aaaattggct gaccaggcat caaaagcaaa cctaatgttt gaagagggga
4021 agcacatgac cccagtttac acagctgccc ttaaggatga gttggtcaaa accgagaaag
4081 tatacggaaa gataaagaag aggttgcttt ggggctctga ccttgccacc atggtacggt
4141 gcgcgcgctc ctttggcggt ttgatggacg aactcaaggc ccattgtgtg acacttccga
4201 taagggttgg catgaacatg aatgaagatg gaccaatagt ctttgagaaa cattccagat
4261 acaggtatca ctatgatgca gattattcca ggtgggattc aacacagcag agagccgtcc
4321 tggccgcggc catggagatt atggttaaat tctcagcaga accacaacta gcccaaatag
4381 ttgcagagga tctattgtcg cctagtgtag ttgacgtggg cgacttcaaa atttccatca
4441 atgaaggatt accatcgggt gtcccttgca cctctcaatg gaattcaatt gcacactggc
4501 tcctcacctt atgtgccctt tctgaagtta cagacctctc tcctgacatc gtgcaggcca
4561 actccctctt ctccttctat ggtgatgatg aaattgtgag cacagatatt aaattagacc
4621 cagaaaagct gacggggaag ttgagagaat atggcctcaa acccacccgt ccagacaaaa
4681 ctgagggccc cctgatcatt agcgaggatc tgaatggcct gactttcctg aggagagccg
4741 tcactcgcga ccctgcagga tggtttggca aactggacca aagttctata cttaggcaat
4801 tgtattggac caaaggcccc aatcatgaag acccctttga gtcaatgatt ccacactccc
4861 agagacccat acaactcatg tcactcttgg gcgaagcagc actgcatgaa ccatcatttt
4921 acagcaagat cagcaagctt gtgatatctg aactgaaaga aggtggaatg gatttttacg
4981 tgcccaggca agaacctatg tttaggtgga tgaggttctc agatttgagc acgtgggagg
5041 gcgatcgcaa tcttgctccc agtcttgtga atgaagatgg cgtcgaatga cgccgctcca
5101 tctactgatg gtgcagccgg cctcgtgcca gaaagtaata atgaggtcat ggctcttgaa
5161 cccgtggctg gtgccgcctt ggcagccccg gtcaccggtc aaacaaatat tatagaccct
5221 tggattagag caaattttgt ccaggccccc aatggtgaat ttacagtctc tccccgtaat
5281 gcccctggtg aagtgctatt gaatctagag ttgggtccag aattaaatcc ttatctggca
5341 catttagcaa gaatgtacaa cgggtatgcc ggtgggatgg aggtgcaggt catgttggct
5401 gggaacgcgt tcacagccgg caagttggtc ttcgccgctg tgccacctca cttcccgatt
5461 gaaaacctta gcccacagca aattaccatg tttcctcatg tgattataga tgtaaggact
5521 ttggaacccg ttttattacc actccctgat gttagaaata atttcttcca ctataatcag
5581 aaagatgatc ccaagatgag aatcgtggct atgctttaca ccccccttag gtctaatggt
5641 tcaggtgatg acgtattcac agtctcctgc agggtgttga ctagaccctc ccctgatttt
5701 gatttcacat acctggtgcc accaacagtg gagtctaaaa caaaaccatt caccctccca
5761 attctcacac ttggggaact ttccaattct agattcccag tgtccataga ccagatgtac
5821 accagcccca atgaagtcat atcagtgcag tgtcaaaatg gtaggtgcac actggatggg
5881 gagctccaag gaacgaccca actccaggtc agtggcattt gtgcttttaa gggagaagta
5941 actgcccact tgcatgacaa tgatcaccta tacaacatca ccatcacaaa cttgaatggg
6001 tccccttttg atccctccga ggacatccct gcccccctgg gcgtacctga ctttcaggga
6061 agagtctttg gtatcatctc ccaaagagac aagcacaatt cccctggaca taatgaacca
6121 gcaaatagag gacacgacgc tgtggtccct acctacacag cacagtacac tccaaaattg
6181 ggtcagattc aaattggcac atggcagacc gacgatctca cagtcagcca accagtaaaa
6241 ttcaccccag ttggactcaa tgatactgaa cattttaacc aatgggtggt tcctagatat
6301 gctggtgctc taaatcttaa tacaaatctt gccccttctg ttgctccagt atttccaggg
6361 gagcgcctac tctttttcag atcatatatc cccctcaagg gtggttatgg aaatccagcc
6421 attgattgcc tactaccaca agagtgggtg caacatttct accaggaagc agccccttca
6481 atgagtgagg tggcccttgt cagatacatc aacccggata ctggtcgggc actgttcgag
6541 gccaagctcc acagagctgg tttcatgaca gtttcaagca acaccagtgc cccggtggtt
6601 gtgcctgcca acggatactt tagatttgat tcttgggtga accaattcta ttctctcgcc
6661 cccatgggaa ctgggaatgg gcgtagaagg gttcaataat ggctggagct ttcgtagctg
6721 gtcttgcagg ggatgtgctc agcaatgggc tcagttcatt aattaatgca ggtgctaatg
6781 caataagtca gagggcagaa tttgatttta atcagagatt acagcaaaat tctttcaatc
6841 atgacaagga gatgttgcag gctcagattc aggcaactaa gcagctgcag gcagacatga
6901 tggccataaa gcagggggtc ttgaccgctg gcggcttttc ccctgctgac gcagccagag
6961 gtgctgtgaa tgcgcccatg acacaggcgc tggattggaa tggcacaagg tattgggcac
7021 caggctccat gaggaccaca tcttactccg gaagattcac atcaaccgcc ccagtaaggc
7081 aggccgattt ccaacacacc caaagccggc cttcgagtgg ctcttctgtg tcttccttta
7141 ctactcagtc ttcaaggcca attctgacaa caaccactgg atcctcacat ggcacagcct
7201 tatcaaattc gactcgcagc acaaacctct cccaatcaac ggtctctagg gctgcatcta
7261 gaactggtga gtgggttagg gatcaaaata gaaatttgga accctatatg catggtgccc
7321 tacagacagc ttttgtcacc ccgccttcca gcagggcgtc tgacgggacg gtctcaaccg
7381 tcccaaaagg tgttttggac tcctggacac ctgcgttcaa cacccgcagg cagccgcttt
7441 ttgcacacct ccgtaagagg ggggagtcac aagcttagtg aaaaggtgaa aatttatcta
7501 aaatgaattg atcttacctt tt
//