Typing tool
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Typing tool
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Complete norovirus genomes
| LC209472 | GII.2 | |
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| GII.P2 |
ORF1: 1..5092
ORF2: 5073..6701
ORF3: 6701..7480
LOCUS LC209472 7524 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2010/GII.P2_GII.2/Hiroshima-18 RNA, nearly
complete genome.
ACCESSION LC209472
VERSION LC209472.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2010/GII.P2_GII.2/Hiroshima-18
ORGANISM Norovirus Hu/GII/JP/2010/GII.P2_GII.2/Hiroshima-18
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7524)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7524
/organism="Norovirus
Hu/GII/JP/2010/GII.P2_GII.2/Hiroshima-18"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2010/GII.P2_GII.2/Hiroshima-18"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934298"
/country="Japan: Hiroshima"
/collection_date="2010"
/note="genotype: GII.P2_GII.2"
gene <1..5092
/gene="POL"
CDS <1..5092
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BBB87034.1"
/translation="ASNDASAAAAANSNNDNAKSSSDGMLNNMAVTLKRALGARPKQP
APREKPPRPPRPPTPELIKRIPPPPPNDGDEPTVMFSTVGGVSGLPELTTVGQPPEAN
TAFSVPPLSLRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISVAK
VELTPLSLYWRPVYTPQYLIPPDTLRKLHGELFPYTAFENNCYAFCCWVLDLNDSWLS
RRMISRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDIIGKLKP
LNILNILASCDWTFAGIVESLILLAELFDVFWTPPDVSAMIAPLLGDYELQGPEDIAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKD
EANELAMVRAIEDAVLDLEAIENNHMTTLLKDKNSLAAYMKTLDMEEEKARKLSTKSA
SPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGKPGIGKTHLARELAKK
IASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLVNPAPLDYVNFEACSRRIDFLVYADAPEVEKAKR
DFPGQPDMWKDAYRSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTASSLVARASGL
LHERLDEYELQGPSLSTFNFDRNKIAAFRQLAAENKYGLVDTMRVGNQLRNVTTMDEL
KKAIKNITIRKCQIVYGGNTYTLESDGKGKVVVERVQSVSVQINNEIAGAVHHLRCAR
IRYYVKCVQEAIYSLLQIAGTVFVTSRIVSRMNIQNLWSRPLTEDADEATMKEGCPKP
REEEEFVVSSDDIKPEGKKGKNKSGRGKKHTAFSSKGLSDEEYEEYKRIREERNGKYS
IEEYLQDRDKYYEEVAIARATEEDFCEEEEVKIRQRIFRPTRKQRKEERANLGLVTGS
EIRKRNPDDFKPRGKLWADDDRSVDYNERISFEAPPSIWSRIVNFGSGWGFWVSPSLF
ITSTHVIPQGITEAFGVPIRQVQIHKSGEFCRLRFPKPIRTDVSGMILEEGAPEGTVA
TILIKRTTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGN
APKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPKPSVLEAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGYPHHVRKNEHWNGE
SFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKVYGKIKKRLLWGSDLATM
VRCARSFGGLMDELKAHCVTLPIRVGMNMNEDGPIVFEKHSRYRYHYDADYSRWDSTQ
QRAVLAAAMEIMVKFSAEPQLAQIVAEDLLSPSVVDVGDFKISINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTDLSPDIVQANSLFSFYGDDEIVSTDIKLDPEKLTGKLREYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQLYWTKGPNHE
DPFESMIPHSQRPIQLMSLLGEAALHEPSFYSKISKLVISELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPSLVNEDGVE"
gene 5073..6701
/gene="VP1"
CDS 5073..6701
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB87035.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPIENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNITITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVSQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6701..7480
/gene="VP2"
CDS 6701..7480
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB87036.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGRFTSTAPVRQADFQHTQSRPSSGSSVSSFTTQSSRPTLTTTT
GSSHGTASSNSTRSTNFSQSTVSRAASRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 ggcgtctaac gacgcttctg ctgccgctgc tgcaaacagc aacaacgaca acgcaaaatc
61 ttcaagtgac ggaatgctta acaacatggc cgtcactctt aaacgagccc tcggggcccg
121 gcccaaacag ccggccccaa gggaaaaacc cccaagaccc cctagaccac caacaccaga
181 actaatcaaa agaatccccc ccccaccacc caatgatggg gacgaaccaa ccgtgatgtt
241 tagcactgta ggtggtgtgt ctggcctacc tgagctcaca acagtcggcc aaccacctga
301 agctaacacg gcctttagtg tgcctcccct cagtctaagg gaaaacaggg acgctaagga
361 gccgttgact ggaactattc tggaaatgtg ggatggggaa atttatcatt atggactgta
421 tgtggaaaga gggcttgtgt taggcgtgca caagccgcca gctgccatca gcgtagccaa
481 agtggaactg acgcccctct cactgtactg gagacctgtg tacacgcctc agtaccttat
541 acctcctgac accttgagga aactccatgg tgaattgttt ccctatacag cctttgaaaa
601 caactgttat gccttctgct gttgggtttt ggaccttaac gactcatggt taagcaggag
661 gatgattagt aggaccactg gctttttcag gccctaccaa gagtggaaca ggaagcccct
721 tccaactatg gatgactcaa aattgaagaa ggtcgcaaac atcgttctgt gtgcattgtc
781 atcattgttc actaggccca tcaaggatat aattggcaaa cttaaacccc tcaacatcct
841 aaacattctg gcctcatgcg actggacctt cgctggcata gtagagtcac taatcctctt
901 ggctgaactc tttgatgtat tctggacacc cccagatgtg tctgcaatga tcgcacccct
961 cctcggtgac tacgagctac aaggccccga agacatcgct gtggagctcg tgcccgttgt
1021 gatgggtggg ataggtctgg tgttgggatt caccaaagag aaaataggca agatgctctc
1081 ctctgcagca tcaactctga gggcatgcaa agatcttgga gcctacggat tggagatcct
1141 aaaactagtc atgaaatggt ttttcccaaa gaaggatgag gccaacgaac tggctatggt
1201 tagagccatt gaagacgctg tattagacct ggaggccatt gaaaacaacc atatgaccac
1261 tctgttgaaa gacaagaaca gccttgcagc ctacatgaag accttagata tggaagagga
1321 aaaagctagg aagttatcca ccaaatcagc ctcccctgac attgtgggca ccataaacgc
1381 cctgctggct aggatcgctg ccgcgcgttc tttagttcat agggccaagg aggagctctc
1441 cagcagacca agaccggtcg ttttgatgat ctctggcaaa ccagggatag gaaagaccca
1501 cttggccagg gaactggcaa agaaaattgc ctcgacactc acaggagacc aaagggtggg
1561 cctcattcca cggaatggag tcgaccactg ggatgcctac aagggtgaga gagtggtgct
1621 ctgggatgat tacgggatga gcaaccccat ccacgatgcg ctgaggttgc aggaactggc
1681 ggatacatgt ccattaactc tgaattgtga caggattgaa aacaaaggga aggtttttga
1741 tagcgacgcg atcataatca ccaccaattt ggtcaatcct gcgccgctgg attatgtcaa
1801 ctttgaggcc tgctccaggc gtatagactt ccttgtgtat gctgatgccc cagaagtcga
1861 gaaagcaaag cgggacttcc ctggtcaacc ggacatgtgg aaggacgcct atcgttctga
1921 cttctcacac attaaactac aacttgcacc acaaggtggg tttgacaaaa atggtaacac
1981 cccacatggt aaaggagtga tgaagactct cactgccagt tcactggttg cgcgtgcctc
2041 tggtctcttg cacgaaagat tggatgagta cgagttacag ggtccgtccc tctcaacctt
2101 caactttgac cgcaacaaaa ttgcagcgtt tagacaactc gccgctgaaa ataagtatgg
2161 tctggtggac acgatgaggg tgggcaacca gctcagaaat gttacgacca tggatgaact
2221 caagaaggcc atcaagaaca tcacaatcag aaagtgccag atagtctatg gtggcaacac
2281 ttacacgctt gagtctgacg gcaagggtaa ggttgtagtt gagagggtgc agagcgtcag
2341 cgtgcaaatc aacaatgaga tcgctggtgc agtgcaccac cttagatgtg ccaggataag
2401 gtattatgtc aagtgtgttc aagaggccat ctactcactt ctccaaatcg ccggcacggt
2461 gtttgtcact tcacgcatcg taagccgcat gaacatccaa aatttatggt ccaggccatt
2521 aactgaagat gcagatgagg ccactatgaa agaggggtgt cccaaaccta gggaagaaga
2581 ggaatttgtc gtctcctcag atgacatcaa gccagagggc aagaaaggta aaaacaagag
2641 tggccggggc aagaaacaca cggcattctc aagcaaaggt cttagtgatg aggagtacga
2701 agagtacaaa aggatcagag aggagagaaa tggtaagtac tccatagagg aatacctaca
2761 ggacagggac aaatactatg aagaggtggc cattgccagg gcaactgaag aagacttctg
2821 tgaagaggaa gaggttaaga ttcgtcagag gatcttcagg ccaacaagaa aacaacgcaa
2881 ggaagaaaga gccaaccttg gcctcgtcac cgggtctgag atcaggaaga ggaatccaga
2941 tgacttcaaa ccaagaggaa agctgtgggc cgacgatgac aggagcgtcg actacaatga
3001 aagaatcagc tttgaggccc caccaagcat ttggtctaga attgtcaact ttggttctgg
3061 atgggggttt tgggtgtcac ctagcctctt cataacatca acacatgtca tacctcaagg
3121 cataactgaa gcctttggtg tacctataag gcaggtgcaa atacacaaat caggcgaatt
3181 ctgtcgccta agattcccaa aacccatcag gacagatgta tcaggtatga tactggagga
3241 gggagcgcct gaaggcactg ttgccaccat actcatcaaa agaaccactg gagaactgat
3301 gcctctcgca gcaagaatgg gcacccacgc gaccatgaga atacaaggac gcacggtggg
3361 cggccagatg ggaatgctgc tcactgggtc caatgcaaag agcatggatc tcggcaccac
3421 gcccggtgac tgtgggtgtc cctacattta caaaagaggc aatgactaca tagtcattgg
3481 agttcacaca gcagccgctc gtggcggaaa cactgtcatc tgcgccacac aaggaagtga
3541 gggtgaggcc acgctcgagg gtggtgacaa caaaggaaca tactgtgggg cgccaatcct
3601 aggccccggg aatgccccaa agctgagcac taaaaccaaa ttttggaggt cttccacaac
3661 accactccca cccggcacat acgagccggc atatctggga ggaaaagacc cccgagtcaa
3721 aggtggacca tctctgcaac aagttatgcg agaccaactg aagccattta ccgaaccccg
3781 tggtaagcca ccaaaaccaa gtgttcttga agctgctaaa aagacaatta tcaatgtgct
3841 agagcaaaca atagaccccc cacaaaagtg gacatacgct caagcgtgcg cgtctctcga
3901 caaaaccaca tctagtgggt acccccacca cgtgcgcaaa aacgagcact ggaatgggga
3961 atctttcaca ggaaaattgg ctgaccaggc atcaaaagca aacctaatgt ttgaagaggg
4021 gaagcacatg accccagttt acacagctgc ccttaaggat gagttggtca aaaccgagaa
4081 agtatacgga aagataaaga agaggttgct ttggggctct gaccttgcca ccatggtacg
4141 gtgcgcgcgc tcctttggcg gtttgatgga cgaactcaag gcccattgtg tgacacttcc
4201 gataagggtt ggcatgaaca tgaatgaaga tggaccaata gtctttgaga aacattccag
4261 atacaggtat cactatgatg cagattattc caggtgggat tcaacacagc agagagccgt
4321 cctggccgcg gccatggaga ttatggttaa attctcagca gaaccacaac tagcccaaat
4381 agttgcagag gatctattgt cgcctagtgt agttgacgtg ggcgacttca aaatttccat
4441 caatgaagga ttaccatcgg gtgtcccttg cacctctcaa tggaattcaa ttgcacactg
4501 gctcctcacc ttatgtgccc tttctgaagt tacagacctc tctcctgaca ttgtgcaggc
4561 caactccctc ttctccttct atggtgatga tgaaattgtg agcacagata ttaaattaga
4621 cccagaaaag ctgacgggga agttgagaga atatggcctc aaacccaccc gtccagacaa
4681 aactgagggc cccctgatca ttagcgagga tctgaatggc ctgactttcc tgaggagaac
4741 cgtcactcgc gaccctgcag gatggtttgg caaactggac caaagttcta tacttaggca
4801 attgtattgg accaaaggcc ccaatcatga agaccccttt gagtcaatga ttccacactc
4861 ccagagaccc atacaactca tgtcactctt gggcgaagca gcactgcatg aaccatcatt
4921 ttacagcaag atcagcaagc ttgtgatatc tgaactgaaa gaaggtggaa tggattttta
4981 cgtgcccagg caagaaccta tgtttaggtg gatgaggttc tcagatttga gcacgtggga
5041 gggcgatcgc aatcttgctc ccagtcttgt gaatgaagat ggcgtcgaat gacgccgctc
5101 catctactga tggtgcagcc ggcctcgtgc cagaaagtaa taatgaggtc atggctcttg
5161 aacccgtggc tggtgccgcc ttggcagccc cggtcaccgg tcaaacaaat attatagacc
5221 cttggattag agcaaatttt gtccaggccc ccaatggtga atttacagtc tctccccgta
5281 atgcccctgg tgaagtgcta ttgaatctag agttgggtcc agaattaaat ccttatctgg
5341 cacatttagc aagaatgtac aacgggtatg ccggtgggat ggaggtgcag gtcatgttgg
5401 ctgggaacgc gttcacagcc ggcaagttgg tcttcgccgc tgtgccacct cacttcccga
5461 ttgaaaacct tagcccacag caaattacca tgtttcctca tgtgattata gatgtaagga
5521 ctttggaacc cgttttatta ccactccctg atgttagaaa taatttcttc cactataatc
5581 agaaagatga tcccaagatg agaatcgtgg ctatgcttta cacccccctt aggtctaatg
5641 gttcaggtga tgacgtattc acagtctcct gcagggtgtt gactagaccc tcccctgatt
5701 ttgatttcac atacctggtg ccaccaacag tggagtctaa aacaaaacca ttcaccctcc
5761 caattctcac acttggggaa ctttccaatt ctagattccc agtgtccata gaccagatgt
5821 acaccagccc caatgaagtc atatcagtgc agtgtcaaaa tggtaggtgc acactggatg
5881 gggagctcca aggaacgacc caactccagg tcagtggcat ttgtgctttt aagggagaag
5941 taactgccca cttgcatgac aatgatcacc tatacaacat caccatcaca aacttgaatg
6001 ggtccccttt tgatccctcc gaggacatcc ctgcccccct gggcgtacct gactttcagg
6061 gaagagtctt tggtatcatc tcccaaagag acaagcacaa ttcccctgga cataatgaac
6121 cagcaaatag aggacacgat gctgtggtcc ctacctacac agcacagtac actccaaaat
6181 tgggtcagat tcaaattggc acatggcaga ccgacgatct cacagtcagc caaccagtaa
6241 aattcacccc agttggactc aatgatactg aacattttaa ccaatgggtg gttcctagat
6301 atgctggtgc tctaaatctt aatacaaatc ttgccccttc tgttgctcca gtatttccag
6361 gggagcgcct actctttttc agatcatata tccccctcaa gggtggttat ggaaatccag
6421 ccattgattg cctactacca caagagtggg tgcaacattt ctaccaggaa gcagcccctt
6481 caatgagtga ggtggccctt gtcagataca tcaacccgga tactggtcgg gcactgttcg
6541 aggccaagct ccacagagct ggtttcatga cagtttcaag caacaccagt gccccggtgg
6601 ttgtgcctgc caacggatac tttagatttg attcttgggt gaaccaattc tattctctcg
6661 cccccatggg aactgggaat gggcgtagaa gggttcaata atggctggag ctttcgtagc
6721 tggtcttgca ggggacgtgc tcagcaatgg gctcagttca ttaattaatg caggtgctaa
6781 tgcaataaat cagagggcag aatttgattt taatcagaga ttacagcaaa attctttcaa
6841 tcatgacaag gagatgttgc aggctcagat tcaggcaact aagcagctgc aggcagacat
6901 gatggctata aagcaggggg tcttgaccgc tggcggcttt tcccctgctg acgcagccag
6961 aggtgctgtg aatgcgccca tgacacaggc gctggactgg aatggcacaa ggtattgggc
7021 accaggctcc atgagaacca catcttactc cggaagattc acatcaaccg ccccagtaag
7081 gcaggccgat ttccaacaca cccaaagccg gccttcgagt ggctcttctg tgtcttcctt
7141 tactactcag tcttcaaggc caactctgac aacaaccact ggatcctcac atggcacagc
7201 ctcatcaaat tcgactcgca gcacaaactt ctcccaatca acggtctcta gggctgcatc
7261 tagaactggt gagtgggtta gggatcaaaa tagaaatttg gaaccctata tgcatggtgc
7321 cctacagaca gcttttgtca ccccgccttc cagcagggcg tctgacggga cggtctcaac
7381 cgtcccaaaa ggtgttttgg actcctggac acctgcgttc aacacccgca ggcagccgct
7441 ttttgcacac ctccgtaaga ggggggagtc acaagcttag tgaaaaggtg aaaatttatc
7501 taaaatgaat tgatcttacc tttt
//