Typing tool
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Typing tool
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Complete norovirus genomes
| LC209470 | GII.2 | |
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| GII.P16 |
ORF1: 1..5092
ORF2: 5073..6701
ORF3: 6701..7480
LOCUS LC209470 7515 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2014/GII.P16_GII.2/Hiroshima-30 RNA, nearly
complete genome.
ACCESSION LC209470
VERSION LC209470.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2014/GII.P16_GII.2/Hiroshima-30
ORGANISM Norovirus Hu/GII/JP/2014/GII.P16_GII.2/Hiroshima-30
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7515)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7515
/organism="Norovirus
Hu/GII/JP/2014/GII.P16_GII.2/Hiroshima-30"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2014/GII.P16_GII.2/Hiroshima-30"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934296"
/country="Japan: Hiroshima"
/collection_date="2014"
/note="genotype: GII.P16_GII.2"
gene <1..5092
/gene="POL"
CDS <1..5092
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BBB87028.1"
/translation="KMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPK
QPAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEPVIRFEVKSGISGLPDLTTVPQPDA
TNTAFSVPPLSLRENREAKEPLTGAIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
AKVELAPLSLYWRVVYTPQYLISPDTLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIGKI
KPLNILNILATCDWTFAGIVESLILFAELFGVYWTPPDVSAMIAPLLGEYELQGPEDI
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARKLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
KKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEKA
KRDFPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTITTFNFDRNRVTAFRQLAAENKYGLVDTMRIGNQLKGVKTME
ELKQAIKNVSIKRCQIIYHGSTFDLESDGKGKVTVEKVKNTTVQTNNELAGALHHLRS
ARIRYYVKCVQEAIYSILQIAGAAFVTTRIARRMNIQELWSKPPLDQSESEVKEETPK
LEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPTGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNGE
TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTM
VRCARAFGGLMDEMKAHCISLPIRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQW
NSISHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLREYG
LKPTRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPNHE
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5073..6701
/gene="VP1"
CDS 5073..6701
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB87029.1"
/translation="MKMASNDAAPSTDGAAGLVPESNSEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
VISQRDKHNTPGHNEPANRAHDAVVPTYTAQYTPKLGQIQIGTWQTDDLAVNQPVKFT
PVGLNDTDHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGTPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
gene 6701..7480
/gene="VP2"
CDS 6701..7480
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB87030.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQVQATKQLQADMMAIKQGVLAAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTAYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSYGTASSNSTRSTNLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gaagatggcg tctaacgacg ctaccgttgc cgttgcttgc aacaacaaca acgacaagga
61 aaaatcttcg ggtgaaggct tatttacaaa tatgtcttcc accctaaaga aagccctcgg
121 ggctcggcct aaacagcctg ccccgaggga caactcacaa aaacccccga gaccaccaac
181 gcccgagttg gttaaaagga taccccctcc cccacctaat ggcgaagaag agccagtcat
241 taggtttgag gtcaagagtg gaatttctgg cctgcccgat ctcacgacag ttccccaacc
301 agatgcgacc aatacggcat tcagtgttcc accgttgagc ttaagagaaa acagggaggc
361 taaggaaccg ctaactgggg caataataga gatgtgggat ggagagatat accactatgg
421 tttgtatgtg gagaaaggcc tagtcttggg tgtgcacaaa ccacccgcag ctataagcat
481 ggcaaaggtg gaattagcac cgctgtcgtt atactggcgt gtggtgtaca ctccccaata
541 cctcatctcc cctgacactc tcaagaggct caacggagag gcattccctt acaccgcctt
601 tgataataac tgttatgcct tttgctgctg ggtgttagac cttaatgact catggctcag
661 cagaagaatg gtgcagagga cgacaggctt cttcagaccc taccaagagt ggaacagaaa
721 gcccctaccc accatggatg attccaaaat taagaaggtg gcaaacatat tcctatgctc
781 attatctaca ctgttcacta ggcctataaa agacatcata gggaaaatca aaccactgaa
841 tattttaaac attctggcaa cgtgtgattg gacgttcgcc ggaatcgtag agtccctaat
901 attatttgct gaactctttg gagtttactg gacaccccca gatgtgtctg ctatgatcgc
961 tcccttactt ggcgaatacg agttgcaggg accagaagac atcgccgttg agctcgtacc
1021 tgtagtgatg ggggggattg gtttggtgct aggattcacc aaagagaaaa ttggcaaaat
1081 gctgtcctca gcagcgtcga cgctcagggc ttgcaaagac cttggtgcct atggtttaga
1141 aatactcaaa ttagtcatga aatggttttt cccaaagaaa gaagaagcca atgaactagc
1201 catggtgaga gcaatagagg atgctgttct ggatcttgag gcgatagaaa acaatcacat
1261 gacaactctg ctgaaagata aagacagcct tgcaacctac atgaaaacac tggacctaga
1321 ggaggagaaa gccagaaaac tgtccacgaa atctgcatct cctgacatag ttgggacaat
1381 caacgccctg ctggctcgaa tagcggcggc tagatcacta gtccacaggg ccaaggagga
1441 gttatctagc agaatcagac cagttgtcgt tatgatatct ggtaagccag ggataggcaa
1501 gacccacttg gccagggagg tggcgaaaaa ggtggcgtcc actctcacag gagatcaaag
1561 agttggactc ataccgagaa acggtgtgga ccattgggat gcatacaaag gtgaaagggt
1621 cgtgttgtgg gatgactatg gcatgagtaa ccctattcat gatgcactgc gcatacagga
1681 attggccgac acatgccccc tcaccttgaa ttgtgacaga attgaaaata agggaaaagt
1741 ttttgatagt gatgttataa taattacaac aaaccttgcc aacccagctc ctcttgatta
1801 tgtcaacttt gaggcctgtt ccaggagaat tgacttcctg gtgtacgccg atgcgccaga
1861 agtggaaaag gcaaaacggg atttccctgg tcaaccagat atgtggaagg acgccttcaa
1921 agcggacttc tcgcacatca agttgcaact tgcgcctcag ggcggctttg acaagaatgg
1981 caacacccca catgggaaag gagtgatgaa gacccttacc accggttctc taatcgcccg
2041 tgcgtcaggt ttgctacatg agaggatgga tgaatttgaa cttcagggcc ccacaatcac
2101 cactttcaac tttgaccgga acagagtcac cgctttcaga caactggctg ctgagaacaa
2161 atatgggctg gtggacacca tgaggattgg caatcaattg aaaggggtga aaaccatgga
2221 agaactcaag caagctatca agaatgtgtc catcaagagg tgccagatta tctaccatgg
2281 atccacgttt gaccttgagt ctgatggcaa gggtaaagtt acagtggaaa aggtcaaaaa
2341 caccactgtt cagaccaaca acgaattggc cggagccctg caccacctca gaagtgctcg
2401 aatcaggtat tatgtcaaat gtgtgcaaga ggcaatctat tccatcctac aaattgccgg
2461 cgccgcgttc gtcaccacac gcattgcacg ccgcatgaat atacaagagc tttggtcaaa
2521 gccaccatta gaccaaagcg agtcagaggt taaggaggag acccccaagt tagaggatga
2581 tgaattcatc atctcctcca aggacattaa ggaggaaggg aagaagggca aaaacaaaac
2641 tggccgtggc aagaaacaca ctgcattctc tagcaagggc ctgagcgatg aggagtatga
2701 cgagtacaag aggataagag aagagagaaa tgggaagtac tctatagagg agtatcttca
2761 agacagggac aggtactatg aagaactcgc catcgccaag gccacggaag aagacttttg
2821 tgaggaggaa gaaataaaaa tccgccagcg gatctttcgt cccactagaa aacaaaggaa
2881 ggaggaaagg gccacgttag ggctagtgac tggttcggaa atcagaaaaa gaaaccctga
2941 tgacttcaaa cctaaaggga aattgtgggc cgacgacaac agaagtgttg actacaatga
3001 aaaactggac tttgaggccc ccccaagcat atggtctagg atcgtaagct ttggttcagg
3061 ttggggcttc tgggtgtcac caagcctgtt tataacatca actcatgtga tccctacggg
3121 tataacagag gcatttgggg tccctatcaa acagattcaa gttcacaaat cgggcgagtt
3181 ttgtcggttc agattcccaa aaccaattag accagatgta acaggaatga tcctggaaga
3241 aggtgcgcca gagggcaccg tagcaaccgt gctcatcaag cgccccactg gagaactcat
3301 gcccctcgca gctagaatgg gaacacacgc aaccatgaaa attcagggcc gcatggttgg
3361 tgggcagatg ggcatgttgc tcactggttc aaatgctaag ggtatggatc tagggacaac
3421 tcccggtgac tgtggctgcc cgtatattta caaaaggggc aatgactaca tagtcattgg
3481 agtgcacaca gcagcagccc gaggtggtaa tactgtcatc tgtgccacac agggaagtga
3541 gggtgaagcg accctcgagg gtggagacga caaaggaaca tactgtgggg cacccatcct
3601 gggccctgga ggggcgccaa agttaagcac aaaaaccaaa ttttggagat catcaaacac
3661 gccccttcca ccagggacat atgagcctgc ctaccttggc ggtcgtgatc cgcgtgtaaa
3721 gggtgggcct tccctacaac aagtcatgag agaccagtta aagcccttca ccgagcctag
3781 gggtaagccc ccgagaccta gtgtgttgga ggcagccaaa cagaccatca tcaacgttct
3841 cgagcaaact ttggatcccc cacaaaaatg gacgtacgca caggcgtgcg cttcacttga
3901 taaaaccacc tctagtgggc acccccatca cgctcgaaag aatgaattct ggaacggtga
3961 gacctttacc ggtaagttgg cagaccaagc atcaaaagca aacttaatgt ttgaggaagg
4021 gaaacatatg acaccagtgt atacagcagc ccttaaggat gagttggtta aaaccgacaa
4081 aatctatggg aagatcaaga aacgcctgct ttggggctct gatttatcca ccatggtccg
4141 atgtgctagg gcctttggtg gactcatgga cgagatgaag gcgcactgca tatcgctccc
4201 aatccgagtt ggcatgaata tgaatgagga tggcccaata atatttgaga agcactccag
4261 atataaatat cactatgatg cagattactc tcgctgggac tcaacacaac agagggctgt
4321 tctagcagcg gccttggaaa taatggtcag attctctgca gaaccgcaac tggcccaaac
4381 agttgctgag gatctgctgg cccccagtgt agtagatgtc ggagacttca aaatttcaat
4441 aaatgaggga ctcccttctg gtgtaccatg cacttcccag tggaattcca tctcacattg
4501 gttactgact ctctgtgctt tgtctgaagt caccaatctg tctcctgaca tcgtgcaggc
4561 aaattctatg ttctcatttt acggtgatga cgagatcgtc agcaccgata taaaattgga
4621 ccctgaaaag ttgaccacca aattgaggga gtatggtcta aagccaactc gcccagacaa
4681 aaccgagggg cccctgatca tcagtgagga tttggacggt ctcaccttcc ttcggaggac
4741 ggtttctcgt gacccagctg gttggtttgg aaagttagat caaagctcaa tactaagaca
4801 gatgtattgg accagaggac caaaccatga agaccccaat gagacaatga taccccactc
4861 tcaaagaccc atacagctca tggcactgct tggtgaggcc tcccttcacg gaccctcttt
4921 ctacagcaag attagtaaat tggtcataac tgaactcaaa gaaggtggga tggactttta
4981 cgtgccaaga caggagccca tgttcagatg gatgaggttt tctgacttga gcacgtggga
5041 gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgaat gacgccgctc
5101 catctactga tggtgcagcc ggcctcgtgc cagaaagtaa tagtgaggtc atggctcttg
5161 aacccgtggc tggcgccgcc ttggcagccc cagtcaccgg tcaaacaaat ataatagacc
5221 cttggattag agcaaatttt gtccaggccc ccaatggtga atttacagtc tctccccgta
5281 actcccctgg tgaagtgcta ttgaatctag agttgggtcc agaattaaat ccttatctgg
5341 cacatttagc aagaatgtac aatgggtatg ccggtgggat ggaggtgcag gtcatgttgg
5401 ctgggaatgc gttcacagcc ggcaagttag tcttcgccgc tgtgccaccc cacttcccgg
5461 ttgaaaacct tagcccacag caaattacca tgttccctca tgtgattata gatgtcagga
5521 ctttggaacc tgttttatta ccactccctg atgttaggaa taacttcttc cattataatc
5581 agaaagatga tcccaagatg agaattgtgg ctatgcttta cacccccctt aggtctaatg
5641 gttcaggcga tgatgtgttt acagtctcct gcagggtgtt gactagaccc tcccctgatt
5701 ttgatttcac atatctggtg ccaccaacag tggaatctaa aacaaaacca ttcactctcc
5761 caatcctcac gcttggggaa ctttccaatt ctagattccc agtgtccata gaccagatgt
5821 acaccagccc caatgaagtc atatcagtgc agtgtcaaaa tggcaggtgc acactggatg
5881 gggaactcca aggaacaaca caactccaag tcagtggcat ttgtgctttc aagggagaag
5941 tgactgccca cttgcatgac aatgaccacc tgtataatgt caccatcaca aatttgaatg
6001 ggtccccttt tgacccctcc gaggacatcc ccgcccctct gggcgtacct gactttcagg
6061 gaagggtctt tggtgtcatc tcccaaagag acaaacacaa cacccctgga cacaatgaac
6121 cagcaaacag ggcacacgat gccgtggtcc ctacttatac agcacagtat accccaaaat
6181 tgggtcagat tcaaattggc acatggcaga ctgacgatct cgcagtcaac caaccagtca
6241 aattcacccc agttggactt aatgacactg accattttaa ccaatgggtg gtccccaggt
6301 atgctggtgc cctaaacctt aacacaaacc tcgccccttc tgttgctcca gtatttccag
6361 gggagcgtct gctctttttc agatcataca tccccctcaa gggcggttat ggaactccag
6421 ccatcgattg cctactgcca caagagtggg tgcaacattt ctatcaggaa gcagcccctt
6481 cgatgagtga ggtggccctt gtcagataca tcaacccgga cactggtcgg gcactgtttg
6541 aggccaaact ccacagagct ggtttcatga cagtctcgag caacaccagt gccccggtgg
6601 ttgtgcctgc caacggatac ttcaggtttg attcttgggt gaaccaattc tattctctcg
6661 cccccatggg aactggaaat gggcgcagaa ggattcaata atggctggag cttttgtagc
6721 tggtcttgca ggggacgtgc tcagcaatgg gctcagttca ttaattaatg caggtgctaa
6781 tgcaataaat cagagggcag aatttgattt taatcagaga ttacagcaaa actctttcaa
6841 tcatgataag gagatgttgc aggcccaggt ccaggcaact aagcagctgc aggcagacat
6901 gatggctata aaacaggggg tcctggccgc tggcggcttt tcccctgctg atgcagccag
6961 aggtgctgtg aacgcgccca tgacacaggc gctggattgg aacggcacaa ggtattgggc
7021 accaggctcc atgaggacta cagcctactc tgggaaattc acatcaaccg ccccagtgag
7081 gcaggctgat tttcagcaca cccaaagccg gccctcgagt ggttcttctg tgtcctcctt
7141 tgctactcag tcttcaaggc cgaccctgac tacaaccact gggtcctcat atggcacagc
7201 ctcatcaaat tcgactcgca gcacaaacct ttcccaatca acggtctcca gggctacatc
7261 taggactggt gaatgggtta gagaccaaaa cagaaatttg gaaccttaca tgcatggtgc
7321 cttacagacg gcctttgtca ccccgccttc cagcagggcg tctgatggga cggtctcaac
7381 cgttccaaaa ggtgttttgg actcctggac acctgcgttt aacacccgca ggcagccgct
7441 tttcgcacac ctccgtaaga ggggggagtc acaagcttag tgaaaaggtg aaaatttatt
7501 taaaatgaat tgatt
//