Typing tool
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Typing tool
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Complete norovirus genomes
| LC209467 | GII.2 | |
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| GII.P16 |
ORF1: 5..5101
ORF2: 5082..6710
ORF3: 6710..7489
LOCUS LC209467 7523 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Hokkaido-17 RNA, complete
genome.
ACCESSION LC209467
VERSION LC209467.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Hokkaido-17
ORGANISM Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Hokkaido-17
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7523)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7523
/organism="Norovirus
Hu/GII/JP/2011/GII.P16_GII.2/Hokkaido-17"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2011/GII.P16_GII.2/Hokkaido-17"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934293"
/country="Japan: Hokkaido"
/collection_date="2011"
/note="genotype: GII.P16_GII.2"
gene 5..5101
/gene="POL"
CDS 5..5101
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BBB87019.1"
/translation="MKMASNDANVAVAYNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQSAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLEDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKT
MEELKQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHL
KHARIRYYVRCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEA
PKSEDDEFIISSKDIKEEGKKGKNKTGRGRKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLRPFTEPR
GKPPRPSVLEAAKQTIINVLEQALDPPQKWTYAQACASLDKTTSSGYPHHVRKNEFWN
GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN
HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5082..6710
/gene="VP1"
CDS 5082..6710
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB87020.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLSLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDVPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYVPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6710..7489
/gene="VP2"
CDS 6710..7489
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB87021.1"
/translation="MAGAFMAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGKFTSIAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTGLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESHA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctaa cgttgccgtt gcttacaaca acaacaacga
61 caaggaaaaa tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc
121 cctcggggcc cggcccaaac agtccgcccc gagggacaac tcacaaaaac ccccaagacc
181 accaactccc gagttggtta agaggatacc ccctccccca cctaatggtg aagaagaaga
241 gccagtcatt aggtatgagg ttaagagtgg gatctctggc ctgcccgagc tcacaacagt
301 cccccaaccg gatgtggcca acacggcatt cagtgtccca ccgctgagct tgagagaaaa
361 cagggaggcc aaggaaccgc tgacaggggc aatattagag atgtgggatg gagagatata
421 ccactatggc ctgtacgtgg agaaaggctt agtgttgggt gtgcacaaac cacctgcagc
481 tataagcatg gcaaaagtgg agctgacgcc gttgtcattg tactggcgtg tggtctacac
541 cccccaatac ctcatctccc ctgaaactct caggaggctc aacggagagg cattccctta
601 caccgccttt gacaacaatt gctatgcctt ttgctgctgg gtattagacc tcaatgactc
661 atggcttaat aggaggatgg tacaaaggac aacaggcttc ttcagacctt accaagagtg
721 gaacagaaaa cccctgccta ctatggatga ctccaaaatc aagaaggtgg caaacatatt
781 cctgtgttca ttgtccacgt tgttcaccag acctataaaa gacctcatag gaaaaattaa
841 accattaaac atcttgaaca tcctggcaac gtgtgactgg acattcgccg gaatagtgga
901 gtctctgata ttacttgctg aactctttgg agttttctgg acacccccag atgtgtctgc
961 tatgatcgct cccttacttg aagactacga gttgcaaggg ccagaagacc tcgccgttga
1021 gctcgtacct gtggtaatgg gagggattgg tttggtgttg ggattcacca aagagaaaat
1081 tggcaaaatg ttgtcctcag cagcatcaac gctcagggct tgtaaggatc ttggtgccta
1141 tggcttagag atactcaaat tggtcatgaa gtggttcttc ccaaagaaag aagaggccaa
1201 tgagctagcc atggtgagag ctatagagga tgctgtgttg gatcttgagg caatagaaaa
1261 taatcacatg acaactctgt tgaaagacaa agacagccta gcaacctaca tgaaaacact
1321 agacatggaa gaggagaaag ccagaagatt gtccacaaaa tctgcatccc ctgacatagt
1381 tgggacgatc aacgccctgc tggctcgaat agcagcggct aggtcattag tccacagggc
1441 caaggaggag ttatctagca ggataagacc agtagttgtt atgatatctg gcaaaccagg
1501 gataggtaaa actcatttgg ccagggaggt ggcaagaaag gtggcatcca ctctcacagg
1561 ggatcaaaga gtcgggctca taccgagaaa cggtgtggac cactgggatg catacaaagg
1621 tgagagagtc gtgctgtggg acgactatgg catgagcaac cccattcatg atgctttgcg
1681 catacaagaa ttggctgata cgtgtcccct taccttaaat tgcgacagaa ttgaaaataa
1741 gggaaaagtt tttgacagtg aagtcataat aattacaaca aaccttgcca atccagctcc
1801 acttgattat gtcaactttg aggcctgttc caggagaatt gacttcctgg tgtacgccga
1861 ggcaccagaa gtagaaaagg caaaacgaga ctttcctggt caaccagata tgtggaagga
1921 cgccttcaag tcggactttt cacatatcaa gttgcaactt gcacctcagg gcggctttga
1981 caagaatggt aacaccccac atgggaaagg agtgatgaag accctcacca ccggttccct
2041 gattgcccgt gcatcaggct tactgcatga gaggatggat gaatttgaac tccaaggccc
2101 cacagttacc accttcaatt tcgaccggaa cagaatcacc gcattcagac aattggccgc
2161 agaaaacaag tatgggttgg tggacaccat gagagttggc aatcaattaa aaggggtgaa
2221 aaccatggaa gaactcaaac aagcaatcaa gaatgtgatc atcaagaggt gccggatcat
2281 ctacggtggc tccacgtatg accttgaatc tgatggcaag ggcaaagttt tggtggaaaa
2341 ggtcaagaac acctctatac agaccaacaa cgagttggct ggagccctgc atcacctcaa
2401 acatgcccga atcaggtatt atgtcagatg tgtgcaagaa gcagtttact ctatcataca
2461 gattgccggc gctgcgtttg tcaccacacg cattgcacgc cgcatgaaca tacaagagct
2521 ttggtcgaag ccaccattag accaaaatga atcagaggct aaggaagagg cccccaagtc
2581 agaagatgac gagttcatca tatcttctaa ggacatcaag gaggaaggaa agaagggcaa
2641 aaacaaaact ggccgtggca ggaaacacac tgcattctct agcaagggct tgagcgatga
2701 ggagtatgac gagtacaaga ggataagaga agagagaaat gggaagtact ctatagagga
2761 gtatcttcaa gacagagaca ggtactatga ggaactcgcc atcgccaagg ccacggaaga
2821 agacttctgt gaggaggagg aggtcaaaat ccgtcagagg atcttccgtc ccaccaggaa
2881 acaaaggaag gaagagaggg ctacactagg actagtaact ggttcagaaa tcagaaaaag
2941 aaaccctgat gacttcaaac ctaaagggaa actgtgggcc gatgacaaca gaagtgttga
3001 ctacaatgag aaactggact ttgaggcccc cccaagcata tggtctagga ttgtgagttt
3061 tggttctggt tggggcttct gggtatcacc aagcctgttc ataacatcaa ctcatgtaat
3121 ccctgcaggc ataacagagg catttggagt ccccatcaaa caaatccagg tccacaaatc
3181 aggtgaattt tgccggttca gattcccaaa accaattaga ccagatgtga caggaatgat
3241 attggaagaa ggtgcgcctg agggcaccgt ggcaaccgta ctcatcaaac gccctaccgg
3301 agagctcatg ccccttgcag ccagaatggg gacacacgca accatgaaga ttcaaggccg
3361 catggttggc ggacagatgg gtatgttgct cactggttca aatgctaaag gaatggattt
3421 gggaacaact cctggtgatt gtggctgtcc ctacatctac aaaaggggca atgactatat
3481 agtcattggg gtgcacacag cagcagcccg tggtggaaac accgtcatct gtgccacaca
3541 gggaagtgag ggtgaggcaa ctcttgaggg tggagatgac aaaggaacat actgtggagc
3601 acccattcta ggccccgggg gggcaccaaa attgagcacc aaaaccaaat tttggaggtc
3661 atcgaacacg cctcttccac cagggacata tgagcctgcc tacctcggtg gccgtgaccc
3721 gcgtgttaag ggtgggccct ccttgcagca ggtaatgaga gaccagttga gaccattcac
3781 tgaacccagg ggtaaacctc caagaccaag tgtgttggag gcagccaaac aaaccatcat
3841 caatgtcctc gaacaagccc tggaccctcc acaaaaatgg acatacgcac aggcgtgtgc
3901 ttcacttgac aaaaccacct ccagcgggta tccccaccac gtccgaaaga atgaattctg
3961 gaatggtgag accttcactg gtaaattggc agaccaagca tcaaaagcaa atctgatgtt
4021 tgaggaaggg aaacacatga caccagtgta tacagcagcc ctcaaggacg agctggtcaa
4081 gactgacaaa gtctatggaa agatcaagaa gagactgctc tggggctctg acttgtccac
4141 catgatccgg tgcgccaggt cctttggtgg gcttatggat gagatgaagg cacactgcat
4201 atcgctccca gtccgagttg gcatgaacat gaatgaagat ggtccaataa tatttgagaa
4261 gcactccaga tacaagtacc actatgatgc agactactcc cgctgggatt caacacaaca
4321 gagggcagta ctagcagcag ccttggaaat catggtcagg ttctctgcag agccacaatt
4381 ggcacagata gtcgctgagg atctgctggc ccccagtgtg gtagatgtag gagactttaa
4441 aatttcaata aatgaggggc tcccctctgg tgtaccatgc acttctcaat ggaattccat
4501 cgcacactgg ctgctaaccc tctgtgcctt gtctgaagtc accaaactgt cccctgacat
4561 tgtacaggca aattccatgt tctcatttta cggtgatgac gagattgtca gcaccgatat
4621 aaaattggat cctgaaaagt taaccaccaa attgaaggag tatggcctga aaccaactcg
4681 cccagacaaa accgagggac ccctgatcat cagtgaggat ttgaatggac tcactttcct
4741 ccggaggacg gtgactcgtg acccagctgg ctggtttgga aaattggacc aaagctcaat
4801 attgaggcag atgtactgga ctagaggacc aaatcatgaa gaccccaatg agacaatgat
4861 accccactct caaagaccca tacagctcat ggcactgctt ggtgaggcct cccttcacgg
4921 accctctttc tatagcaaaa tcagtaaatt ggtcataact gaactcaaag aaggtgggat
4981 ggacttttac gtgccaagac aggaacccat gttcaggtgg atgaggtttt ctgacttgag
5041 cacgtgggag ggcgatcgca atctggctcc caattttgtg aatgaagatg gcgtcgaatg
5101 acgccgctcc atctactgat ggtgcagccg gcctcgtgcc agaaagtaac aatgaggtca
5161 tggctcttga acccgtggct ggtgccgcct tggcagcacc ggtcaccggt caaacaaata
5221 ttatagaccc ttggattaga gcaaattttg tccaggcccc caatggcgaa tttacagtct
5281 ctccccgtaa tgcccctggt gaagtgctat tgagtctaga attgggtcca gaattaaatc
5341 cttatctggc acatttagca agaatgtaca acgggtatgc cggtgggatg gaggtgcagg
5401 tcatgttggc tgggaatgcg ttcacagccg gcaagttggt cttcgccgct gtgccacctc
5461 acttcccggt tgaaaacctt agcccacagc aaattaccat gttccctcat gtgattatag
5521 atgtaaggac cttggaacct gttttattac cactccctga tgttaggaat aatttcttcc
5581 attataatca gaaagatgat cccaaaatga gaattgtggc tatgctttat acccccctta
5641 gatctaatgg ttcaggtgat gatgtgttta cagtttcctg cagggtgttg accagaccct
5701 cccctgattt cgatttcaca tatctggtgc caccaacagt ggaatctaaa acaaaaccat
5761 tcaccctccc aatcctcaca cttggggaac tttccaattc taggttccca gtgtccatag
5821 accagatgta caccagccct aatgaagtta tatcagtgca gtgtcaaaat ggtaggtgca
5881 cattggacgg ggaacttcaa gggacaacac aactccaagt cagtggcatt tgtgctttca
5941 agggggaagt gaccgcccat ttgcatgaca atgatcacct atacaatgtc accatcacaa
6001 acttaaatgg gtcccctttt gacccctccg aggacgttcc tgcccctctg ggcgtgcctg
6061 atttccaggg aagggtcttt ggtattatct cccaaagaga taaacataat agccctgggc
6121 ataatgaacc agcaaacagg ggacacgacg ctgtggtccc tacttacaca gcacagtaca
6181 ctccaaaatt gggtcagatt caaattggca catggcagac cgatgatctt acagtcaacc
6241 aaccagtcaa attcacccca gttggactca atgacactga acattttaat caatgggtgg
6301 tccccagata cgctggtgcc ctaaacctca acacaaacct tgccccttct gttgctccgg
6361 tatttccagg ggagcgcctg cttttcttca gatcatacgt tcccctcaag ggtggttatg
6421 gaaatccagc cattgattgc ctattaccac aagagtgggt gcaacacttc tatcaggaag
6481 ctgccccatc aatgagtgag gtggcccttg tcagatacat caacccggat actggtcggg
6541 cactgtttga ggccaagctc cacagagctg gtttcatgac agtctcgagc aacaccagtg
6601 ccccggtggt tgtgcctgcc aatgggtact tcagatttga ctcttgggtt aatcaattct
6661 attctctcgc ccccatggga actggaaatg ggcgtagaag ggttcaataa tggctggagc
6721 ttttatggct ggtcttgcag gggacgtgct cagcaatggg ctcagttcat taattaatgc
6781 aggtgctaat gcaataaatc agagggcaga atttgatttt aatcagaaat tacagcaaaa
6841 ttctttcaat catgataagg agatgttgca ggcccagatt caggcaacta agcagctgca
6901 ggcagacatg atggctataa aacagggggt cctgaccgct ggcggctttt cccctgctga
6961 tgcagccaga ggtgctgtga atgcgcccat gacacaggcg ctggattgga acggcacaag
7021 gtattgggca ccaggctcta tgaggaccac atcttattct ggaaaattca catcaatcgc
7081 cccagtgagg caggccgact tccagcacac ccaaagtcgg ccttcgagtg gctcttctgt
7141 gtcctccttt gccactcagt cttcaaggcc aactctgacc acaaccactg ggtcctcaca
7201 tggcacagcc tcatcaaatt caactcgcag cacaggcctc tcccaatcaa cggtctctag
7261 agctacatct aggactagtg agtgggttag agatcaaaat agaaatctgg aaccctacat
7321 gcatggtgcc ttacagacgg cctttgtcac cccaccttcc agcagggcgt ctgacgggac
7381 agtctcaacc gtcccaaaag gtgttttgga ctcctggaca cctgcgttca acacccgcag
7441 gcagccgctc tttgcacacc tccgtaagag gggggagtca catgcctagt gaaaaggtga
7501 aaatttgttt gattctacct ttt
//