Typing tool
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Typing tool
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Complete norovirus genomes
| LC209465 | GII.2 | |
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| GII.P2 |
ORF1: 1..5093
ORF2: 5074..6702
ORF3: 6702..7481
LOCUS LC209465 7525 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2010/GII.P2_GII.2/Hokkaido-16 RNA, nearly
complete genome.
ACCESSION LC209465
VERSION LC209465.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2010/GII.P2_GII.2/Hokkaido-16
ORGANISM Norovirus Hu/GII/JP/2010/GII.P2_GII.2/Hokkaido-16
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7525)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7525
/organism="Norovirus
Hu/GII/JP/2010/GII.P2_GII.2/Hokkaido-16"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2010/GII.P2_GII.2/Hokkaido-16"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934291"
/country="Japan: Hokkaido"
/collection_date="2010"
/note="genotype: GII.P2_GII.2"
gene <1..5093
/gene="POL"
CDS <1..5093
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BBB87013.1"
/translation="ASNDASAAAAANSNNDNAKSSSDGMLNNMAVTLKRALGARPKQP
APREKPPRPPRPPTPELIKRIPPPPPNDGDEPTVMFSTVGGVSGLPELTTVGQPPEAN
TAFSVPPLSLRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISVAK
VELTPLSLYWRPVYTPQYLIPPDTLRKLHGELFPYTAFENNCYAFCCWVLDLNDSWLS
RRMISRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDIIGKLKP
LNILNILASCDWTFAGIVESLILLAELFDVFWTPPDVSAMIAPLLGDYELQGPEDIAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKD
EANELAMVRAIEDAVLDLEAIENNHMTTLLKDKNSLAAYMKTLDMEEEKARKLSTKSA
SPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGKPGIGKTHLARELAKK
IASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLVNPAPLDYVNFEACSRRIDFLVYADAPEVEKAKR
DFPGQPDMWKDAYRSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTASSLVARASGL
LHERLDEYELQGPSLSTFNFDRNKIAAFRQLAAENKYGLVDTMRVGNQLRNVTTMDEL
KKAIKNITIRKCQIVYGGNTYTLESDGKGKVVVERVQSVSVQINNEIAGAVHHLRCAR
IRYYVKCVQEAIYSLLQIAGTVFVTSRIVSRMNIQNLWSRPLTEDADEATMKEGCPKP
REEEEFVVSSDDIKPEGKKGKNKSGRGKKHTAFSSKGLSDEEYEEYKRIREERNGKYS
IEEYLQDRDKYYEEVAIARATEEDFCEEEEVKIRQRIFRPTRKQRKEERANLGLVTGS
EIRKRNPDDFKPRGKLWADDDRSVDYNERISFEAPPSIWSRIVNFGSGWGFWVSPSLF
ITSTHVIPQGITEAFGVPIRQVQIHKSGEFCRLRFPKPIRTDVSGMILEEGAPEGTVA
TILIKRTTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGN
APKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPKPSVLEAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGYPHHVRKNEHWNGE
SFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKVYGKIKKRLLWGSDLATM
VRCARSFGGLMDELKAHCVTLPIRVGMNMNEDGPIVFEKHSRYRYHYDADYSRWDSTQ
QRAVLAAAMEIMVKFSAEPQLAQIVAEDLLSPSVVDVGDFKISINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTDLSPDIVQANSLFSFYGDDEIVSTDIKLDPEKLTGKLREYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQLYWTKGPNHE
DPFESMIPHSQRPIQLMSLLGEAALHEPSFYSKISKLVISELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPSLVNEDGVE"
gene 5074..6702
/gene="VP1"
CDS 5074..6702
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB87014.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPIENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNITITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVSQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6702..7481
/gene="VP2"
CDS 6702..7481
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB87015.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGRFTSTAPVRQADFQHTQSRPSSGSSVSSFTTQSSRPTLTTTT
GSSHGTASSNSTRSTNLSQSTVSRAASRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 tggcgtctaa cgacgcttct gctgccgctg ctgcaaacag caacaacgac aacgcaaaat
61 cttcaagtga cggaatgctt aacaacatgg ccgtcactct taaacgagcc ctcggggccc
121 ggcccaaaca gccggcccca agggaaaaac ccccaagacc ccctagacca ccaacaccag
181 aactaatcaa aagaatcccc cccccaccac ccaatgatgg ggacgaacca accgtgatgt
241 ttagcactgt aggtggtgtg tctggcctac ctgagctcac aacagtcggc caaccacctg
301 aagctaacac ggcctttagt gtgcctcccc tcagtctaag ggaaaacagg gacgctaagg
361 aaccgttgac tggaactatt ctggaaatgt gggatgggga aatttatcat tatggactgt
421 atgtggaaag agggcttgtg ttaggcgtgc acaagccgcc agctgccatc agcgtagcca
481 aagtggaact gacgcccctc tcactgtact ggagacctgt gtacacgcct cagtacctta
541 tacctcctga caccttgagg aaactccatg gtgaattgtt tccctataca gcctttgaaa
601 acaactgtta tgccttctgc tgttgggttt tggaccttaa cgactcatgg ctaagcagga
661 ggatgattag taggaccact ggctttttca ggccctacca agagtggaac aggaagcccc
721 ttccaactat ggatgactca aaattgaaga aggtcgcaaa catcgttctg tgtgcattgt
781 catcattgtt cactaggccc atcaaggata taattggcaa acttaaaccc ctcaacatcc
841 taaacattct ggcctcatgc gactggacct tcgctggcat agtagagtca ctaatcctct
901 tggctgaact ctttgatgta ttctggacac ccccagatgt gtctgcaatg atcgcacccc
961 tcctcggtga ctacgagcta caaggccccg aagacatcgc tgtggagctc gtgcccgttg
1021 tgatgggtgg gataggtctg gtgttgggat tcaccaaaga gaaaataggc aagatgctct
1081 cctctgcagc atcaactctg agggcatgca aagatcttgg agcctacgga ttggagatcc
1141 taaaactagt catgaaatgg tttttcccaa agaaggatga ggccaacgaa ctggctatgg
1201 ttagagccat tgaagacgct gtattagacc tggaggccat tgaaaacaac catatgacca
1261 ctctgttgaa agacaagaac agccttgcag cctacatgaa gaccttagat atggaagagg
1321 aaaaagctag gaagttatcc accaaatcag cctcccctga cattgtgggc accataaacg
1381 ccctgctggc taggatcgct gccgcgcgtt ctttagttca tagggccaag gaggagctct
1441 ccagcagacc aagaccggtc gttttgatga tctctggcaa accagggata ggaaagaccc
1501 acttggccag ggaactggca aagaaaattg cctcgacact cacaggagac caaagggtgg
1561 gcctcattcc acgtaatgga gtcgaccact gggatgccta caagggtgag agagtggtgc
1621 tctgggatga ttacgggatg agcaacccca tccacgatgc gctgaggttg caggaactgg
1681 cggatacatg tccattaact ctgaattgtg acaggattga aaacaaaggg aaggtttttg
1741 atagcgacgc gatcataatc accaccaatt tggtcaatcc tgcgccgctg gattatgtca
1801 actttgaggc ctgctccagg cgtatagact tccttgtgta tgctgatgcc ccagaagtcg
1861 agaaagcaaa gcgggacttc cctggtcaac cggacatgtg gaaggacgcc tatcgttctg
1921 acttctcaca cattaaacta caacttgcac cacaaggtgg gtttgacaaa aatggtaaca
1981 ccccacatgg taaaggagtg atgaagactc tcactgccag ctcactggtt gcgcgtgcct
2041 ctggtctctt gcacgaaaga ttggatgagt acgagttaca gggtccgtcc ctctcaacct
2101 tcaactttga ccgcaacaaa attgcagcgt ttagacaact cgccgctgaa aataagtatg
2161 gtctggtgga cacgatgagg gtgggcaacc agctcagaaa tgttacgacc atggatgaac
2221 tcaagaaggc catcaagaac atcacaatca gaaagtgcca gatagtctat ggtggcaaca
2281 cttacacgct tgagtctgac ggcaagggta aggttgtagt tgagagggtg cagagcgtca
2341 gcgtgcaaat caacaatgag atcgctggtg cagtgcacca ccttagatgt gccaggataa
2401 ggtattatgt caagtgtgtt caagaggcca tctactcact tctccaaatc gccggcacgg
2461 tgtttgtcac ttcacgcatc gtaagccgca tgaacatcca aaatttatgg tccaggccat
2521 taactgaaga tgcagatgag gccactatga aagaggggtg tcccaaacct agggaagaag
2581 aggaatttgt cgtctcctca gatgacatca agccagaggg caagaaaggt aaaaacaaga
2641 gtggccgggg caagaaacac acggcattct caagcaaagg tcttagtgat gaggagtacg
2701 aagagtacaa aaggatcaga gaggagagaa atggcaagta ctccatagag gaatacctac
2761 aggacaggga caaatactat gaagaggtgg ccattgccag ggcaactgaa gaagacttct
2821 gtgaagagga agaggttaag attcgtcaga ggatcttcag gccaacaaga aaacaacgca
2881 aggaagaaag agccaacctt ggcctcgtca ccgggtctga gatcaggaag aggaatccag
2941 atgacttcaa accaagagga aagctgtggg ccgacgatga caggagcgtc gactacaatg
3001 aaagaatcag ctttgaggcc ccaccaagca tttggtctag aattgtcaac tttggttctg
3061 gatgggggtt ttgggtgtca cctagcctct tcataacatc aacacatgtc atacctcaag
3121 gcataactga agcctttggt gtacctataa ggcaggtgca aatacacaaa tcaggcgaat
3181 tctgtcgcct aagattccca aaacccatca ggacagatgt atcaggtatg atactggagg
3241 agggagcgcc tgaaggcact gttgccacca tactcatcaa aagaaccact ggagaactga
3301 tgcctctcgc agcaagaatg ggcacccacg cgaccatgag aatacaagga cgcacggtgg
3361 gcggccagat gggaatgctg ctcactgggt ccaatgcaaa gagcatggat ctcggcacca
3421 cgcccggtga ctgtgggtgt ccctacattt acaaaagagg caatgactac atagtcattg
3481 gagttcacac agcagccgct cgtggcggaa acactgtcat ctgcgccaca caaggaagtg
3541 agggtgaggc cacgctcgag ggtggtgaca acaaaggaac atactgtggg gcgccaatcc
3601 taggccccgg gaatgcccca aagctgagca ctaaaaccaa attttggagg tcttccacaa
3661 caccactccc acccggcaca tacgagccgg catatctggg aggaaaagac ccccgagtca
3721 aaggtggacc atctctgcaa caagttatgc gagaccaact gaagccattt accgaacccc
3781 gtggtaagcc accaaaacca agtgttcttg aagctgctaa aaagacaatt atcaatgtgc
3841 tagagcaaac aatagacccc ccacaaaagt ggacgtacgc tcaagcgtgc gcgtctctcg
3901 acaaaaccac atctagtggg tacccccacc acgtgcgcaa aaacgagcac tggaatgggg
3961 aatctttcac aggaaaattg gctgaccagg catcaaaagc aaacctaatg tttgaagagg
4021 ggaagcacat gaccccagtt tacacagctg cccttaagga tgagttggtc aaaaccgaga
4081 aagtatacgg aaagataaag aagaggttgc tttggggctc tgaccttgcc accatggtac
4141 ggtgcgcgcg ctcctttggc ggtttgatgg acgaactcaa ggcccattgt gtgacacttc
4201 cgataagggt tggcatgaac atgaatgaag atggaccaat agtctttgag aaacattcca
4261 gatacaggta tcactatgat gcagattatt ccaggtggga ttcaacacag cagagagccg
4321 tcctggccgc ggccatggag attatggtta aattctcagc agaaccacaa ctagcccaaa
4381 tagttgcaga ggatctattg tcgcctagtg tagttgacgt gggcgacttc aaaatttcca
4441 tcaatgaagg attaccatcg ggtgtccctt gcacctctca atggaattca attgcacact
4501 ggctcctcac cttatgtgcc ctttctgaag ttacagacct ctctcctgac attgtgcagg
4561 ccaactccct cttctccttc tatggtgatg atgaaattgt gagcacagat attaaattag
4621 acccagaaaa gctgacgggg aagttgagag aatatggcct caaacccacc cgtccagaca
4681 aaactgaggg ccccctgatc attagcgagg atctgaatgg cctgactttc ctgaggagaa
4741 ccgtcactcg cgatcctgca ggatggtttg gcaaactgga ccaaagttct atacttaggc
4801 aattgtattg gaccaaaggc cccaatcatg aagacccctt tgagtcaatg attccacact
4861 cccagagacc catacaactc atgtcactct tgggcgaagc agcactgcat gaaccatcat
4921 tttacagcaa gatcagcaag cttgtgatat ctgaactgaa agaaggtgga atggattttt
4981 acgtgcccag gcaagaacct atgtttaggt ggatgaggtt ctcagatttg agcacgtggg
5041 agggcgatcg caatcttgct cccagtcttg tgaatgaaga tggcgtcgaa tgacgccgct
5101 ccatctactg atggtgcagc cggcctcgtg ccagaaagta ataatgaggt catggctctt
5161 gaacccgtgg ctggtgccgc cttggcagcc ccggtcaccg gtcaaacaaa tattatagac
5221 ccttggatta gagcaaattt tgtccaggcc cccaatggtg aatttacagt ctctccccgt
5281 aatgcccctg gtgaagtgct attgaatcta gagttgggtc cagaattaaa tccttatctg
5341 gcacatttag caagaatgta caacgggtat gccggtggga tggaggtgca ggtcatgttg
5401 gctgggaacg cgttcacagc cggcaagttg gtcttcgccg ctgtgccacc tcacttcccg
5461 attgaaaacc ttagcccaca gcaaattacc atgtttcctc atgtgattat agatgtaagg
5521 actttggaac ccgttttatt accactccct gatgttagaa ataatttctt ccactataat
5581 cagaaagatg atcccaagat gagaatcgtg gctatgcttt acacccccct taggtctaat
5641 ggttcaggtg atgacgtatt cacagtctcc tgcagggtgt tgactagacc ctcccctgat
5701 tttgatttca catacctggt gccaccaaca gtggagtcta aaacaaaacc attcaccctc
5761 ccaattctca cacttgggga actttccaat tctagattcc cagtgtccat agaccagatg
5821 tacaccagcc ccaatgaagt catatcagtg cagtgtcaaa atggtaggtg cacactggat
5881 ggggagctcc aaggaacgac ccaactccag gtcagtggca tttgtgcttt taagggagaa
5941 gtaactgccc acttgcatga caatgatcac ctatacaaca tcaccatcac aaacttgaat
6001 gggtcccctt ttgatccctc cgaggacatc cctgcccccc tgggcgtacc tgactttcag
6061 ggaagagtct ttggtatcat ctcccaaaga gacaagcaca attcccctgg acataatgaa
6121 ccagcaaata gaggacacga cgctgtggtc cctacctaca cagcacagta cactccaaaa
6181 ttgggtcaga ttcaaattgg cacatggcag accgacgatc tcacagtcag ccaaccagta
6241 aaattcaccc cagttggact caatgatact gaacatttta accaatgggt ggttcctaga
6301 tatgctggtg ctctaaatct taatacaaat cttgcccctt ctgttgctcc agtatttcca
6361 ggggagcgcc tactcttttt cagatcatat atccccctca agggtggtta tggaaatcca
6421 gccattgatt gcctactacc acaagagtgg gtgcaacatt tctaccagga agcagcccct
6481 tcaatgagtg aggtggccct tgtcagatac atcaacccgg atactggtcg ggcactgttc
6541 gaggccaagc tccacagagc tggtttcatg acagtttcaa gcaacaccag tgccccggtg
6601 gttgtgcctg ccaacggata ctttagattt gattcttggg tgaaccaatt ctattctctc
6661 gcccccatgg gaactgggaa tgggcgtaga agggttcaat aatggctgga gctttcgtag
6721 ctggtcttgc aggggacgtg ctcagcaatg ggctcagttc attaattaat gcaggtgcta
6781 atgcaataaa tcagagggca gaatttgatt ttaatcagag attacagcaa aattctttca
6841 atcatgacaa ggagatgttg caggctcaga ttcaggcaac taagcagctg caggcagaca
6901 tgatggctat aaagcagggg gtcttgaccg ctggcggctt ttcccctgct gacgcagcca
6961 gaggtgctgt gaatgcgccc atgacacagg cgctggattg gaatggcaca aggtattggg
7021 caccaggctc catgaggacc acatcttact ccggaagatt cacatcaacc gccccagtaa
7081 ggcaggccga ttttcaacac acccaaagcc ggccttcgag tggctcttct gtgtcttcct
7141 ttactactca gtcttcaagg ccaactctga caacaaccac tggatcctca catggcacag
7201 cctcatcaaa ttcgactcgc agcacaaacc tctcccaatc aacggtctct agggctgcat
7261 ctagaactgg tgagtgggtt agggatcaaa atagaaattt ggaaccctat atgcatggtg
7321 ccctacagac agcttttgtc accccgcctt ccagcagggc gtctgacggg acggtctcaa
7381 ccgtcccaaa aggtgttttg gactcctgga cacctgcgtt caacacccgc aggcagccgc
7441 tttttgcaca cctccgtaag aggggggagt cacaagctta gtgaaaaggt gaaaatttat
7501 ttaaaatgaa ttgatcttac ctttt
//