Typing tool
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Typing tool
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Complete norovirus genomes
| LC209462 | GII.2 | |
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| GII.P2 |
ORF1: 1..5090
ORF2: 5071..6699
ORF3: 6699..7478
LOCUS LC209462 7520 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2006/GII.P2_GII.2/Hokkaido-14 RNA, nearly
complete genome.
ACCESSION LC209462
VERSION LC209462.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2006/GII.P2_GII.2/Hokkaido-14
ORGANISM Norovirus Hu/GII/JP/2006/GII.P2_GII.2/Hokkaido-14
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7520)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7520
/organism="Norovirus
Hu/GII/JP/2006/GII.P2_GII.2/Hokkaido-14"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2006/GII.P2_GII.2/Hokkaido-14"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934288"
/country="Japan: Hokkaido"
/collection_date="2006"
/note="genotype: GII.P2_GII.2"
gene <1..5090
/gene="POL"
CDS <1..5090
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BBB87004.1"
/translation="SNDASAAAAVNSNDDNTKSSSDGMLNNMAVTLKRALGARPKQPA
PREKPPRPPRPPTPELIKRVPPPPPNDGDEPTVMFSTVGGVSGLPELTTVGQPPEANT
AFSVPPLSQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISIAKV
ELTPLSLYWRPVYTPQYLISPDTLKKLHGELFPYTAFENNCYAFCCWVLDLNDSWLSR
RMISRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKNIIGKLKPL
NILNILASCDWTFAGIVESLILLAELFDVFWTPPDVSAMIAPLLGDYELQGPEDIAVE
LVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKDE
ANELAMVRAIEDAVLDLEAIENNHMTTLLKDKNSLAAYMKTLDMEEEKARKLSTKSAS
PDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGKPGIGKTHLARELAKKI
ASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTL
NCDRIENKGKVFDSDAIIITTNLVNPAPLDYVNFEACSRRIDFLVYADAPEVEKAKRD
FPGQPDMWKDAYRPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTASSLVARASGLL
HERLDEYELQGPPLSTFNFDRNKIAAFRQLAAENKYGLVDTMRVGNQLRNVTTMDELK
KAIKNITIRKCQIVYGGNTYTLESDGKGKVVVERVQSASVQINNEIAGAVHHLRCARI
RYYVKCVQEAIYSLLQIAGTVFVTSRIVSRMNIQNLWSRPLTEDADEATMKEGCPKPR
EEEEFVVSSDDIKPEGKKGKNKSGRGKKHTAFSSKGLSDEEYEEYKRIREERNGKYSI
EEYLQDRDKYYEEVAIARATEEDFCEEEEIKIRQRIFRPTRKQRKEERANLGLVTGSE
IRKRNPDDFKPKGKLWADDDRSVDYNERISFEAPPSIWSRIVNFGSGWGFWVSPSLFI
TSTHVIPQGITEAFGVPIRQVQIHKSGEFCRLRFPKPIRTDVSGMILEEGAPEGTVAT
ILIKRTTGELMPLAARMGTHATMRIQGRVVGGQMGMLLTGSNAKSMDLGTTPGDCGCP
YIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNA
PKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKP
PKPSVLEAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGHPHHVRKNEHWNGES
FTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKVYGKIKKRLLWGSDLATMV
RCARSFGGLMDELKTHCVTLPIRVGMNMNEDGPIVFEKHSRYRYHYDADYSRWDSTQQ
RAVLAAAMEIMVKFSAEPQLAQIVAEDLLSPSVVDVGDFKISINEGLPSGVPCTSQWN
SIAHWLLTLCALSEITDLSPDIVQANSLFSFYGDDEIVSTDIKLDPEKLTGKLREYGL
KPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQLYWTKGPNHED
PFESMIPHSQRPIQLMSLLGEAALHEPSFYSKISKLVISELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPSLVNEDGVE"
gene 5071..6699
/gene="VP1"
CDS 5071..6699
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB87005.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGVALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLSLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6699..7478
/gene="VP2"
CDS 6699..7478
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB87006.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGRFTSTAPVRQADFQHNQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTNLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPVFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 cgtctaacga cgcttctgct gccgctgctg ttaacagcaa cgacgacaac acaaaatctt
61 caagtgacgg aatgcttaac aacatggccg tcacccttaa acgagccctt ggggcccggc
121 ccaaacagcc ggccccgagg gaaaaacccc caagaccccc tagaccacca acaccagaac
181 taatcaaaag agtccccccc ccaccaccca atgatgggga cgaaccaacc gtgatgttta
241 gcactgtagg tggtgtgtct ggcctacctg agctcacaac agtcggacaa ccacctgaag
301 ctaatacggc ctttagtgtg cctcccctca gccagaggga gaacagggac gctaaggaac
361 cgctaactgg gacaattctg gaaatgtggg atggggagat ctatcattat ggactgtatg
421 tggaaagagg gcttgtgtta ggcgtgcaca agccgccagc tgccatcagc atagccaaag
481 tggaattaac gcccctctcg ctgtactgga gacctgtgta cacgcctcaa tatcttatat
541 cacctgacac cttgaagaaa ctccatggtg aattgtttcc ctatacagcc tttgaaaaca
601 actgttatgc cttctgctgt tgggttttgg accttaacga ttcatggcta agcaggagga
661 tgattagtag gactactggc tttttcaggc cctaccaaga gtggaacagg aagccccttc
721 caactatgga cgactcaaaa ttgaagaagg tcgcaaacat cgttctgtgt gcattgtcat
781 cattgttcac tagacccatc aagaatataa ttggcaaact caaacccctc aacatcctaa
841 acattttggc ctcatgcgat tggaccttcg ctggcatagt agagtcacta atcctcttgg
901 ctgaactctt tgatgtgttc tggacacccc cagatgtgtc tgcaatgatc gcacccctcc
961 tcggtgacta cgagctacaa ggccccgaag acatcgctgt ggagctcgtg cccgttgtga
1021 tgggtgggat aggtctggtg ttgggattca ccaaagagaa aataggcaag atgctctcct
1081 ctgcagcatc aactctgagg gcatgcaaag atcttggagc ctacggattg gagatcttga
1141 aactagtcat gaaatggttt ttcccaaaga aggatgaggc caacgaactg gctatggtca
1201 gagccattga agacgctgta ttagacctgg aggccattga gaacaaccat atgaccactc
1261 tattgaaaga taagaacagc cttgcagcct acatgaagac cttggacatg gaagaggaaa
1321 aagctaggaa gttatccact aaatcagcct cccctgatat tgtgggcaca ataaacgccc
1381 tgctggctag gatcgccgcc gcgcgctcct tagttcatag ggccaaggag gagctctcta
1441 gcagaccaag accggtcgtc ctgatgatct ctggcaaacc agggatagga aagacccacc
1501 tagccagaga actggcaaag aaaattgcct caacactcac aggagaccag agggtgggcc
1561 tcatcccacg gaatggagtc gatcactggg atgcctacaa aggtgagaga gtggtgctct
1621 gggatgatta cgggatgagc aaccccatcc acgatgcgct gaggttgcag gaactggcag
1681 acacatgtcc attaactctg aattgtgaca ggattgaaaa taaggggaaa gtcttcgata
1741 gcgacgcaat cataatcacc accaatttgg tcaatcccgc gccgctggat tacgtcaact
1801 ttgaggcctg ctccagacgc atagacttcc ttgtgtatgc tgatgcccca gaagtcgaga
1861 aggcaaagcg ggacttccct ggtcaaccgg acatgtggaa ggacgcctat cgccctgact
1921 tctcacacat taaactacaa cttgcaccac aaggtgggtt tgacaaaaat ggtaacaccc
1981 cacatggtaa aggagtgatg aagactctca ctgccagttc actggttgcg cgtgcctctg
2041 gtctcttgca tgagagatta gatgagtacg agctacaggg cccgcccctc tcaaccttca
2101 actttgaccg caacaaaatt gcagcgttca ggcaactcgc cgctgaaaat aagtatggtc
2161 tggtggacac gatgagggtg ggcaaccagc tcagaaatgt tacgaccatg gatgagctca
2221 agaaggctat caagaacatc acaatcagaa agtgccagat agtctacggt ggcaacacct
2281 acacgcttga gtctgacggc aagggtaaag ttgtagttga gagggtgcag agcgccagcg
2341 tgcaaatcaa caatgagatc gctggtgcgg tacaccacct tagatgtgcc aggataaggt
2401 attatgtcaa gtgtgtccaa gaggccatct actcgctcct tcaaatcgcc ggcacggtgt
2461 ttgtcacttc acgcatcgta agccgcatga acatccaaaa tttatggtcc agaccattaa
2521 ctgaagatgc agatgaggcc accatgaaag aggggtgccc caaacctagg gaagaagagg
2581 aatttgtcgt ctcctcagat gatatcaagc cagagggcaa gaaaggtaaa aacaagagtg
2641 gccggggcaa gaaacacacg gcattctcaa gcaaaggtct cagtgatgag gagtacgaag
2701 agtacaaaag gatcagagag gagagaaatg gcaagtactc catagaggaa tacctacagg
2761 acagagacaa atactatgaa gaggtggcca ttgctagggc aactgaagaa gacttctgtg
2821 aagaggaaga gattaagatt cgtcagagga tcttcaggcc aacaagaaaa caacgcaagg
2881 aagaaagagc caacctcggc ctcgtcactg ggtctgagat caggaagagg aacccagatg
2941 acttcaaacc aaaaggaaag ctgtgggccg acgatgatag gagcgtcgac tacaatgaaa
3001 gaatcagctt tgaggcccca ccaagcattt ggtctagaat tgtcaacttt ggttctggat
3061 gggggttttg ggtgtcacct agcctcttca taacatcaac acatgtcata cctcaaggca
3121 taactgaggc ctttggtgta cctataaggc aggtgcaaat acacaagtca ggcgaattct
3181 gccgcctgag attcccaaaa cccatcagga cagatgtgtc aggcatgata ctggaggagg
3241 gagcgcctga aggcactgtt gccaccatac tcatcaaaag aaccactgga gagctgatgc
3301 ctctcgcagc aagaatgggc acccacgcga ccatgaggat acaaggacgc gtggtgggcg
3361 gccagatggg aatgctgctc actggatcca atgcaaagag catggatctt ggcaccacgc
3421 ccggtgactg tgggtgtccc tacatttaca aaaggggcaa tgattacata gtcattggag
3481 tccacacagc agccgctcgt ggcggaaaca ctgtcatctg cgccacacag ggcagtgagg
3541 gcgaggccac gctcgagggt ggtgacaaca aaggaacata ctgtggggcg ccaatcttag
3601 gccccgggaa tgccccaaaa ctgagcacta aaaccaaatt ctggaggtcc tccacaacac
3661 cacttccacc cggcacatac gagccggcgt atctgggagg aaaagacccc cgagtcaaag
3721 gtggaccatc tctgcaacaa gttatgcgag accaactgaa gccattcact gaaccccgtg
3781 gtaagccacc aaaaccaagt gtcctcgaag ctgctaaaaa gacaattatc aatgtgctag
3841 agcaaacaat agacccccca caaaagtgga cgtacgcaca agcgtgcgcg tctctcgaca
3901 aaaccacatc tagtgggcac ccccaccacg tgcgcaaaaa cgagcactgg aacggggaat
3961 ctttcacagg aaaattggct gaccaggcat caaaagcaaa cctaatgttt gaagagggga
4021 agcatatgac cccagtttac acagctgccc ttaaggatga gttggtcaaa actgagaaag
4081 tgtatgggaa gataaagaag agattgcttt ggggctccga tctggctacc atggtgcggt
4141 gcgcgcgctc ctttggcggt ttgatggacg aactcaaaac ccactgtgtg actcttccga
4201 taagggttgg catgaatatg aatgaagatg gaccaatagt ctttgagaaa cactccagat
4261 acaggtatca ttatgatgca gattattcca ggtgggattc aacacaacag agagccgttc
4321 tggccgcggc catggaaatt atggttaaat tctcagcaga gccacaacta gcccaaatag
4381 ttgcagagga cctattgtcg cctagcgtag ttgacgtggg cgacttcaaa atttcaatca
4441 atgaggggtt accatcgggt gtcccttgca cctctcaatg gaattccatc gcacactggc
4501 tcctcacctt atgtgccctt tctgaaatta cagacctctc tcctgacatt gtgcaggcca
4561 actctctctt ctccttttat ggtgatgatg aaattgtgag cacagatatt aaattagacc
4621 cagaaaagct gacggggaag ttgagagaat atggtctcaa acctactcgt ccagacaaaa
4681 ctgaggggcc cctgatcatt agcgaggatc tgaatggcct gactttcctg aggagaaccg
4741 tcactcgcga ccctgcgggg tggtttggca agctggatca aagttccata cttaggcaac
4801 tgtactggac caaaggtccc aatcatgaag atccctttga gtcaatgatt ccacactccc
4861 agagacccat acaactcatg tcactcttgg gcgaggcagc actgcatgaa ccatcattct
4921 acagcaagat cagcaagctt gtgatatctg agttgaaaga aggtggaatg gatttttacg
4981 tgcccaggca agaacctatg tttaggtgga tgagattctc agatttgagc acgtgggagg
5041 gcgatcgcaa tcttgctccc agtcttgtga atgaagatgg cgtcgaatga cgccgctcca
5101 tctactgatg gtgcagccgg cctcgtgcca gaaagtaata atgaggtcat ggctcttgaa
5161 cccgtggctg gtgtcgcctt ggcagccccg gtcaccggtc aaacaaatat tatagaccct
5221 tggattagag caaattttgt ccaggccccc aatggtgaat ttacagtctc tccccgtaat
5281 gcccctggtg aagtgctatt gagtctagag ttgggtccag aattaaatcc ttatctggca
5341 catttagcaa gaatgtacaa cgggtatgcc ggtgggatgg aggtgcaggt catgttggct
5401 gggaacgcgt tcacagccgg caagttggtc ttcgccgctg tgccacctca cttcccggtt
5461 gaaaacctta gcccacagca aattactatg ttccctcatg tgattataga tgtaaggact
5521 ttggaacctg ttttattacc actccctgat gttagaaata atttcttcca ttataatcag
5581 aaagatgatc ccaagatgag aattgtggct atgctttaca ccccccttag gtctaatggc
5641 tcaggtgatg atgtgtttac agtctcctgc agggtgttga ctagaccctc ccctgatttt
5701 gatttcacat atctggtgcc accaacagtg gaatctaaaa caaaaccatt caccctccca
5761 atcctcacac ttggggaact ctccaattct agattcccag tgtccataga ccagatgtac
5821 accagcccca atgaagttat atcagtgcag tgtcaaaatg gtaggtgcac actggatggg
5881 gagctccaag ggacaacaca actccaagtc agtggcattt gtgctttcaa gggagaagtg
5941 accgcccact tgcatgacaa tgatcaccta tataatgtca ccatcacaaa cttgaacggg
6001 tccccttttg acccctccga ggacatccct gcccctctgg gcgtacctga ttttcaggga
6061 agggtctttg gtatcatctc ccaaagagac aagcacaaca gccctggaca taatgaacca
6121 gcaaacaggg gacacgacgc tgtggtccct acttacacag cacagtacac tccaaaattg
6181 ggtcagattc aaattggcac atggcagacc gatgatctta cagtcaacca accagtcaaa
6241 ttcaccccag ttggactcaa tgacactgaa cattttaacc aatgggtggt ccccagatat
6301 gctggtgctc taaaccttaa cacaaacctt gccccttctg ttgctccagt atttccaggg
6361 gagcgcctgc tctttttcag atcatacatt cccctcaagg gtggttatgg aaatccagcc
6421 attgattgcc tactgccaca agagtgggtg caacatttct atcaggaagc agccccttca
6481 atgagtgagg tggcccttgt cagatacatc aacccggaca ctggtcgggc actgtttgag
6541 gccaagctcc acagagctgg tttcatgacg gtctcgagca acaccagtgc cccggtggtt
6601 gtgcctgcca atggatactt cagatttgat tcttgggtga accaatttta ctctcttgcc
6661 cccatgggaa ctggaaatgg gcgtagaagg gttcaataat ggctggagct tttgtagctg
6721 gtctcgcagg ggatgtgctc agcaatgggc tcagttcatt aattaatgca ggtgccaatg
6781 caataaatca gagggcagaa tttgatttta atcagagatt acagcaaaat tcttttaatc
6841 atgataagga gatgttgcag gctcagattc aggcaactaa gcagctgcag gcagacatga
6901 tggctataaa gcagggggtc ctgaccgctg gcggcttctc ccctgctgac gcagccagag
6961 gtgctgtgaa tgcgcccatg acacaggcgc tggattggaa cggcacaagg tattgggcac
7021 caggctccat gaggaccaca tcttactctg gaagattcac atcaaccgcc ccagtgaggc
7081 aggccgactt ccagcacaat caaagccggc cttcgagtgg ctcttctgtg tcctcctttg
7141 ctactcagtc ttcaaggcca actctgacta caaccactgg gtcctcacat ggcacagcct
7201 catcaaattc gactcgcagc acaaacctct cccaatcaac agtttctagg gctacatcta
7261 ggactggtga gtgggttaga gatcaaaata gaaatttgga accctatatg catggtgcct
7321 tacagacagc ctttgtcacc ccaccttcca gcagggcgtc tgacgggacg gtctcaaccg
7381 tcccaaaagg tgttttggac tcctggacac ctgtgttcaa cacccgcagg cagccgcttt
7441 ttgcacacct ccgtaagagg ggggagtcac aagcctagtg aaaaggtaaa aatttattta
7501 aaatgaattg atcctacctt
//