Typing tool
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Typing tool
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Complete norovirus genomes
| LC209461 | GII.2 | |
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| GII.P16 |
ORF1: 1..5088
ORF2: 5069..6697
ORF3: 6697..7476
LOCUS LC209461 7520 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2009/GII.P16_GII.2/Kanagawa-49 RNA, nearly
complete genome.
ACCESSION LC209461
VERSION LC209461.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2009/GII.P16_GII.2/Kanagawa-49
ORGANISM Norovirus Hu/GII/JP/2009/GII.P16_GII.2/Kanagawa-49
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7520)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7520
/organism="Norovirus
Hu/GII/JP/2009/GII.P16_GII.2/Kanagawa-49"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2009/GII.P16_GII.2/Kanagawa-49"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934287"
/country="Japan: Kanagawa"
/collection_date="2009"
/note="genotype: GII.P16_GII.2"
gene <1..5088
/gene="POL"
CDS <1..5088
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BBB87001.1"
/translation="MASNDATVAVACNNNNEKEKSSGEGLFTNMSSTLKKALGARPKQ
PAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEPVIRFEVKSGISGLPDLTTVPQPDVT
NTAFSVPPLSLRENREAKEPLTGAIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMA
KVELAPLSLYWRVVYTPQYLISPDTLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMVQRTTGFFRPYQEWNRKPLPTIDDSKIKKVANIFLCSLSTLFTRPIKDIIGKIK
PLNILNILATCDWTFAGIVESLILFAELFGVYWTPPDVSAMIAPLLGEYELQGPEDIA
VELVPVVMGGVGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLAAYMKTLDLEEEKARKLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVAK
KVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPL
TLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPDVEKAK
RDFPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERMDEFELQGPTITTFNFDRNRVTAFRQLAAENKYGLVDTMRIGNQLKGVKTMEE
LKQAIKNVSIKRCQIIYHGSTFDLESDGKGKVTVEKVKNTTVQTNNELAGALHHLRSA
RIRYYVKCVQEAIYSILQIAGAAFVTTRIARRMNIQELWSKPPLDQSESEAKEETPKL
EDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSE
IRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFI
TSTHVIPSGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVAT
VLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCP
YIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGA
PKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKP
PRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNGET
FTGKLADQASRANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMV
RCARAFGGLMNEMKAHCISLPIRVGMDMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQ
RAVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISISEGLPSGVPCTSQWN
SISHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLREYGL
KPTRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPNHED
PNETMVPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5069..6697
/gene="VP1"
CDS 5069..6697
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB87002.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNSPGEVLLSLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
VISQRDKHNTPGHNEPANRAHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVNFT
PVGLSDTDHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGTPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
gene 6697..7476
/gene="VP2"
CDS 6697..7476
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB87003.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQVQATKQLQADMMAIKQGILAAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTAYSGRFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSYGTASSNSTRSTNLSQSTVSRATSRTGDWVRDQNRNLEPYMHGALQTAFVTPPSS
RASSGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 atggcgtcta acgacgctac cgttgccgtt gcttgcaaca acaacaacga aaaggaaaaa
61 tcttcgggtg aaggcttatt tacaaatatg tcttccaccc taaagaaagc cctcggggct
121 cggcctaaac agcctgcccc gagggacaac tcacaaaaac ccccaagacc accaacgccc
181 gagttggtta aaaggatacc ccctccccca cctaatggcg aagaagaacc agtcattagg
241 tttgaggtca agagtggaat ttctggcctg cccgatctca cgacagttcc tcaaccagat
301 gtgaccaata cggcattcag tgttccaccg ttgagcttaa gagaaaacag ggaggccaag
361 gaaccgctga ctggggcaat aatagagatg tgggatggag agatatacca ctatggtttg
421 tatgtggaga aaggcttagt gttgggtgtg cacaaaccac ccgcagctat aagcatggca
481 aaagtggaat tagcaccgct gtcattatac tggcgtgtgg tgtacactcc ccaatacctc
541 atctcccctg acactctcaa gaggctcaac ggagaggcat tcccctacac tgcctttgac
601 aataactgtt atgccttttg ctgctgggtg ttagacctta atgactcatg gctcagcaga
661 agaatggtgc agagaacgac aggcttcttc agaccctacc aagagtggaa cagaaagccc
721 ctacccacca tagatgattc taaaattaag aaggtggcaa acatattcct atgttcattg
781 tctacactgt tcaccaggcc tataaaagac atcataggga aaatcaaacc actgaacatc
841 ttaaacattc tggcgacgtg tgattggacg ttcgccggaa tcgtagagtc tctaatatta
901 tttgctgaac tctttggagt ttactggaca cccccagatg tgtctgctat gatcgctccc
961 ttacttggcg aatacgagtt gcaggggcca gaagacatcg ccgttgagct cgtacctgta
1021 gtgatgggag gggttggttt ggtgctagga ttcaccaaag agaaaattgg caaaatgctg
1081 tcctcagcag cgtcaacgct cagggcttgc aaagaccttg gtgcctatgg tttagagata
1141 ctcaaattag tcatgaaatg gtttttccca aagaaagaag aagccaatga actagccatg
1201 gtgagagcaa tagaggatgc tgtgctggat cttgaggcga tagaaaacaa tcacatgaca
1261 accctgctga aagataaaga cagccttgca gcctacatga aaacactgga tctagaggag
1321 gagaaagcca gaaaactgtc cacaaaatct gcatctcctg acatagttgg gacaatcaac
1381 gccctgctgg ctcgaatagc ggcagctaga tcactagtcc acagggccaa ggaggagcta
1441 tctagcagaa tcagaccagt tgtcgttatg atatctggca agccagggat aggcaagacc
1501 cacttggcca gggaggtggc gaaaaaggtg gcgtccactc tcacaggaga tcaaagagtt
1561 ggactcatac cgagaaacgg tgtggaccat tgggatgcat acaaaggtga aagggtcgtg
1621 ttgtgggatg actatggcat gagtaaccct attcatgatg cactgcgcat acaagaattg
1681 gccgacacat gccccctcac cttgaattgt gacagaattg aaaataaggg aaaagttttt
1741 gatagtgatg ttataataat cacaacaaac cttgccaacc cagcccctct tgattatgtc
1801 aactttgagg cctgttccag gagaattgac ttcctggtgt acgccgaagc gccagatgtg
1861 gaaaaggcaa aacgggattt ccctggtcaa ccagatatgt ggaaggacgc cttcaaagcg
1921 gacttctcgc acatcaagtt gcaacttgcg cctcagggcg gctttgacaa gaatggcaac
1981 accccacatg ggaaaggagt gatgaagacc cttaccaccg gttctctgat tgcccgtgcg
2041 tcaggtttgc tacatgagag gatggatgaa tttgaacttc agggccccac aatcaccact
2101 ttcaactttg accggaacag agtcaccgct ttcagacaac tggctgctga gaacaaatat
2161 gggctggtgg acaccatgag gattggcaat caattgaaag gggtgaaaac catggaagaa
2221 ctcaagcaag ctatcaagaa tgtgtccatc aagaggtgcc agattatcta ccatgggtcc
2281 acgtttgacc ttgagtctga tggcaagggt aaagttacag tggaaaaggt caaaaacacc
2341 actgttcaga ccaacaacga attggccgga gccctgcacc acctcagaag tgctagaatc
2401 aggtattatg tcaaatgtgt gcaagaggca atctattcca tcctacaaat tgccggcgcc
2461 gcgttcgtca ccacacgcat tgcacgccgc atgaacatac aagagctctg gtcaaagcca
2521 ccattagacc agagcgagtc agaggctaag gaggagaccc ccaagttaga ggatgatgaa
2581 ttcatcattt cctccaagga cattaaggag gaagggaaga agggcaaaaa caaaactggc
2641 cgtggcaaga aacacactgc attctctagc aagggcttga gcgatgagga gtatgacgag
2701 tacaagagga taagagaaga gagaaatggg aagtactcta tagaggagta tcttcaagat
2761 agggacaggt actatgaaga actcgccatc gccaaggcca cggaagaaga cttttgtgag
2821 gaggaagaaa taaaaatccg ccagcggatc tttcgtccca ctagaaaaca aaggaaggaa
2881 gaaagggcca cgttagggct agtgactggt tcagaaatca gaaaaagaaa ccctgatgac
2941 ttcaaaccta aagggaaatt gtgggccgac gacaacagaa gtgttgacta caatgaaaaa
3001 ctggactttg aggccccccc aagcatatgg tctaggatcg taagctttgg ttcaggttgg
3061 ggcttctggg tgtcaccaag cctgtttata acatcaactc atgtgatccc ttcgggtata
3121 acagaggcat ttggagtccc tatcaaacag attcaagtcc acaaatcggg cgagttttgt
3181 cgattcagat tcccaaaacc aatcagacca gatgtaacag gaatgatcct ggaagaaggt
3241 gcgccagagg gcaccgtagc aaccgtgctc atcaagcgcc ccactggaga gctcatgccc
3301 ctcgcagcta gaatgggaac acacgcaacc atgaaaattc agggccgcat ggttggtggg
3361 cagatgggca tgttgctcac tggttcaaat gctaagggta tggatctggg gacaactccc
3421 ggtgactgtg gctgcccgta catttacaaa aggggcaatg actacatagt cattggagtg
3481 cacacagcag cagcccgagg tggaaatact gtcatctgtg ccacacaggg aagtgagggt
3541 gaagcgaccc tcgagggtgg tgacgacaaa ggaacatact gtggggcacc catcctgggc
3601 cctggagggg cgccaaagtt aagcacaaaa accaaatttt ggagatcatc aaatacgccc
3661 cttccaccag ggacatatga gcctgcctac cttggcggtc gtgatccgcg tgtaaagggt
3721 gggccttccc tacaacaagt catgagagat cagttgaagc ccttcaccga gcccaggggt
3781 aaacccccaa gacctagtgt gctggaggca gccaaacaga ccatcatcaa cgttctcgag
3841 caaactttgg accccccaca aaaatggacg tacgcacagg cgtgcgcttc acttgataaa
3901 accacctcta gtgggcaccc ccatcacgct cgaaagaatg aattctggaa cggtgagacc
3961 tttaccggca agttggcaga ccaagcatca agagcaaact taatgtttga ggaagggaaa
4021 catatgacac cagtgtacac agcagccctt aaggatgagt tggttaagac cgacaagatc
4081 tatgggaaga tcaagaaacg tctgctttgg ggctctgatt tatccaccat ggtccgatgt
4141 gctagggcct ttggtggact catgaacgag atgaaggcgc actgcatatc gctcccaatc
4201 cgagttggca tggatatgaa tgaggatggc ccaataatat ttgagaagca ctccagatat
4261 aaatatcact atgatgcaga ttactctcgc tgggactcaa cacaacagag ggctgttcta
4321 gcagcggcct tggaaataat ggtcagattc tctgcagaac cacaactggc ccaaacagtt
4381 gctgaggatc tgctggcccc cagtgtggta gatgtcggag acttcaaaat ttcaataagt
4441 gagggactcc cttctggtgt accatgcact tcccagtgga attccatctc acactggttg
4501 ctaactcttt gtgctttgtc tgaagtcacc aatctgtctc ctgacatcgt gcaggcaaat
4561 tctatgttct cattttacgg tgatgacgag atcgtcagca ccgacataaa attggatcct
4621 gaaaagttaa ccaccaaatt gagggagtat ggtctaaaac caactcgccc agacaaaacc
4681 gaggggcccc tgatcatcag tgaggatttg gacggtctca ccttcctccg gaggacggtt
4741 tctcgtgacc cagccggttg gtttggaaag ttagatcaaa gctcaatact aaggcagatg
4801 tattggacta gaggaccaaa ccatgaagac cccaatgaga caatggtacc ccactctcaa
4861 agacccatac agctcatggc actgcttggt gaggcctccc ttcacgggcc ctctttctac
4921 agcaagatta gtaaattggt cataactgaa cttaaagaag gtgggatgga cttttacgtg
4981 ccaagacagg aacccatgtt cagatggatg aggttttctg acttgagcac gtgggagggc
5041 gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg ccgctccatc
5101 tactgatggt gcagccggcc tcgtgccaga gagtaataat gaggtcatgg ctcttgaacc
5161 cgtggctggt gccgccttgg cagccccagt caccggtcaa acaaatatta tagacccttg
5221 gattagagca aattttgtcc aggcccccaa tggtgaattt acagtctctc cccgtaactc
5281 ccctggtgaa gtgctattga gtctagagtt gggtccagaa ttaaatcctt atctggcaca
5341 tttagcaaga atgtacaatg ggtatgccgg tgggatggag gtgcaggtca tgttggctgg
5401 gaacgcgttc acagccggca agttagtctt cgccgctgtg ccacctcact tcccggtcga
5461 aaaccttagc ccacagcaaa ttaccatgtt ccctcatgtg attatagatg tcaggacttt
5521 ggaacctgtt ttactaccac tccctgatgt taggaataac ttcttccatt acaatcagaa
5581 agatgatccc aagatgagaa ttgtggctat gctttatacc ccccttaggt ctaatggttc
5641 aggtgatgat gtgtttacag tctcctgcag ggtgttgact agaccctccc ctgattttga
5701 tttcacatat ctggtgcctc caacagtgga atctaaaaca aaaccattca ctctcccaat
5761 cctcactctt ggggaacttt ccaattccag attcccagtg tccatagacc agatgtacac
5821 cagccccaat gaagtcatat cagtgcagtg tcaaaatggc aggtgcacac tggatgggga
5881 acttcaagga acaacacaac tccaggtcag tggcatttgt gctttcaagg gagaagtgac
5941 tgcccacttg catgataatg atcacctgta taatgtcacc atcacaaact taaatgggtc
6001 cccttttgac ccctccgagg acattcccgc ccctctgggc gtacctgact ttcagggaag
6061 ggtctttggt gtcatctccc aaagagacaa acacaatacc cctggacata atgaaccagc
6121 aaacagggca cacgatgccg tggtccctac ttacacagca cagtacaccc caaaattggg
6181 tcagattcaa attggcacat ggcagactga cgatctcaca gtcaaccaac cagtcaattt
6241 caccccagtt ggacttagtg atactgacca ttttaaccaa tgggtggtcc ccaggtatgc
6301 tggtgcccta aaccttaaca caaaccttgc cccttctgtt gctccagtat ttccagggga
6361 gcgcctgctc tttttcagat catacatccc cctcaagggt ggttatggaa ctccagccat
6421 tgattgccta ttgccacaag agtgggtgca acatttctat caggaagcag ccccttcgat
6481 gagtgaggtg gcccttgtca gatacatcaa cccggatact ggtcgggcac tgtttgaggc
6541 caaactccac agagctggtt tcatgacagt ctcaagcaac accagtgccc cggtggttgt
6601 gcctgccaac ggatacttca gatttgattc ttgggtgaac caattctatt ctctcgcccc
6661 catgggaact ggaaatgggc gtagaaggat ccaataatgg ctggagcttt tgtagctggt
6721 cttgcagggg acgtgctcag caatgggctc agttcattaa ttaatgcagg tgctaatgca
6781 ataaatcaga gggcagaatt tgactttaat cagagattac agcaaaattc ttttaatcat
6841 gataaggaga tgttgcaggc tcaggtccag gcaactaagc agctgcaggc agatatgatg
6901 gctataaaac aggggatcct ggccgctggc ggcttttccc ctgctgatgc agccagaggt
6961 gctgtgaacg cacccatgac acaggcgctg gattggaacg gcacaaggta ttgggcacca
7021 ggctccatga ggactacagc ctactctggg agattcacat caaccgcccc agtgaggcag
7081 gctgatttcc agcacaccca aagccggcct tcgagtggct cttctgtgtc ctcctttgct
7141 actcagtcct caaggccgac cctgactaca accactgggt cctcatatgg cacagcctca
7201 tcaaattcga ctcgcagcac aaacctctcc caatcaacgg tctccagggc tacatctagg
7261 actggtgatt gggttagaga ccaaaacaga aatttggaac cttacatgca tggtgcctta
7321 cagacggcct ttgtcacccc accttccagc agggcgtcta gtgggacggt ctcaaccgtt
7381 ccaaaaggtg ttttggactc ctggacacct gcgtttaaca cccgcaggca gccgcttttc
7441 gcacacctcc gtaagagggg ggagtcacaa gcttagtgaa aaggtgaaaa tttatctaaa
7501 atgaattgat cttacctttt
//