Typing tool
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Typing tool
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Complete norovirus genomes
| LC209459 | GII.2 | |
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| GII.P16 |
ORF1: 1..5092
ORF2: 5073..6701
ORF3: 6701..7480
LOCUS LC209459 7524 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2010/GII.P16_GII.2/Kanagawa-51 RNA, nearly
complete genome.
ACCESSION LC209459
VERSION LC209459.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2010/GII.P16_GII.2/Kanagawa-51
ORGANISM Norovirus Hu/GII/JP/2010/GII.P16_GII.2/Kanagawa-51
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7524)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7524
/organism="Norovirus
Hu/GII/JP/2010/GII.P16_GII.2/Kanagawa-51"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2010/GII.P16_GII.2/Kanagawa-51"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934285"
/country="Japan: Kanagawa"
/collection_date="2010"
/note="genotype: GII.P16_GII.2"
gene <1..5092
/gene="POL"
CDS <1..5092
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BBB86995.1"
/translation="MASNDANVAVAYNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ
SAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
AKVELAPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKI
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLEDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKTME
ELKQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKH
ARIRYYVRCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEAPK
SEDDEFIISSKDIKEEGKKGKNKTGRGRKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGE
TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQVVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKEYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5073..6701
/gene="VP1"
CDS 5073..6701
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB86996.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLSLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDVPAPLGVPDFQGRVFG
TISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYVPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6701..7480
/gene="VP2"
CDS 6701..7480
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB86997.1"
/translation="MAGAFMAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGKFTSIAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTGLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESHA"
ORIGIN
1 gatggcgtct aacgacgcta acgttgccgt tgcttacaac aacaacaacg acaaggaaaa
61 atcttcaggt gaaggcttat tcacaaatat gtcttccacc ttaaagaaag ccctcggggc
121 ccggcccaaa cagtccgccc cgagggacaa ctcacaaaag cccccaagac caccaactcc
181 cgagttggtt aagaggatac cccctccccc acctaatggt gaagaagaag agccagtcat
241 taggtatgag gttaagagtg ggatctctgg cctgcccgag ctcacaacag tcccccaacc
301 ggatgtggcc aacacggcat tcagtgtccc accgctgagc ttgagagaaa acagggaggc
361 caaggaaccg ctgacagggg caatattaga gatgtgggat ggagagatat accactatgg
421 cctgtacgtg gagaaaggct tagtgttggg tgttcacaaa ccacctgcag ctataagcat
481 ggcaaaagtg gagctggcgc cgttgtcatt gtactggcgt gtggtctaca ccccccaata
541 cctcatctcc cctgaaactc tcaggaggct caacggagag gcattccctt acaccgcctt
601 tgacaacaat tgctatgcct tttgctgctg ggtattagac ctcaatgact catggcttaa
661 caggaggatg gtacaaagaa caacaggctt cttcagacct taccaagagt ggaacagaaa
721 acccctgcct actatggatg actccaaaat caagaaggtg gcaaacatat tcctgtgttc
781 attgtccacg ttgttcacca gacctataaa agacctcata ggaaaaatta aaccattaaa
841 catcttgaac atcctggcaa cgtgtgactg gacattcgcc ggaatagtgg agtctctgat
901 attacttgct gaactctttg gagttttctg gacaccccca gatgtgtctg ctatgatcgc
961 tcccttactt gaagactacg agttgcaagg gccagaagac ctcgccgttg agctcgtacc
1021 tgtggtaatg ggagggattg gtttggtgtt gggattcacc aaagagaaaa ttggcaaaat
1081 gttgtcctca gcagcatcaa cgctcagggc ttgtaaggat cttggtgcct atggcttaga
1141 gatactcaaa ttggtcatga agtggttctt cccaaagaaa gaagaggcca atgagctagc
1201 catggtgaga gctatagagg atgctgtgtt ggatcttgag gcaatagaaa ataatcacat
1261 gacaactctg ttgaaagaca aagacagcct agcaacctac atgaaaacac tagacatgga
1321 agaggagaaa gccagaagat tgtccacaaa atctgcatcc cctgacatag ttgggacgat
1381 caacgccctg ctggctcgaa tagcagcggc taggtcatta gtccacaggg ccaaggagga
1441 gttatctagc aggataagac cagtagttgt tatgatatct ggcaaaccag ggataggtaa
1501 aactcatttg gccagggagg tggcaagaaa ggtggcatcc actctcacag gggatcaaag
1561 agtcgggctc ataccgagaa acggtgtgga ccactgggat gcatacaaag gtgagagagt
1621 cgtgctgtgg gacgactatg gcatgagcaa ccccattcat gatgctttgc gcatacaaga
1681 attggctgat acgtgtcccc ttaccttaaa ttgcgacaga attgaaaata agggaaaagt
1741 ttttgacagt gaagtcataa taattacaac aaaccttgcc aatccagctc cacttgatta
1801 tgtcaacttt gaggcctgtt ccaggagaat tgacttcctg gtgtacgccg aggcaccaga
1861 agtagaaaag gcaaaacgag actttcctgg tcaaccagat atgtggaagg acgccttcaa
1921 gtcggacttt tcacatatca agttgcaact tgcacctcag ggcggctttg acaagaatgg
1981 taacacccca catgggaaag gagtgatgaa gaccctcacc accggttccc tgattgcccg
2041 tgcatcaggc ttactgcatg agaggatgga tgaatttgaa ctccaaggcc ccacagttac
2101 caccttcaat ttcgaccgga acagaatcac cgcattcaga caattggccg cagaaaacaa
2161 gtatgggttg gtggacacca tgagagttgg caatcaatta aaaggggtga aaaccatgga
2221 agaactcaaa caagcaatca agaatgtgat catcaagagg tgccggatca tctacggtgg
2281 ctccacgtat gaccttgaat ctgatggcaa gggcaaagtt ttggtggaaa aggtcaagaa
2341 cacctctata cagaccaaca acgagttggc tggagccctg catcacctca aacatgcccg
2401 aatcaggtat tatgtcagat gtgtgcaaga agcagtttac tctatcatac aaattgccgg
2461 cgctgcgttt gtcaccacac gcattgcacg ccgcatgaac atacaagagc tttggtcgaa
2521 gccaccatta gaccaaaatg aatcagaggc taaggaagag gcccccaagt cagaagatga
2581 cgagttcatc atatcttcta aggacatcaa ggaggaagga aagaagggca aaaacaaaac
2641 tggccgtggt aggaaacaca ctgcattctc tagcaagggc ttgagcgatg aggagtatga
2701 cgagtacaag aggataagag aagagagaaa tgggaagtac tctatagagg agtatcttca
2761 agacagagac aggtactatg aggaactcgc catcgccaag gccacggaag aagacttctg
2821 tgaagaggag gaggtcaaaa tccgtcagag gatcttccgt cccaccagga aacaaaggaa
2881 ggaagagagg gctacactag gactagtaac tggttcagaa atcagaaaaa gaaaccctga
2941 tgacttcaaa cctaaaggga aactgtgggc cgatgacaac agaagtgttg actacaatga
3001 gaaactggat tttgaggccc ccccaagcat atggtctagg attgtgagtt ttggttctgg
3061 ttggggcttc tgggtatcac caagcctgtt cataacatca actcatgtaa tccctgcagg
3121 cataacagag gcatttggag tccccatcaa acaaatccag gtccacaaat caggtgaatt
3181 ttgccggttc agattcccaa aaccaattag accagatgtg acaggaatga tattggaaga
3241 aggtgcgcct gagggcaccg tggcaaccgt actcatcaaa cgccctaccg gagagctcat
3301 gccccttgca gccagaatgg ggacacacgc aaccatgaag attcaaggcc gcatggttgg
3361 cggacagatg ggcatgttgc tcactggttc aaatgccaaa ggaatggatt tgggaacaac
3421 tcctggtgat tgtggctgtc cctacatcta caaaaggggc aatgactata tagtcattgg
3481 ggtgcacaca gcagcagccc gtggtggaaa caccgtcatc tgtgccacac agggaagtga
3541 gggtgaggca actcttgagg gtggagatga caaaggaaca tactgtggag cacccattct
3601 aggccccggg ggggcaccaa aattgagcac caaaaccaaa ttttggaggt catcgaacac
3661 gcctcttcca ccagggacat atgagcctgc ctacctcggt ggccgtgacc cgcgtgttaa
3721 gggtgggccc tccttgcagc aggtaatgag agaccagttg aaaccattca ctgaacccag
3781 gggtaaacct ccaagaccaa gtgtgttgga ggcagccaaa caaaccatca tcaatgtcct
3841 cgaacaaacc ctggaccctc cacaaaaatg gacatacgca caggcgtgtg cttcacttga
3901 caaaaccacc tccagcgggc atccccacca cgtccgaaag aatgaattct ggaatggtga
3961 gaccttcact ggtaaattgg cagaccaagc atcaaaagca aatctgatgt ttgaggaagg
4021 gaaacacatg acaccagtgt atacagcagc cctcaaggac gagctggtca agactgacaa
4081 aatctatgga aagatcaaga agagactgct ctggggctct gacttgtcca ccatgatccg
4141 gtgcgccagg tcctttggtg ggcttatgga tgagatgaag gcacactgca tatcactccc
4201 agtccgagtt ggcatgaaca tgaatgaaga tggtccaata atatttgaga agcactccag
4261 atacaagtac cactatgatg cagactactc ccgctgggat tcaacacaac aaagggcagt
4321 actagcagca gccttggaaa ttatggtcag gttctctgca gagccacaat tggcacaggt
4381 agtcgctgag gatctgctgg cccccagtgt ggtagatgta ggagacttta aaatttcaat
4441 aaatgagggg ctcccctctg gtgtaccatg cacttctcaa tggaattcca tcgcacactg
4501 gctgctaacc ctctgtgcct tgtctgaagt caccaaactg tcccctgaca ttgtacaggc
4561 aaattccatg ttctcatttt acggtgatga cgagattgtc agcaccgata taaaattgga
4621 ccctgaaaag ttaaccacca aattgaagga gtatggcctg aaaccaactc gcccagacaa
4681 aaccgaggga cccctgatca tcagtgagga tttgaatgga ctcactttcc tccggaggac
4741 ggtgactcgt gacccagctg gctggtttgg aaaattggac caaagctcaa tattgaggca
4801 gatgtactgg actagaggac caaatcatga agaccccaat gagacaatga taccccactc
4861 tcaaagaccc atacagctca tggcactgct tggtgaggcc tcccttcacg gaccctcttt
4921 ctacagcaaa atcagtaaat tggtcataac tgaactcaaa gaaggtggga tggactttta
4981 cgtgccaaga caggaaccca tgttcaggtg gatgaggttt tctgacttga gcacgtggga
5041 gggcgatcgc aatctggctc ccaattttgt gaatgaagat ggcgtcgaat gacgccgctc
5101 catctactga tggtgcagcc ggcctcgtgc cagaaagtaa caatgaggtc atggctcttg
5161 aacccgtggc tggtgccgcc ttggcagcac cggtcaccgg tcaaacaaat attatagacc
5221 cttggattag agcaaatttt gtccaggccc ccaatggcga atttacagtc tctccccgta
5281 atgcccctgg tgaagtgcta ttaagtctag agttgggtcc agaattaaat ccttatctgg
5341 cacatttagc aagaatgtac aacgggtatg ccggtgggat ggaggtgcag gtcatgttgg
5401 ctgggaatgc gttcacagcc ggcaagttgg tcttcgccgc tgtgccacct cacttcccgg
5461 ttgaaaacct tagcccacag caaattacca tgttccctca tgtgattata gatgtgagga
5521 ccttggaacc tgttttatta ccactccctg atgttaggaa taatttcttc cattataatc
5581 agaaagatga tcccaaaatg agaattgtgg ctatgcttta tacccccctt agatctaatg
5641 gttcaggtga tgatgtgttc acagtttcct gcagggtgtt gaccagaccc tcccctgatt
5701 tcgatttcac atatctggtg ccaccaacag tggaatccaa aacaaaacca ttcaccctcc
5761 caatcctcac acttggggaa ctttccaatt ctaggttccc agtgtccata gaccagatgt
5821 acaccagccc taatgaagtt atatcagtgc agtgtcaaaa tggtaggtgc acattggacg
5881 gggaacttca agggacaaca caactccaag tcagtggcat ttgtgctttc aagggggaag
5941 tgaccgccca tttgcatgac aatgatcacc tatacaatgt caccatcaca aacttgaatg
6001 ggtccccttt tgacccctcc gaggacgttc ctgcccctct gggcgtgcct gatttccagg
6061 gaagggtctt tggtactatt tcccaaagag ataaacataa tagccctggg cataatgaac
6121 cagcaaacag gggacacgac gctgtggtcc ctacttacac agcacagtac accccaaaat
6181 tgggtcagat tcaaattggc acatggcaga ccgatgatct tacagtcaac caaccagtca
6241 aattcacccc agttggactc aatgacactg aacattttaa tcagtgggtg gtccccagat
6301 acgctggtgc cctaaacctc aacacaaacc ttgccccttc tgttgctccg gtatttccag
6361 gggagcgcct gcttttcttc agatcatacg ttcccctcaa gggtggttat ggaaatccag
6421 ccattgattg cctattacca caagagtggg tgcaacactt ctatcaggag gctgccccat
6481 caatgagtga ggtggccctt gtcagataca tcaacccgga tactggtcgg gcactgtttg
6541 aggccaagct ccacagagct ggtttcatga cagtctcgag caacaccagt gccccggtgg
6601 ttgtgcctgc caatgggtac ttcagatttg actcttgggt taatcaattc tattctctcg
6661 cccccatggg aactggaaat gggcgtagaa gggttcaata atggctggag cttttatggc
6721 tggtcttgca ggggacgtgc tcagcaatgg gctcagttca ttaattaatg caggtgctaa
6781 tgcaataaat cagagggcag aatttgattt taatcagaaa ttacagcaaa attctttcaa
6841 tcatgataag gagatgttgc aggcccagat tcaggcaact aagcagctgc aggcagacat
6901 gatggctata aaacaggggg tcctgaccgc tggcggcttt tcccctgctg atgcagccag
6961 aggtgctgta aatgcgccca tgacacaggc gctggattgg aacggcacaa ggtattgggc
7021 accaggctcc atgaggacca catcttattc tggaaaattc acatcaatcg ccccagtgag
7081 gcaggccgac ttccagcaca cccaaagccg gccttcgagt ggctcttctg tgtcctcctt
7141 tgccactcag tcttcaaggc caactctgac cacaaccact gggtcctcac atggcacagc
7201 ctcatcaaat tcaactcgca gcacaggcct ctcccaatca acggtctcta gagctacatc
7261 taggactagt gagtgggtta gagatcaaaa tagaaatttg gaaccctaca tgcatggtgc
7321 cttacagacg gcctttgtca ccccaccttc cagcagggcg tctgacggga cagtctcaac
7381 cgtcccaaaa ggtgttttgg actcctggac acctgcgttc aacacccgca ggcagccgct
7441 ctttgcacac ctccgtaaga ggggggagtc acatgcctag tgaaaaggtg aaaatttgtt
7501 tagaataaat tgattctacc tttt
//