Typing tool
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Typing tool
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Complete norovirus genomes
| LC209453 | GII.2 | |
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| GII.P16 |
ORF1: 1..5087
ORF2: 5068..6696
ORF3: 6696..7475
LOCUS LC209453 7515 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Osaka-023 RNA, nearly
complete genome.
ACCESSION LC209453
VERSION LC209453.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Osaka-023
ORGANISM Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Osaka-023
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7515)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7515
/organism="Norovirus
Hu/GII/JP/2011/GII.P16_GII.2/Osaka-023"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2011/GII.P16_GII.2/Osaka-023"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934279"
/country="Japan: Osaka"
/collection_date="2011"
/note="genotype: GII.P16_GII.2"
gene <1..5087
/gene="POL"
CDS <1..5087
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BBB86977.1"
/translation="SNDANVAVAYNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQSA
PRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQPDVAN
TAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMAK
VELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLN
RRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLENYELQGPEDLAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLIMKWFFPKKE
EANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSA
SPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARK
VASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLT
LNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKR
DFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGL
LHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKTMEEL
KQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKHAR
IRYYVRCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKGEAPKSE
DDEFIISSKDIKEEGKKGKNKTGRGRKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE
EYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVTGSEI
RKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFIT
STHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATV
LIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPY
IYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAP
KLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPP
RPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGETF
TGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLSTMIR
CARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIMFEKHSRYKYHYDADYSRWDSTQQR
AVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQWNS
IAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKEYGLK
PTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDP
NETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRW
MRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5068..6696
/gene="VP1"
CDS 5068..6696
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB86978.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLSLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDVPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYVPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6696..7475
/gene="VP2"
CDS 6696..7475
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB86979.1"
/translation="MAGAFMAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGKFTSIAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGAASSNSTRSTGLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESHA"
ORIGIN
1 cgtctaacga cgctaacgtt gccgttgctt acaacaacaa caacgacaag gaaaaatctt
61 caggtgaagg cttattcaca aatatgtctt ccaccttaaa gaaagccctc ggggcccggc
121 ccaaacagtc cgccccgagg gacaactcac aaaagccccc aagaccacca actcccgagt
181 tggttaagag gataccccct cccccaccta atggtgaaga agaagagcca gtcattaggt
241 atgaggttaa gagtgggatc tctggcctgc ccgagctcac aacagtcccc caaccggatg
301 tggccaacac ggcattcagt gtcccaccgc tgagcttgag agaaaacagg gaggccaagg
361 aaccgctgac aggggcaata ttagagatgt gggatggaga gatataccac tatggcctgt
421 acgtggagaa aggcttagtg ttgggtgtgc acaaaccacc tgcagctata agcatggcaa
481 aagtggagct gacgccgttg tcattgtact ggcgtgtggt ctataccccc caatacctca
541 tctcccctga aactctcagg aggctcaacg gagaggcatt cccttacacc gcctttgaca
601 acaattgcta tgccttttgc tgctgggtat tagacctcaa tgactcatgg cttaacagga
661 ggatggtaca aagaacaaca ggcttcttca gaccttacca agagtggaac agaaaacccc
721 tgcctactat ggatgactcc aaaatcaaga aggtggcaaa catattcctg tgttcattgt
781 ccacgttgtt caccagacct ataaaagacc tcataggaaa aattaaacca ttaaacatct
841 tgaacatcct ggcaacgtgt gactggacat tcgccggaat agtggagtct ctgatattac
901 ttgctgaact ctttggagtt ttctggacac ccccagatgt gtctgctatg atcgctccct
961 tacttgaaaa ctacgagttg caagggccag aagacctcgc cgttgagctc gtacctgtgg
1021 taatgggagg gattggtttg gtgttgggat tcaccaaaga gaaaattggc aaaatgttgt
1081 cctcagcagc atcaacgctc agggcttgta aggatcttgg tgcctatggc ttagagatac
1141 tcaaattgat catgaagtgg ttcttcccaa agaaagaaga ggccaatgag ctagccatgg
1201 tgagagctat agaggatgct gtgttggatc ttgaggcaat agaaaataat cacatgacaa
1261 ctctgttgaa agacaaagac agcctagcaa cctacatgaa aacactggac atggaagagg
1321 agaaagccag aagattgtcc acaaagtctg catcccctga catagttggg acgatcaacg
1381 ccctgctggc tcgaatagca gcggctaggt cattagtcca cagggccaag gaggagttat
1441 ctagcaggat aagaccagta gttgttatga tatctggcaa accagggata ggtaaaactc
1501 atttggccag ggaggtggca agaaaggtgg catccactct cacaggggat caaagagttg
1561 ggctcatacc gagaaacggt gtggaccact gggatgcata caaaggtgag agagtcgtgc
1621 tgtgggacga ctatggcatg agcaacccca ttcatgatgc tttgcgcata caagaattgg
1681 ctgatacgtg tccccttacc ttaaattgcg acagaattga aaataaggga aaagtctttg
1741 acagtgaagt cataataatt acaacaaacc ttgccaatcc agctccactt gattatgtca
1801 actttgaggc ctgttccagg agaattgact tcctggtgta cgccgaggca ccagaagtag
1861 aaaaggcaaa acgagacttt cctggtcaac cagatatgtg gaaggacgcc ttcaagtcgg
1921 acttttcaca tatcaagttg caacttgcac ctcagggcgg ctttgacaag aatggtaaca
1981 ccccacatgg gaaaggagtg atgaagaccc tcaccaccgg ttccctgatt gcccgtgcat
2041 caggcttact gcatgagagg atggatgaat ttgaactcca aggccccaca gttaccacct
2101 tcaatttcga ccggaacaga atcaccgcat tcagacaatt ggccgcagaa aacaagtatg
2161 ggttggtgga caccatgaga gttggcaatc aattaaaagg ggtgaaaacc atggaagaac
2221 tcaaacaagc aatcaagaat gtgatcatca agaggtgccg gatcatctac ggtggctcca
2281 cgtatgacct tgaatctgat ggcaagggca aagttttggt ggaaaaggtc aagaacacct
2341 ctatacagac caacaacgag ttggctggag ccctgcatca cctcaaacat gcccgaatca
2401 ggtattatgt cagatgtgtg caagaagcag tttactctat catacaaatt gccggcgctg
2461 cgtttgtcac cacacgcatt gcacgccgca tgaacataca agagctttgg tcgaagccac
2521 cattagacca aaatgaatca gaggctaagg gagaggcccc caagtcagaa gatgacgagt
2581 tcatcatatc ttctaaggac atcaaggagg aaggaaagaa gggcaaaaac aaaactggcc
2641 gtggcaggaa acacactgca ttctctagca agggcttgag cgatgaggag tatgacgagt
2701 acaagaggat aagagaagag agaaatggga agtactctat agaggagtat cttcaagaca
2761 gagacaggta ctatgaggaa ctcgccatcg ccaaggccac ggaagaagac ttctgtgagg
2821 aggaggaggt caaaatccgt cagaggatct tccgtcccac caggaaacaa aggaaggaag
2881 agagggctac actaggacta gtaactggtt cagaaatcag aaaaagaaac cctgatgact
2941 tcaaacctaa agggaaactg tgggccgatg acaacagaag tgttgactac aatgagaaac
3001 tggactttga ggccccccca agcatatggt ctaggattgt gagttttggt tctggttggg
3061 gcttctgggt atcaccaagc ctgttcataa catcaaccca tgtaatccct gcaggcataa
3121 cagaggcatt tggagtcccc atcaaacaaa tccaggtcca caaatcaggt gaattttgcc
3181 ggttcagatt cccaaaacca attagaccag atgtgacagg aatgatattg gaagaaggtg
3241 cgcctgaggg caccgtggca accgtactca tcaaacgccc taccggagag ctcatgcccc
3301 ttgcagccag aatggggaca cacgcaacca tgaagattca aggccgcatg gttggcggac
3361 agatgggtat gttgctcact ggttcaaatg ctaaaggaat ggatttggga acaactcctg
3421 gtgattgtgg ctgtccctac atctacaaaa ggggcaatga ctatatagtc attggagtgc
3481 acacagcagc agcccgtggt ggaaacaccg tcatctgtgc cacacaggga agtgagggtg
3541 aggcaactct tgagggtgga gatgacaaag gaacatactg tggagcaccc attctaggcc
3601 ccgggggggc accaaaattg agcaccaaaa ccaaattttg gaggtcatcg aacacgcctc
3661 ttccaccagg gacatatgag cctgcctacc tcggtggccg tgacccgcgt gttaagggtg
3721 ggccctcctt gcagcaggta atgagagacc agttgaaacc attcactgaa cccaggggta
3781 aacctccaag accaagtgtg ttggaggcag ccaaacaaac catcatcaat gtcctcgaac
3841 aaaccctgga ccctccacaa aaatggacat acgcacaggc gtgtgcttca cttgacaaaa
3901 ccacctccag cgggcatccc caccacgtcc gaaagaatga attctggaat ggtgagacct
3961 tcactggtaa attggcagac caagcatcaa aagcaaatct gatgtttgag gaagggaaac
4021 acatgacacc agtgtataca gcagccctca aggacgagct ggtcaagact gacaaagtct
4081 atggaaagat caagaagaga ctgctctggg gctctgactt gtccaccatg atccggtgcg
4141 ccaggtcctt tggtgggctt atggatgaga tgaaggcaca ctgcatatca ctcccagtcc
4201 gagttggcat gaacatgaat gaggatggtc caataatgtt tgagaagcac tccagataca
4261 agtaccacta tgatgcagac tactcccgct gggattcaac acaacagagg gcagtactag
4321 cagcagcctt ggaaatcatg gtcaggttct ctgcagagcc acaattggca cagatagtcg
4381 ctgaggatct gctggccccc agtgtggtag atgtaggaga ctttaaaatt tcaataaatg
4441 aggggctccc ctctggtgta ccatgcactt ctcaatggaa ttccatcgca cactggctgc
4501 taaccctctg tgccttgtct gaagtcacca aactgtcccc tgacattgta caggcaaatt
4561 ccatgttctc attttacggt gatgacgaga ttgtcagcac cgatataaaa ttggaccctg
4621 aaaagttaac caccaaattg aaggagtatg gcctgaaacc aactcgccca gacaaaaccg
4681 agggacccct gatcatcagt gaggatttga atggactcac tttcctccgg aggacggtga
4741 ctcgtgaccc agctggctgg tttggaaaat tggaccaaag ctcaatattg aggcagatgt
4801 actggactag aggaccaaat catgaagacc ccaatgagac aatgataccc cactctcaaa
4861 gacccataca gctcatggca ctgcttggtg aggcctccct tcacggaccc tctttctaca
4921 gcaaaatcag taaattggtc ataactgaac tcaaagaagg tgggatggac ttttacgtgc
4981 caagacagga acccatgttc aggtggatga ggttttctga cttgagcacg tgggagggcg
5041 atcgcaatct ggctcccaat tttgtgaatg aagatggcgt cgaatgacgc cgctccatct
5101 actgatggtg cagccggcct cgtgccagaa agtaacaatg aggtcatggc tcttgaaccc
5161 gtggctggtg ccgccttggc agcaccggtc accggtcaaa caaatattat agacccttgg
5221 attagagcaa attttgtcca ggcccccaat ggcgaattta cagtctctcc ccgtaatgcc
5281 cctggtgaag tgctattaag tctagaattg ggtccagaat taaatcctta tctggcacat
5341 ttagcaagaa tgtacaacgg gtatgccggt gggatggagg tgcaggtcat gttggctggg
5401 aatgcgttca cagccggcaa gttggtcttc gccgctgtgc cacctcactt cccggttgaa
5461 aaccttagcc cacagcaaat taccatgttc cctcatgtga ttatagatgt aaggaccttg
5521 gaacctgttt tattaccact ccctgatgtt aggaataatt tcttccatta taatcagaaa
5581 gatgatccca aaatgagaat tgtggctatg ctttataccc cccttagatc taatggttca
5641 ggtgatgatg tgttcacagt ttcctgcagg gtgttgacca gaccctcccc tgatttcgat
5701 ttcacatatc tggtgccacc aacagtggaa tctaaaacaa aaccattcac cctcccaatc
5761 ctcacacttg gggaactttc caattctagg ttcccagtgt ccatagacca gatgtacacc
5821 agccctaatg aagttatatc agtgcagtgt caaaatggta ggtgcacatt ggacggggaa
5881 cttcaaggga caacacaact ccaagtcagt ggcatttgtg ctttcaaggg ggaagtgacc
5941 gcccatttgc atgacaatga tcacctatac aatgtcacca tcacaaactt gaatgggtcc
6001 ccttttgacc cctccgagga cgttcctgcc cctctgggcg tgcctgattt ccagggaagg
6061 gtctttggta ttatctccca aagagacaaa cataatagcc ctgggcataa tgaaccagca
6121 aacaggggac acgacgctgt ggtccctact tacacagcac agtacactcc aaaattgggt
6181 cagattcaaa ttggcacatg gcagaccgat gatcttacag tcaaccaacc agtcaaattc
6241 accccagttg gactcaatga cactgaacat tttaatcaat gggtggtccc cagatacgct
6301 ggtgccctaa acctcaacac aaaccttgcc ccttctgttg ctccggtatt tccaggggag
6361 cgcctgcttt tctttagatc atacgttccc ctcaagggtg gttatggaaa tccagccatt
6421 gattgcctat taccacaaga gtgggtgcaa cacttctatc aggaagctgc cccatcaatg
6481 agtgaggtgg cccttgtcag atacatcaac ccggatactg gtcgggcact gtttgaggcc
6541 aagctccaca gagctggttt catgacagtc tcgagcaaca ccagtgcccc ggtggttgtg
6601 cctgccaatg ggtacttcag atttgactct tgggttaatc aattctattc tctcgccccc
6661 atgggaactg gaaatgggcg tagaagggtt caatgatggc tggagctttt atggctggtc
6721 ttgcagggga cgtgctcagc aatgggctca gttcattaat taatgcaggt gctaatgcaa
6781 taaatcagag ggcagaattt gattttaatc agaaattaca gcaaaattct ttcaatcatg
6841 ataaggagat gttgcaggcc cagattcagg caactaagca gctgcaggca gacatgatgg
6901 ctataaaaca gggggtcctg accgctggcg gcttttcccc tgctgatgca gccagaggtg
6961 ctgtgaatgc gcccatgaca caagcgctgg attggaacgg cacaaggtat tgggcaccag
7021 gctctatgag gaccacatct tattctggaa agttcacatc aatcgcccca gtgaggcagg
7081 ccgacttcca gcacacccaa agccggcctt cgagtggctc ttctgtgtcc tcctttgcca
7141 ctcagtcttc aaggccaact ctgaccacaa ccactgggtc ctcacatggc gcagcctcat
7201 caaattcaac tcgcagcaca ggcctctccc aatcaacggt ctctagagct acatctagga
7261 ctagtgagtg ggttagagat caaaatagaa atttggaacc ctacatgcat ggtgccttac
7321 agacggcctt tgtcacccca ccttccagca gggcgtctga cgggacagtc tcaaccgtcc
7381 caaaaggtgt tttggactcc tggacacctg cgttcaacac ccgcaggcag ccgctctttg
7441 cacacctccg taagaggggg gagtcacatg cctagtgaaa aggtgaaaat ttgtttagaa
7501 taaattgatt ctacc
//