Typing tool
|
Complete norovirus genomes
LC209450 | GII.2 | ||
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GII.P16 |
ORF1: 1..5088 ORF2: 5069..6697 ORF3: 6697..7476LOCUS LC209450 7616 bp RNA linear VRL 14-DEC-2017 DEFINITION Norovirus Hu/GII/JP/2014/GII.P16_GII.2/Osaka-225 RNA, nearly complete genome. ACCESSION LC209450 VERSION LC209450.1 KEYWORDS . SOURCE Norovirus Hu/GII/JP/2014/GII.P16_GII.2/Osaka-225 ORGANISM Norovirus Hu/GII/JP/2014/GII.P16_GII.2/Osaka-225 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S., Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N., Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y., Katayama,K. and Kimura,H. TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015 JOURNAL Front Microbiol 8, 705 (2017) PUBMED 28487679 REMARK DOI:10.3389/fmicb.2017.00705 Publication Status: Online-Only REFERENCE 2 (bases 1 to 7616) AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H. TITLE Direct Submission JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City Institute for Public Health, Division of Virology; Tonomachi 3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan FEATURES Location/Qualifiers source 1..7616 /organism="Norovirus Hu/GII/JP/2014/GII.P16_GII.2/Osaka-225" /mol_type="genomic RNA" /strain="Hu/GII/JP/2014/GII.P16_GII.2/Osaka-225" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:1934276" /country="Japan: Osaka" /collection_date="2014" /note="genotype: GII.P16_GII.2" gene <1..5088 /gene="POL" CDS <1..5088 /gene="POL" /codon_start=1 /product="nonstructural polyprotein" /protein_id="BBB86968.1" /translation="MASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ SAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEPVIRFEVKSGISGLPDLTTVPQPDAT NTAFSVPPLSLRENREAKEPLTGAIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMA KVELAPLSLYWRVVYTPQYLISPDTLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWL SRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIGKIK PLNILNILATCDWTFAGIVESLILFAELFGVYWTPPDVSAMIAPLLGEYELQGPEDIA VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK EEANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMKTLDLEEEKARKLSTKS ASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVAK KVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPL TLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK RDFPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG LLHERMDEFELQGPTITTFNFDRNRVTAFRQLAAENKYGLVDTMRIGNQLKGVKTMEE LKQAIKNVSIKRCQIIYHGSTFDLESDGKGKVTVEKVKNTTVQTNNELAGALHHLRSA RIRYYVKCVQEAIYSILQIAGAAFVTTRIARRMNIQELWSKPPLDQSEPEVKEETPKL EDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI EEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSE IRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFI TSTHVIPPGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVAT VLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCP YIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGEA PKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKP PRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNGET FTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMV RCARAFGGLMDEMKAHCISLPIRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQ RAVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQWN SISHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLREYGL KPTRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPNHED PNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFR WMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5069..6697 /gene="VP1" CDS 5069..6697 /gene="VP1" /codon_start=1 /product="capsid protein VP1" /protein_id="BBB86969.1" /translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ TNIIDPWIRANFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLARMYNGYAGG MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSSFDPSEDIPAPLGIPDFQGRVFG VISQRDKHNTPGHNEPANRAHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT PVGLNDTDHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGTPA IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ" gene 6697..7476 /gene="VP2" CDS 6697..7476 /gene="VP2" /codon_start=1 /product="capsid protein VP2" /protein_id="BBB86970.1" /translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN SFNHDKEMLQAQVQATKQLQADMMAIKQGVLAAGGFSPADAARGAVNAPMTQALDWNG TRYWAPGSMRTTAYSGRFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT GSSHGTASSNSTRSTNLSQSTVSRATSRTVEWVRDQNRNLEPYMHGALQTAFVTPPSS RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQV" ORIGIN 1 atggcgtcta acgacgctac cgttgccgtt gcttgcaaca acaacaacga caaggaaaaa 61 tcttcgggtg aaggcttatt tacaaatatg tcttccaccc taaagaaagc cctcggggct 121 cggcctaaac agtcagcccc gagggacaac tcacaaaaac ccccaagacc accaacgccc 181 gagttggtta aaaggatacc ccctccccca cctaatggcg aagaagagcc agtcattagg 241 tttgaggtca agagtggaat ttctggcctg cccgatctca cgacagttcc tcaaccagat 301 gcgaccaata cggcattcag tgttccaccg ttgagcttaa gagagaacag ggaggccaag 361 gaaccgctaa ctggggcaat aatagagatg tgggatggag agatatacca ctatggtttg 421 tatgtggaga aaggcctagt cttgggtgtg cacaaaccac ccgcagctat aagcatggca 481 aaagtggaat tagcaccgct gtcgttatac tggcgtgtgg tgtacactcc ccaatacctc 541 atctcccctg acactctcaa gaggctcaac ggagaggcat tcccctacac cgcctttgat 601 aataactgtt atgccttttg ctgctgggtg ttagacctta atgactcatg gctcagcaga 661 agaatggtgc agaggacgac aggcttcttc agaccctacc aagagtggaa cagaaagccc 721 ctacccacca tggatgattc caaaattaag aaggtggcaa acatattcct atgttcatta 781 tctacactgt tcaccaggcc tataaaagac atcataggga aaatcaaacc actgaatatc 841 ttaaacattc tggcaacgtg tgattggacg ttcgccggaa tcgtagagtc tctaatatta 901 tttgctgaac tctttggagt ttactggaca cccccagatg tgtctgctat gatcgctccc 961 ttacttggcg agtacgagtt gcagggacca gaagacatcg ccgttgagct cgtacctgta 1021 gtgatggggg ggattggttt agtgctagga ttcaccaaag agaaaattgg caaaatgctg 1081 tcctcagcag cgtcaacgct cagggcttgc aaagaccttg gtgcctatgg tttagagata 1141 ctcaaattag tcatgaaatg gtttttccca aagaaagaag aagccaatga actagccatg 1201 gtgagagcaa tagaggatgc tgttctggat cttgaggcga tagaaaacaa tcacatgaca 1261 gccctgctga aagataaaga cagccttgca acctacatga aaacactgga cctagaggag 1321 gagaaagcca gaaaactgtc cacgaaatct gcatctcctg acatagttgg gacaatcaac 1381 gccctgctgg ctcgaatagc ggcggctaga tcactagtcc acagggccaa ggaggagcta 1441 tctagcagaa tcagaccagt tgtcgttatg atatctggca agccagggat aggcaagacc 1501 cacttggcca gggaggtggc gaaaaaagtg gcgtccactc tcacaggaga tcaaagagtt 1561 ggactcatac cgagaaacgg tgtggaccat tgggatgcat acaaaggtga aagggtcgtg 1621 ttgtgggatg actatggcat gagtaaccct attcatgatg cactgcgcat acaggaattg 1681 gccgacacat gccccctcac cttgaattgt gacagaattg aaaacaaggg aaaagttttt 1741 gatagtgatg ttataataat tacaacaaac cttgccaacc cagctcctct tgattatgtc 1801 aactttgagg cctgttccag gagaattgac ttcctggtgt acgccgaagc gccagaagtg 1861 gaaaaggcaa aacgggattt ccctggtcaa ccagatatgt ggaaggacgc cttcaaagcg 1921 gacttctcgc acatcaagtt gcaacttgcg ccccagggcg gctttgacaa gaatggcaac 1981 accccacatg ggaaaggagt gatgaagacc cttaccaccg gttctctgat cgcccgtgcg 2041 tcaggcttgc tgcatgagag gatggatgag tttgaacttc agggccccac aatcaccact 2101 ttcaactttg accggaacag agtcaccgct ttcagacaac tggctgctga gaacaaatat 2161 ggactggtgg ataccatgag gattggcaat caattgaaag gggtgaaaac catggaagaa 2221 ctcaagcaag ctatcaagaa tgtgtccatc aagaggtgcc agattatcta tcatggatcc 2281 acgtttgacc ttgagtctga tggcaagggt aaagttacag tggaaaaggt caaaaacacc 2341 actgttcaga ccaacaacga attggccgga gccctgcacc acctcagaag tgctcgaatc 2401 aggtattatg tcaaatgtgt gcaagaggca atctattcta tcctacaaat tgccggcgcc 2461 gcgttcgtca ccacacgcat tgcacgccgc atgaatatac aagagctttg gtcaaagcca 2521 ccactagacc aaagcgagcc agaggtcaag gaggagaccc ccaagttaga ggatgatgaa 2581 ttcatcatct cctccaagga cattaaggag gaagggaaga agggcaaaaa caaaactggc 2641 cgtggcaaga aacacactgc attctctagc aagggcttga gcgatgagga gtatgacgag 2701 tacaagagga taagagaaga gagaaatggg aagtattcta tagaggagta tcttcaagac 2761 agggacaggt actatgaaga actcgccatc gccaaggcca cggaagaaga cttttgtgag 2821 gaggaagaga taaaaatccg ccagcgaatc tttcgtccca ctagaaaaca aaggaaggaa 2881 gaaagggcca cgttagggct agtgactggt tcggaaatca gaaaaagaaa ccctgatgac 2941 ttcaaaccta aagggaaatt gtgggccgac gacaacagaa gtgttgacta caatgaaaaa 3001 ctggactttg aggccccccc aagcatatgg tctaggatcg taagctttgg ttcaggttgg 3061 ggcttctggg tgtcaccaag cctgtttata acatcaactc atgtgatccc tccgggtata 3121 acagaggcat ttggagtccc tatcaaacag attcaagtcc acaaatcggg cgaattttgt 3181 cggttcagat tcccaaaacc aattagacca gatgtaacag gaatgatcct ggaagaaggt 3241 gcgccagagg gcaccgtagc aaccgtactc atcaagcgcc ccactggaga actcatgccc 3301 ctcgcagcta gaatgggaac acacgcaacc atgaaaattc agggccgcat ggttggtggg 3361 cagatgggca tgttgctcac tggttcaaat gctaagggta tggatctggg gacaactccc 3421 ggtgactgtg gctgcccgta tatttacaaa aggggcaatg actacatagt cattggagtg 3481 cacacagcag cagcccgagg tggtaatact gtcatctgtg ccacacaggg aagtgagggt 3541 gaagcgaccc tcgagggtgg agacgacaaa ggaacatact gtggggcacc catcctgggc 3601 cctggagagg cgccaaagtt aagcacaaaa accaaatttt ggaggtcatc aaacacgccc 3661 ctcccaccag ggacatatga gcctgcctac cttggcggtc gtgatccgcg tgtaaagggt 3721 gggccttccc tacaacaagt catgagagat cagttaaagc ccttcaccga gcccaggggt 3781 aaacccccga gacctagtgt gctggaggca gccaaacaga ccatcatcaa cgttctcgag 3841 caaactttgg atcccccaca aaaatggacg tacgcacaag cgtgcgcttc acttgataaa 3901 accacctcta gtggacaccc ccatcacgct cgaaagaatg aattctggaa cggtgagacc 3961 tttaccggta agttggcaga ccaagcatca aaagcaaact taatgtttga ggaagggaaa 4021 catatgacac cagtgtacac agcagccctt aaggatgagt tggttaaaac cgacaaaatc 4081 tatgggaaga tcaagaaacg cctgctttgg ggctctgatt tatccaccat ggtccgatgt 4141 gctagggcct ttggtggact catggacgag atgaaggcgc actgcatatc gctcccaatc 4201 cgagttggca tgaatatgaa tgaggatggc ccaataatat ttgagaagca ctccagatat 4261 aaatatcact atgatgcaga ctactctcgc tgggactcaa cacaacagag ggctgttcta 4321 gcagcggcct tggaaataat ggtcagattc tctgcagaac cgcaactggc ccaaacagtt 4381 gctgaggatc tgctggcccc cagtgtagta gatgtcggag acttcaaaat ttcaataaat 4441 gagggactcc cttctggtgt accatgcact tcccagtgga attccatctc acactggttg 4501 ctaactctct gtgctttgtc tgaagtcacc aacctgtctc ctgacatcgt gcaggcaaat 4561 tctatgttct cattttacgg tgatgacgag atcgtcagca ccgatataaa attggaccct 4621 gaaaagttaa ccaccaaatt gagggagtat ggtctaaaac caactcgccc agacaaaacc 4681 gaggggccct tgatcatcag tgaggatttg gacggtctca ccttcctccg gaggacggtt 4741 tctcgtgacc cagctggttg gtttggaaag ttagatcaaa gctcaatact aaggcagatg 4801 tattggacca gaggaccaaa ccatgaagac cccaatgaga caatgatacc ccactctcaa 4861 agacccatac agctcatggc actgcttggt gaggcctccc ttcacggacc ctctttctac 4921 agcaagatta gtaaattggt cataactgaa ctcaaagaag gtgggatgga cttttacgtg 4981 ccaagacagg aacccatgtt cagatggatg aggttttctg atttgagcac gtgggagggc 5041 gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg ccgctccatc 5101 tactgatggt gcagccggcc tcgtgccaga aagtaataat gaggtcatgg ctcttgaacc 5161 cgtggctggt gccgccttgg cagccccagt caccggtcaa acaaatataa tagacccttg 5221 gattagagca aattttgtcc aggcccccaa tggtgaattt acagtctctc cccgtaactc 5281 ccctggtgaa gtgctattga atctagagtt gggtccagaa ttaaatcctt atctggcaca 5341 tttagcaaga atgtataacg ggtatgccgg tgggatggag gtgcaggtca tgttggctgg 5401 gaatgcgttc acagccggca agttagtctt cgccgctgtg ccaccccact tcccggtcga 5461 aaaccttagc ccacagcaaa ttaccatgtt ccctcatgtg attatagatg tcaggacttt 5521 ggaacctgtt ttattaccac tccctgatgt taggaataac ttcttccatt acaatcagaa 5581 agatgacccc aagatgagaa ttgtggctat gctttacacc cccctcaggt ctaatggttc 5641 aggcgatgat gtgtttacag tttcctgcag ggtgttgact agaccctccc ctgattttga 5701 tttcacatat ctggtgccac caacagtgga atctaaaaca aaaccattca ctctcccaat 5761 cctcacgctt ggggaacttt ctaattctag attcccagtg tccatagacc agatgtacac 5821 cagccccaat gaagtcatat cagtgcagtg ccaaaatggc aggtgcacac tggatgggga 5881 actccaagga acaacacaac tccaagtcag tggcatttgt gctttcaagg gagaagtgac 5941 tgcccacttg catgacaatg atcacctgta taatgtcacc atcacaaact tgaatgggtc 6001 ctcttttgac ccctctgagg acatccccgc ccctctgggc atacctgact ttcaggggag 6061 ggtctttggt gtcatctccc aaagagacaa acacaacacc cctggacaca atgaaccagc 6121 aaacagggca cacgatgccg tggtccctac ttatacagca cagtataccc caaaattggg 6181 tcagattcaa attggcacat ggcagactga cgatctcaca gtcaaccaac cagtcaaatt 6241 caccccagtt ggacttaatg atactgacca ttttaaccaa tgggtggtcc ccaggtatgc 6301 tggtgcccta aacctaaaca caaaccttgc cccttctgtt gctccagtat ttccagggga 6361 gcgtctgctc tttttcagat catacattcc cctcaagggc ggttatggaa ctccagccat 6421 cgattgccta ctaccacaag agtgggtgca acatttctat caggaagcag ccccttcgat 6481 gagtgaggtg gcccttgtca gatacatcaa cccggatact ggtcgggcac tgttcgaggc 6541 caaactccac agagctggtt tcatgacagt ctcaagcaac accagtgccc cggtggttgt 6601 gcctgccaac ggatacttca ggtttgattc ttgggtgaac caattctatt ctctcgcccc 6661 catgggaact ggaaatgggc gtagaaggat ccaataatgg ctggagcttt tgtagctggt 6721 cttgcagggg acgtgctcag caatgggctc agttcattaa ttaatgcagg tgctaatgca 6781 ataaatcaga gggcagaatt tgattttaat cagaaattac agcaaaattc tttcaatcat 6841 gataaggaga tgttgcaggc ccaggtccag gcaactaagc agctgcaggc agatatgatg 6901 gctataaaac agggggtcct ggccgctggc ggcttttccc ctgctgatgc agccagaggt 6961 gctgtgaacg cgcccatgac acaggcgctg gattggaacg gcacaaggta ttgggcacca 7021 ggctccatga ggactacagc ctactctggg agattcacat caaccgcccc agtgaggcag 7081 gctgatttcc agcacaccca aagccggccc tcgagtggtt cttctgtgtc ctcctttgct 7141 actcagtctt caaggccgac cctgaccaca accactgggt cctcacatgg cacagcctca 7201 tcaaattcga ctcgcagcac aaacctctcc caatcaacgg tctccagggc tacatctagg 7261 actgttgaat gggtcagaga ccaaaacaga aatttggaac cttatatgca tggtgcctta 7321 cagacggcct ttgtcacccc accttccagc agggcgtctg atgggacggt ctcaaccgtt 7381 ccaaaaggtg ttttggactc ctggacacct gcgtttaaca cccgcaggca gccgcttttc 7441 gcacacctcc gtaagagggg ggagtcacag gtttagtgaa aaggtgaaaa tttatttaaa 7501 atgaattgat tttacctttt aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 7561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa //