Typing tool
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Typing tool
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Complete norovirus genomes
| LC209448 | GII.2 | |
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| GII.P16 |
ORF1: 1..5084
ORF2: 5065..6693
ORF3: 6693..7472
LOCUS LC209448 7512 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Osaka-9 RNA, nearly complete
genome.
ACCESSION LC209448
VERSION LC209448.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Osaka-9
ORGANISM Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Osaka-9
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7512)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7512
/organism="Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Osaka-9"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2011/GII.P16_GII.2/Osaka-9"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934274"
/country="Japan: Osaka"
/collection_date="2011"
/note="genotype: GII.P16_GII.2"
gene <1..5084
/gene="POL"
CDS <1..5084
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BBB86962.1"
/translation="NDANVAVAYNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQSAP
RDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQPDVANT
AFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMAKV
ELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLNR
RMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPL
NILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLEDYELQGPEDLAVE
LVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE
ANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSAS
PDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARKV
ASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTL
NCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD
FPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL
HERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKTMEELK
QAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKHARI
RYYVRCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEAPKSED
DEFIISSKDIKEEGKKGKNKTGRGRKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVTGSEIR
KRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITS
THVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVL
IKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYI
YKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPK
LSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPR
PSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGETFT
GKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLSTMIRC
ARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRA
VLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKEYGLKP
TRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPN
ETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5065..6693
/gene="VP1"
CDS 5065..6693
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB86963.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALESVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLSLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDVPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYVPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6693..7472
/gene="VP2"
CDS 6693..7472
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB86964.1"
/translation="MAGAFMAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRCWAPGSMRTTSYSGKFTSIAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTGLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESHA"
ORIGIN
1 ctaacgacgc taacgttgcc gttgcttaca acaacaacaa cgacaaggaa aaatcttcag
61 gtgaaggctt attcacaaat atgtcttcca ccttaaagaa agccctcggg gcccggccca
121 aacagtccgc cccgagggac aactcacaaa aacccccaag accaccaact cccgagttgg
181 ttaagaggat accccctccc ccacctaatg gtgaagaaga agagccagtc attaggtatg
241 aggttaagag tgggatctct ggcctgcccg agctcacaac agtcccccaa ccggatgtgg
301 ccaacacggc attcagtgtc ccaccgctga gcttgagaga aaacagggag gccaaggaac
361 cgctgacagg ggcaatatta gagatgtggg atggagagat ataccactat ggcctgtacg
421 tggagaaagg cttagtgttg ggtgtgcaca aaccacctgc agctataagc atggcaaaag
481 tggagctgac gccgttgtca ttgtactggc gtgtggtcta caccccccaa tacctcatct
541 cccctgaaac tctcaggagg ctcaacggag aggcattccc ttacaccgcc tttgacaaca
601 attgctatgc cttttgctgc tgggtattag acctcaatga ctcatggctt aacaggagga
661 tggtacaaag aacaacaggc ttcttcagac cttaccaaga gtggaacaga aaacccctgc
721 ctactatgga tgactccaaa atcaagaagg tggcaaacat attcctgtgt tcattgtcca
781 cgttgttcac cagacctata aaagacctca taggaaaaat taaaccatta aacatcttga
841 acatcctggc aacgtgtgac tggacattcg ccggaatagt ggagtctctg atattacttg
901 ctgaactctt tggagttttc tggacacccc cagatgtgtc tgctatgatc gctcccttac
961 ttgaagacta cgagttgcaa gggccagaag acctcgccgt tgagctcgta cctgtggtaa
1021 tgggagggat tggtttggtg ttgggattca ccaaagagaa aattggcaaa atgttgtcct
1081 cagcagcatc aacgctcagg gcttgtaagg atcttggtgc ctatggctta gagatactca
1141 aattggtcat gaagtggttc ttcccaaaga aagaagaggc caatgagcta gccatggtga
1201 gagctataga ggatgctgtg ttggatcttg aggcaataga aaataatcac atgacaactc
1261 tgttgaaaga caaagacagc ctagcaacct acatgaaaac actagacatg gaagaggaga
1321 aagccagaag attgtccaca aaatctgcat cccctgacat agttgggacg atcaacgccc
1381 tgctggctcg aatagcagcg gctaggtcat tagtccacag ggccaaggag gagttatcta
1441 gcaggataag accagtagtt gttatgatat ctggcaaacc agggataggt aaaactcatt
1501 tggccaggga ggtggcaaga aaggtggcat ccactctcac aggggatcaa agagtcgggc
1561 tcataccgag aaacggtgtg gaccactggg atgcatacaa aggtgagaga gtcgtgctgt
1621 gggacgacta tggcatgagc aaccccattc atgatgcttt gcgcatacaa gaattggctg
1681 atacgtgtcc ccttacctta aattgcgaca gaattgaaaa taagggaaaa gtttttgaca
1741 gtgaagtcat aataattaca acaaaccttg ccaatccagc tccacttgat tatgtcaact
1801 ttgaggcctg ttccaggaga attgacttcc tggtgtacgc cgaggcacca gaagtagaaa
1861 aggcaaaacg agactttcct ggtcaaccag atatgtggaa ggacgccttc aagtcggact
1921 tttcacatat caagttgcaa cttgcacctc agggcggctt tgacaagaat ggtaacaccc
1981 cacatgggaa aggagtgatg aagaccctca ccaccggttc cctgattgcc cgtgcatcag
2041 gcttactgca tgagaggatg gatgaatttg aactccaagg ccccacagtt accaccttca
2101 atttcgaccg gaacagaatc accgcattca gacaattggc cgcagaaaac aagtatgggt
2161 tggtggacac catgagagtt ggcaatcaat taaaaggggt gaaaaccatg gaagaactca
2221 aacaagcaat caagaatgtg atcatcaaga ggtgccggat catctacggt ggctccacgt
2281 atgaccttga atctgatggc aagggcaaag ttttggtgga aaaggtcaag aacacctcta
2341 tacagaccaa caacgagttg gctggagccc tgcatcacct caaacatgcc cgaatcaggt
2401 attatgtcag atgtgtgcaa gaagcagttt actctatcat acaaattgcc ggcgctgcgt
2461 ttgtcaccac acgcattgca cgccgcatga acatacaaga gctttggtcg aagccaccat
2521 tagaccaaaa tgaatcagag gctaaggaag aggcccccaa gtcagaagat gacgagttca
2581 tcatatcttc taaggacatc aaggaggaag gaaagaaggg caaaaacaaa actggccgtg
2641 gcaggaaaca cactgcattc tctagcaagg gcttgagcga tgaggagtat gacgagtaca
2701 agaggataag agaagagaga aatgggaagt actctataga ggagtatctt caagacagag
2761 acaggtacta tgaggaactc gccatcgcca aggccacgga agaagacttc tgtgaggagg
2821 aggaggtcaa aatccgtcag aggatcttcc gtcccaccag gaaacaaagg aaggaagaga
2881 gggctacact aggactagta actggttcag aaatcagaaa aagaaaccct gatgacttca
2941 aacctaaagg gaaactgtgg gccgatgaca acagaagtgt tgactacaat gagaaactgg
3001 actttgaggc ccccccaagc atatggtcta ggattgtgag ttttggttct ggttggggct
3061 tctgggtatc accaagcctg ttcataacat caactcatgt aatccctgca ggcataacag
3121 aggcatttgg agtccccatc aaacaaatcc aggtccacaa atcaggtgaa ttttgccggt
3181 tcagattccc aaaaccaatt agaccagatg tgacaggaat gatattggaa gaaggtgcgc
3241 ctgagggcac cgtggcaacc gtactcatca aacgccctac cggagagctc atgccccttg
3301 cagccagaat ggggacacac gcaaccatga agattcaagg ccgcatggtt ggcggacaga
3361 tgggtatgtt gctcactggt tcaaatgcta aaggaatgga tttgggaaca actcctggtg
3421 attgtggctg tccctacatc tacaaaaggg gcaatgacta tatagtcatt ggggtgcaca
3481 cagcagcagc ccgtggtgga aacaccgtca tctgtgccac acagggaagt gagggtgagg
3541 caactcttga gggtggagat gacaaaggaa catactgtgg agcacccatt ctaggccccg
3601 ggggggcacc aaaattgagc accaaaacca aattttggag gtcatcgaac acgcctcttc
3661 caccagggac atatgagcct gcctacctcg gtggccgtga cccgcgtgtt aagggtgggc
3721 cctccttgca gcaggtaatg agagaccagt tgaaaccatt cactgaaccc aggggtaaac
3781 ctccaagacc aagtgtgttg gaggcagcca aacaaaccat catcaatgtc ctcgaacaaa
3841 ccctggaccc tccacaaaaa tggacatacg cacaggcgtg tgcttcactt gacaaaacca
3901 cctccagcgg gcatccccac cacgtccgaa agaatgaatt ctggaatggt gagaccttca
3961 ctggtaaatt ggcagaccaa gcatcaaaag caaatctgat gtttgaggaa gggaaacaca
4021 tgacaccagt gtatacagca gccctcaagg acgagctggt caagactgac aaagtctatg
4081 gaaagatcaa gaagagactg ctctggggct ctgacttgtc caccatgatc cggtgcgcca
4141 ggtcctttgg tgggcttatg gatgagatga aggcacactg catatcactc ccagtccgag
4201 ttggcatgaa catgaatgaa gatggtccaa taatatttga gaagcactcc agatacaagt
4261 accactatga tgcagactac tcccgctggg attcaacaca acagagggca gtactagcag
4321 cagccttgga aatcatggtc aggttctctg cagagccaca attggcacag atagtcgctg
4381 aggatctgct ggcccccagt gtggtagatg taggagactt taaaatttca ataaatgagg
4441 ggctcccctc tggtgtacca tgcacttctc aatggaattc catcgcacac tggctgctaa
4501 ccctctgtgc cttgtctgaa gtcaccaaac tgtcccctga cattgtacag gcaaattcca
4561 tgttctcatt ttacggtgat gacgagattg tcagcaccga tataaaattg gaccctgaaa
4621 agttaaccac caaattgaag gagtatggcc tgaaaccaac tcgcccagac aaaaccgagg
4681 gacccctgat catcagtgag gatttgaatg gactcacttt cctccggagg acggtgactc
4741 gtgacccagc tggctggttt ggaaaattgg accaaagctc aatattgagg cagatgtact
4801 ggactagagg accaaatcat gaagacccca atgagacaat gataccccac tctcaaagac
4861 ccatacagct catggcactg cttggtgagg cctcccttca cggaccctct ttctacagca
4921 aaatcagtaa attggtcata actgaactca aagaaggtgg gatggacttt tacgtgccaa
4981 gacaggaacc catgttcagg tggatgaggt tttctgactt gagcacgtgg gagggcgatc
5041 gcaatctggc tcccaatttt gtgaatgaag atggcgtcga atgacgccgc tccatctact
5101 gatggtgcag ccggcctcgt gccagaaagt aacaatgagg tcatggctct tgaatccgtg
5161 gctggtgccg ccttggcagc accggtcacc ggtcaaacaa atattataga cccttggatt
5221 agagcaaatt ttgtccaggc ccccaatggc gaatttacag tctctccccg taatgcccct
5281 ggtgaagtgc tattaagtct agaattgggt ccagaattaa atccttatct ggcacattta
5341 gcaagaatgt acaacgggta tgccggtggg atggaggtgc aggtcatgtt ggctgggaat
5401 gcgttcacag ccggcaagtt ggtcttcgcc gctgtgccac ctcacttccc ggttgaaaac
5461 cttagcccac agcaaattac catgttccct catgtgatta tagatgtaag gaccttggaa
5521 cctgttttat taccactccc tgatgttagg aataatttct tccattataa tcagaaagat
5581 gatcccaaaa tgagaattgt ggctatgctt tatacccccc ttagatctaa tggttcaggt
5641 gatgatgtgt tcacagtttc ctgcagggtg ttgaccagac cctcccctga tttcgatttc
5701 acatatctgg tgccaccaac agtggaatct aaaacaaaac cattcaccct cccaatcctc
5761 acacttgggg aactttccaa ttctaggttc ccagtgtcca tagaccagat gtacaccagc
5821 cctaatgaag ttatatcagt gcagtgtcaa aatggtaggt gcacattgga cggggaactt
5881 caagggacaa cacaactcca agtcagtggc atttgtgctt tcaaggggga agtgaccgcc
5941 catttgcatg acaatgatca cctatacaat gtcaccatca caaacttgaa tgggtcccct
6001 tttgacccct ccgaggacgt tcctgcccct ctgggcgtgc ctgatttcca gggaagggtc
6061 tttggtatta tctcccaaag agacaaacat aatagccctg ggcataatga accagcaaac
6121 aggggacacg acgctgtggt ccctacttac acagcacagt acactccaaa attgggtcag
6181 attcaaattg gcacatggca gaccgatgat cttacagtca accaaccagt caaattcacc
6241 ccagttggac tcaatgacac tgaacatttt aatcaatggg tggtccccag atacgctggt
6301 gccctaaacc tcaacacaaa ccttgcccct tctgttgctc cggtatttcc aggggagcgc
6361 ctgcttttct tcagatcata cgttcccctc aagggtggtt atggaaatcc agccattgat
6421 tgcctattac cacaagagtg ggtgcaacac ttctatcagg aagctgcccc atcaatgagt
6481 gaggtggccc ttgtcagata catcaacccg gatactggtc gggcactgtt tgaggccaag
6541 ctccacagag ctggtttcat gacagtctcg agcaacacca gtgccccggt ggttgtgcct
6601 gccaatgggt acttcagatt tgactcttgg gttaatcaat tctattctct cgcccccatg
6661 ggaactggaa atgggcgtag aagggttcaa taatggctgg agcttttatg gctggtcttg
6721 caggggacgt gctcagcaat gggctcagtt cattaattaa tgcaggtgct aatgcaataa
6781 atcagagggc agaatttgat tttaatcaga aattacagca aaattctttc aatcatgata
6841 aggagatgtt gcaggcccag attcaggcaa ctaagcagct gcaggcagac atgatggcta
6901 taaaacaggg ggtcctgacc gctggcggct tttcccctgc tgatgcagcc agaggtgctg
6961 tgaatgcgcc catgacacag gcgctggatt ggaacggcac aaggtgttgg gcaccaggct
7021 ctatgaggac cacatcttat tctggaaaat tcacatcaat cgccccagtg aggcaggccg
7081 acttccagca cacccaaagc cggccttcga gtggctcttc tgtgtcctcc tttgccactc
7141 agtcttcaag gccaactctg accacaacca ctgggtcctc acatggcaca gcctcatcaa
7201 attcaactcg cagcacaggc ctctcccaat caacggtctc tagagctaca tctaggacta
7261 gtgagtgggt tagagatcaa aatagaaatc tggaacccta catgcatggt gccttacaga
7321 cggcctttgt caccccacct tccagcaggg cgtctgacgg gacagtctca accgtcccaa
7381 aaggtgtttt ggactcctgg acacctgcgt tcaacacccg caggcagccg ctctttgcac
7441 acctccgtaa gaggggggag tcacatgcct agtgaaaagg tgaaaatttg tttagaataa
7501 attgattcta cc
//