Typing tool
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Typing tool
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Complete norovirus genomes
| LC209447 | GII.2 | |
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| GII.P16 |
ORF1: 1..5089
ORF2: 5070..6698
ORF3: 6698..7477
LOCUS LC209447 7517 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Saitama-51 RNA, nearly
complete genome.
ACCESSION LC209447
VERSION LC209447.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Saitama-51
ORGANISM Norovirus Hu/GII/JP/2011/GII.P16_GII.2/Saitama-51
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7517)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7517
/organism="Norovirus
Hu/GII/JP/2011/GII.P16_GII.2/Saitama-51"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2011/GII.P16_GII.2/Saitama-51"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934273"
/country="Japan: Saitama"
/collection_date="2011"
/note="genotype: GII.P16_GII.2"
gene <1..5089
/gene="POL"
CDS <1..5089
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BBB86959.1"
/translation="ASNDANVAVAYNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQS
APRDNSQKPPRPPTPELVKRIPPPPPNGKEEEPVIRYEVKSGISGLPELTTVPQPDVA
NTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMA
KVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWL
NRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIK
PLNILNILATCDWTFAGIVESLILFAELFGVFWTPPDVSAMIAPLLEDYELQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVAR
KVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPL
TLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKTMEE
LKQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKHA
RIRYYVRCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEAPKS
EDDEFIISSKDIKEEGKKGKNKTGRGRKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVTGSE
IRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFI
TSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVAT
VLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCP
YIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGA
PKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKP
PRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGET
FTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLSTMI
RCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQ
RAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKEYGL
KPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHED
PNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5070..6698
/gene="VP1"
CDS 5070..6698
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB86960.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLSLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDVPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYVPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6698..7477
/gene="VP2"
CDS 6698..7477
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB86961.1"
/translation="MAGAFMAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGKFTSIAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTGLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESHA"
ORIGIN
1 ggcgtctaac gacgctaacg ttgccgttgc ttacaacaac aacaacgaca aggaaaaatc
61 ttcaggtgaa ggcttattca caaatatgtc ttccacctta aagaaagccc tcggggcccg
121 gcccaaacag tccgccccga gggacaactc acaaaagccc ccaagaccac caactcccga
181 gttggttaag aggatacccc ctcccccacc taatggtaaa gaagaagagc cagtcattag
241 gtatgaggtt aagagtggga tctctggcct gcccgagctc acaacagtcc cccaaccgga
301 tgtggccaac acggcattca gtgtcccacc gctgagcttg agagaaaaca gggaggccaa
361 ggaaccgctg acaggggcaa tattagagat gtgggatgga gagatatacc actatggcct
421 gtacgtggag aaaggcttag tgttgggtgt gcacaaacca cctgcagcta taagcatggc
481 aaaagtggag ctgacgccgt tgtcattgta ctggcgtgtg gtctacaccc cccaatacct
541 catctcccct gaaactctca ggagactcaa cggagaggca ttcccttaca ccgcctttga
601 caacaattgc tatgcctttt gctgctgggt attagacctc aatgactcat ggcttaacag
661 gaggatggta caaagaacaa caggcttctt cagaccttac caagagtgga acagaaaacc
721 cctgcctact atggatgact ccaaaatcaa gaaggtggca aacatattcc tgtgttcatt
781 gtccacgttg ttcaccagac ctataaaaga cctcatagga aaaattaaac cattaaacat
841 cttgaacatc ctggcaacgt gtgactggac attcgccgga atagtggagt ctctgatatt
901 atttgctgaa ctctttggag ttttctggac acccccagat gtgtctgcta tgatcgctcc
961 cttacttgaa gactacgagt tgcaagggcc agaagacctc gccgttgagc tcgtacctgt
1021 ggtaatggga gggattggtt tggtgttggg attcaccaaa gagaaaattg gcaaaatgtt
1081 gtcctcagca gcatcaacgc tcagggcttg taaggatctt ggtgcctatg gcttagagat
1141 actcaaattg gtcatgaagt ggttcttccc aaagaaagaa gaggccaatg agctagccat
1201 ggtgagagct atagaggatg ctgtgttgga tcttgaggca atagaaaata atcacatgac
1261 aactctgttg aaagacaaag acagcctagc aacctacatg aaaacactag acatggaaga
1321 ggagaaagcc agaagattgt ccacaaaatc tgcatcccct gacatagttg ggacgatcaa
1381 cgccctgctg gctcgaatag cagcggctag gtcattagtc cacagggcca aggaggagtt
1441 atctagcagg ataagaccag tagttgttat gatatctggc aaaccaggga taggtaaaac
1501 tcatttggcc agggaggtgg caagaaaggt ggcatccact ctcacagggg atcaaagagt
1561 cgggctcata ccgagaaacg gtgtggacca ctgggatgca tacaaaggtg agagagtcgt
1621 gctgtgggac gactatggca tgagcaaccc cattcatgat gctttgcgca tacaagaatt
1681 ggctgatacg tgtcccctta ccttaaattg cgacagaatt gaaaataagg gaaaagtttt
1741 tgacagtgaa gtcataataa ttacaacaaa ccttgccaat ccagctccac ttgattatgt
1801 caactttgag gcctgttcca ggagaattga cttcctggtg tacgccgagg caccagaagt
1861 agaaaaggca aaacgagact ttcctggtca accagatatg tggaaggacg ccttcaagtc
1921 ggacttttca catatcaagt tgcaacttgc acctcagggc ggctttgaca agaatggtaa
1981 caccccacat gggaaaggag tgatgaagac cctcaccacc ggttccctga ttgcccgtgc
2041 atcaggctta ctgcatgaga ggatggatga atttgaactc caaggcccca cagttaccac
2101 cttcaatttc gaccggaaca gaatcaccgc attcagacaa ttggccgcag aaaataagta
2161 tgggttggtg gacaccatga gagttggcaa tcaattaaaa ggggtgaaaa ccatggaaga
2221 actcaaacaa gcaatcaaga atgtgatcat caagaggtgc cggatcatct acggtggctc
2281 cacgtatgac cttgaatctg atggcaaggg caaagttttg gtggaaaagg tcaagaacac
2341 ctctatacag accaacaacg agttggctgg agccctgcat cacctcaaac atgcccgaat
2401 caggtattat gtcagatgtg tgcaagaagc agtttactct atcatacaaa ttgccggcgc
2461 tgcgtttgtc accacacgca ttgcacgccg catgaacata caagagcttt ggtcgaagcc
2521 accattagac caaaatgaat cagaggctaa ggaagaggcc cccaagtcag aagatgacga
2581 gttcatcata tcttctaagg acatcaagga ggaaggaaag aagggcaaaa acaaaactgg
2641 ccgtggcagg aaacacactg cattctctag caagggcttg agcgatgagg agtatgacga
2701 gtacaagagg ataagagaag agagaaatgg gaagtactct atagaggagt atcttcaaga
2761 cagagacagg tactatgagg aactcgccat cgccaaggcc acggaagaag acttctgtga
2821 ggaggaggag gtcaaaatcc gtcagaggat cttccgtccc accaggaaac aaaggaagga
2881 agagagggct acactaggac tggtaactgg ttcagaaatc agaaaaagaa accctgatga
2941 cttcaaacct aaagggaaac tgtgggccga tgacaacaga agtgttgact acaatgagaa
3001 actggacttt gaggcccccc caagcatatg gtctaggatt gtgagttttg gttctggttg
3061 gggcttctgg gtatcaccaa gcctgttcat aacatcaact catgtaatcc ctgcaggcat
3121 aacagaggca tttggagtcc ccatcaaaca aatccaggtc cacaaatcag gtgaattttg
3181 ccggttcaga ttcccaaagc caattagacc agatgtgaca ggaatgatat tggaagaagg
3241 tgcgcctgag ggcaccgtgg caaccgtact catcaaacgc cctaccggag agctcatgcc
3301 ccttgcagcc agaatgggga cacacgcaac catgaagatt caaggccgca tggttggcgg
3361 acagatgggt atgttactca ctggttcaaa tgctaaagga atggatttgg gaacaactcc
3421 tggtgattgt ggctgtccct acatctacaa aaggggcaat gactatatag tcattggggt
3481 gcacacagca gcagcccgtg gtggaaacac cgtcatctgt gccacacagg gaagtgaggg
3541 tgaggcaact cttgagggtg gagatgacaa aggaacatac tgtggagcac ccattctagg
3601 ccccgggggg gcaccaaaat tgagcaccaa aaccaaattt tggaggtcat cgaacacgcc
3661 tcttccacca gggacatatg agcctgccta cctcggtggc cgtgacccgc gtgttaaggg
3721 tgggccctcc ttgcagcagg taatgagaga ccagttgaaa ccattcactg aacccagggg
3781 taaacctcca agaccaagtg tgttggaggc agccaaacaa accatcatca atgtcctcga
3841 acaaaccctg gaccctccac aaaaatggac atacgcacag gcgtgtgctt cacttgacaa
3901 aaccacctcc agcgggcatc cccaccacgt ccgaaagaat gaattctgga atggtgagac
3961 cttcactggt aaattggcag accaagcatc aaaagcaaat ctgatgtttg aggaagggaa
4021 acacatgaca ccagtgtata cagcagccct caaggacgag ctggtcaaga ctgacaaagt
4081 ctatggaaag atcaagaaga gactgctctg gggctctgac ttgtccacca tgatccggtg
4141 cgccaggtcc tttggtgggc ttatggatga gatgaaggca cactgcatat cactcccagt
4201 ccgagttggc atgaacatga atgaagatgg tccaataata tttgagaagc actccagata
4261 caagtaccac tatgatgcag actactcccg ctgggattca acacaacaga gggcagtact
4321 agcagcagcc ttggaaatca tggtcaggtt ctctgcagag ccacaattgg cacagatagt
4381 cgctgaggat ctgctggccc ccagtgtggt agatgtagga gactttaaaa tttcaataaa
4441 tgaggggctc ccctctggtg taccatgcac ttctcaatgg aattccatcg cacactggct
4501 gctaaccctc tgtgccttgt ctgaagtcac caaactgtcc cctgacattg tacaggcaaa
4561 ttccatgttc tcattttacg gtgatgacga gattgtcagc accgatataa aattggaccc
4621 tgaaaagtta accaccaaat tgaaggagta tggcctgaaa ccaactcgcc cagacaaaac
4681 cgagggaccc ctgatcatca gtgaggattt gaatggactc actttcctcc ggaggacggt
4741 gactcgtgac ccagctggct ggtttggaaa attggaccaa agctcaatat tgaggcagat
4801 gtactggact agaggaccaa atcatgaaga ccccaatgag acaatgatac cccactctca
4861 aagacccata cagctcatgg cactgcttgg tgaggcctcc cttcacggac cctctttcta
4921 cagcaaaatc agtaaattgg tcataactga actcaaagaa ggtgggatgg acttttacgt
4981 gccaagacag gaacccatgt tcaggtggat gaggttttct gacttgagca cgtgggaggg
5041 cgatcgcaat ctggctccca attttgtgaa tgaagatggc gtcgaatgac gccgctccat
5101 ctactgatgg tgcagccggc ctcgtgccag aaagtaacaa tgaggtcatg gctcttgaac
5161 ccgtggctgg tgccgccttg gcagcaccgg tcaccggtca aacaaatatt atagaccctt
5221 ggattagagc aaattttgtc caggccccca atggcgaatt tacagtctct ccccgtaatg
5281 cccctggtga agtgctatta agtctagaat tgggtccaga attaaatcct tatctggcac
5341 atttagcaag aatgtacaac gggtatgccg gtgggatgga ggtgcaggtc atgttggctg
5401 ggaatgcgtt cacagccggc aagttggtct tcgccgctgt gccacctcac ttcccggttg
5461 aaaaccttag cccacagcaa attaccatgt tccctcatgt gattatagat gtaaggacct
5521 tggaacctgt tttattacca ctccctgatg ttaggaataa tttcttccat tataatcaga
5581 aagatgatcc caaaatgaga attgtggcta tgctttatac cccccttaga tctaatggtt
5641 caggtgatga tgtgttcaca gtttcctgca gggtgttgac cagaccctcc cctgatttcg
5701 atttcacata tctggtgcca ccaacagtgg aatctaaaac aaaaccattc accctcccaa
5761 tcctcacact tggggaactt tccaattcta ggttcccagt gtccatagac cagatgtaca
5821 ccagccctaa tgaagttata tcagtgcagt gtcaaaatgg taggtgcaca ttggacgggg
5881 aacttcaagg gacaacacaa ctccaagtca gtggcatttg tgctttcaag ggggaagtga
5941 ccgcccattt gcatgacaat gatcacctat acaatgtcac catcacaaac ttgaatgggt
6001 ccccttttga cccctccgag gacgttcctg cccctctggg cgtgcctgat ttccagggaa
6061 gggtctttgg tattatctcc caaagagaca aacataatag ccctgggcat aatgaaccag
6121 caaacagggg acacgacgct gtggtcccta cttacacagc acagtacact ccaaaattgg
6181 gtcagattca aattggcaca tggcagaccg atgatcttac agtcaaccaa ccagtcaaat
6241 tcaccccagt tggactcaat gacactgaac attttaatca gtgggtggtc cccagatacg
6301 ctggtgccct aaacctcaac acaaaccttg ccccttctgt tgctccggta tttccagggg
6361 agcgcctgct tttcttcaga tcatacgttc ccctcaaggg tggttatgga aatccagcca
6421 ttgattgctt attaccacaa gagtgggtgc aacacttcta tcaggaagct gccccatcaa
6481 tgagtgaggt ggcccttgtc agatacatca acccggatac tggtcgggca ctgtttgagg
6541 ccaagctcca cagagctggt ttcatgacag tctcgagcaa caccagtgcc ccggtggttg
6601 tgcctgccaa tgggtacttc agatttgact cttgggttaa tcaattctat tctctcgccc
6661 ccatgggaac tggaaatggg cgtagaaggg ttcaataatg gctggagctt ttatggctgg
6721 tcttgcaggg gacgtgctca gcaatgggct cagttcatta attaatgcag gtgctaatgc
6781 aataaatcag agggcagaat ttgattttaa tcagaaatta cagcaaaatt ctttcaatca
6841 tgataaggag atgttgcagg cccagattca ggcaactaag cagctgcagg cagacatgat
6901 ggctataaaa cagggggtcc tgaccgctgg cggcttttcc cctgctgatg cagccagagg
6961 tgctgtgaat gcgcccatga cacaggcgct ggattggaac ggcacaaggt attgggcacc
7021 aggctctatg aggaccacat cttattctgg aaaattcaca tcaatcgccc cagtgaggca
7081 ggccgacttc cagcacaccc aaagccggcc ttcgagtggc tcttctgtgt cctcctttgc
7141 cactcagtct tcaaggccaa ctctgaccac aaccactggg tcctcacatg gcacagcctc
7201 atcaaattca actcgcagca caggcctctc ccaatcaacg gtctctagag ctacatctag
7261 gactagtgag tgggttagag atcaaaatag aaatttggaa ccctacatgc atggtgcctt
7321 acagacggcc tttgtcaccc caccttccag cagggcgtct gacgggacag tctcaaccgt
7381 cccaaaaggt gttttggact cctggacacc tgcgttcaac acccgcaggc agccgctctt
7441 tgcacacctc cgtaagaggg gggagtcaca tgcctagtga aaaggtgaaa atttgtttag
7501 aataaattga ttctacc
//