Typing tool
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Typing tool
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Complete norovirus genomes
| LC209446 | GII.2 | |
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| GII.P16 |
ORF1: 1..5085
ORF2: 5066..6694
ORF3: 6694..7473
LOCUS LC209446 7517 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2012/GII.P16_GII.2/Saitama-121 RNA, nearly
complete genome.
ACCESSION LC209446
VERSION LC209446.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2012/GII.P16_GII.2/Saitama-121
ORGANISM Norovirus Hu/GII/JP/2012/GII.P16_GII.2/Saitama-121
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7517)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7517
/organism="Norovirus
Hu/GII/JP/2012/GII.P16_GII.2/Saitama-121"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2012/GII.P16_GII.2/Saitama-121"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934272"
/country="Japan: Saitama"
/collection_date="2012"
/note="genotype: GII.P16_GII.2"
gene <1..5085
/gene="POL"
CDS <1..5085
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BBB86956.1"
/translation="SNDANVAVAYNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPA
PRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQPDVAN
TAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMAK
VELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLN
RRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLENYELQGPEDLAI
ELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKE
EANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLAAYMKTLDMEEEKARRLSTKSA
SPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARK
VASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLT
LNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKR
DFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGL
LHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKTMEEL
KQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKHAR
IRYYVRCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEVPKSE
DDEFIISSKDIKEEGKKGKNKTGRGRKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE
EYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVTGSEI
RKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFIT
STHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATV
LIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPY
IYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAP
KLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPP
RPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGETF
TGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLSTMIR
CARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQR
AVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQWNS
IAHWLLALCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKEYGLK
PTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDP
NETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRW
MRFSDLSTWEGDRNLAPNFVNEDGVE"
gene 5066..6694
/gene="VP1"
CDS 5066..6694
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB86957.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLSLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDVPAPLGVPDFQGRVFG
IISQRDKNNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYVPLKGGYGNPA
IDCLLPQEWLQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6694..7473
/gene="VP2"
CDS 6694..7473
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB86958.1"
/translation="MAGAFMAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGKFTSIAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGAASSNSTRSTGLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESHA"
ORIGIN
1 tctaacgacg ctaacgttgc cgttgcttac aacaacaaca acgacaagga aaaatcttca
61 ggtgaaggct tattcacaaa tatgtcttcc accttaaaga aagccctcgg ggcccggccc
121 aaacagcccg ccccgaggga caactcacaa aagcccccaa gaccaccaac tcccgagttg
181 gttaagagga taccccctcc cccacctaat ggtgaagaag aagagccagt cattaggtat
241 gaggttaaga gtgggatctc tggcctgccc gagctcacaa cagtccccca accggatgtg
301 gccaacacgg cattcagtgt cccaccgctg agcttgagag aaaacaggga ggccaaggaa
361 ccgctgacag gggcaatatt agagatgtgg gatggagaga tataccacta tggcctgtac
421 gtggagaaag gcttagtgtt gggtgtgcac aaaccacctg cagctataag catggcaaaa
481 gtggagctga cgccgttgtc attgtactgg cgtgtggtct acacccctca atacctcatc
541 tcccctgaaa ctctcaggag gctcaacgga gaggcattcc cttacaccgc ctttgacaac
601 aattgctatg ccttttgctg ctgggtatta gacctcaatg actcatggct taacaggagg
661 atggtacaaa gaacaacagg cttcttcaga ccttaccaag agtggaacag aaaacccctg
721 cctactatgg atgactccaa aatcaagaag gtggcaaaca tattcctgtg ttcattgtcc
781 acgttgttca ccagacctat aaaagacctc ataggaaaaa ttaaaccatt aaacatcttg
841 aacatcctgg caacgtgtga ctggacattc gccggaatag tggagtctct gatattactt
901 gctgaactct ttggagtttt ctggacaccc ccagatgtgt ctgctatgat cgctccctta
961 cttgaaaact acgagttgca agggccagaa gacctcgcca ttgagctcgt acctgtggta
1021 atgggaggga ttggtttggt gttgggattc accaaagaga aaattggcaa aatgttgtcc
1081 tcagcagcat caacactcag ggcttgtaag gatcttggtg cctatggctt agagatactc
1141 aaattggtca tgaagtggtt cttcccaaag aaagaagagg ccaatgagct agccatggtg
1201 agagctatag aggatgctgt gttggatctt gaggcaatag aaaataatca catgacaact
1261 ctgttgaaag acaaagacag cctagcagcc tacatgaaaa cactagacat ggaagaggag
1321 aaagccagaa gattgtccac aaagtctgca tcccctgaca tagttgggac gatcaacgcc
1381 ctgctggctc gaatagcagc ggctaggtca ttagttcaca gggccaagga ggagttatct
1441 agcaggataa gaccagtagt tgttatgata tctggcaaac cagggatagg taaaactcat
1501 ttggccaggg aggtggcaag aaaggtggca tccactctca caggggacca aagagtcggg
1561 ctcataccga gaaacggtgt ggaccactgg gatgcataca aaggtgagag agtcgtgctg
1621 tgggacgact atggcatgag caaccccatt catgatgctt tgcgcataca agaattggct
1681 gatacgtgtc cccttacctt aaattgcgac agaatcgaaa ataagggaaa agtctttgac
1741 agtgaagtca taataattac aacaaacctt gccaatccag ctccacttga ttatgtcaac
1801 tttgaggcct gttccaggag aattgacttc ctggtgtacg ccgaggcacc agaagtagaa
1861 aaggcaaaac gagactttcc tggtcaacca gatatgtgga aggacgcctt caagtcggac
1921 ttttcacata tcaagttgca acttgcacct cagggtggct ttgacaagaa tggtaacacc
1981 ccacatggga aaggagtgat gaagaccctc accaccggtt ccctgattgc ccgtgcatca
2041 ggcttactgc atgagaggat ggatgaattt gaactccaag gccccacagt taccaccttc
2101 aatttcgacc ggaacagaat caccgcattc agacaattgg ccgcagaaaa caagtatggg
2161 ttggtggaca ccatgagagt tggcaatcaa ttaaaagggg tgaaaaccat ggaagaactc
2221 aaacaagcaa tcaagaatgt gatcatcaag aggtgccgga tcatctacgg tggctccacg
2281 tatgaccttg aatctgatgg caagggcaaa gttttggtgg aaaaggtcaa gaacacctct
2341 atacagacca acaacgagtt ggctggagcc ctgcatcacc tcaaacatgc ccgaatcagg
2401 tattatgtca gatgtgtgca agaagcagtt tactctatca tacaaattgc cggcgctgcg
2461 tttgtcacca cacgcattgc acgccgcatg aacatacaag agctttggtc gaagccacca
2521 ttagaccaaa atgaatcaga ggctaaggaa gaggtcccca agtcagaaga tgacgagttc
2581 atcatatctt ctaaggacat caaggaggaa ggaaagaagg gcaaaaacaa aactggccgt
2641 ggcaggaaac acactgcatt ctctagcaag ggcttgagcg atgaggagta tgacgagtac
2701 aagaggataa gagaagagag aaatgggaag tactctatag aggagtatct tcaagacaga
2761 gacaggtact atgaggaact cgccatcgcc aaggccacgg aagaagactt ctgtgaggag
2821 gaggaggtca aaatccgtca gaggatcttc cgtcccacca ggaaacaaag gaaggaagag
2881 agggctacac taggactagt aactggttca gaaatcagaa aaagaaaccc tgatgacttc
2941 aaacctaaag ggaaactgtg ggccgatgac aacagaagtg ttgactacaa tgagaaactg
3001 gactttgagg cccccccaag catatggtct aggattgtga gttttggttc tggttggggc
3061 ttctgggtat caccaagtct gttcataaca tcaactcatg taatccctgc aggcataaca
3121 gaagcatttg gagtccccat caaacaaatc caggtccaca aatcaggtga attttgccgg
3181 ttcagattcc caaaaccaat tagaccagat gtgacaggaa tgatattgga agaaggtgcg
3241 cctgagggca ccgtggcaac cgtactcatc aaacgcccta ccggagagct catgcccctt
3301 gcagccagaa tggggacaca cgcaaccatg aagattcaag gccgcatggt tggcggacag
3361 atgggtatgt tgctcactgg ttcaaatgct aaaggaatgg atttgggaac aactcctggt
3421 gattgtggct gcccctacat ctacaaaagg ggcaatgact atatagtcat tggggtgcac
3481 acagcagcag cccgtggtgg aaacaccgtc atctgtgcca cacagggaag tgagggtgag
3541 gcaactcttg agggtggaga tgacaaagga acatactgtg gagcacccat tctaggcccc
3601 gggggggcac caaaattgag caccaaaacc aaattttgga ggtcatcgaa cacgcctctt
3661 ccaccaggga catatgagcc tgcctacctc ggtggccgtg acccgcgtgt taagggtggg
3721 ccctccttgc agcaggtaat gagagaccag ttgaaaccat tcactgaacc caggggtaaa
3781 cctccaagac caagtgtgtt ggaggcagcc aaacaaacca tcatcaatgt cctcgaacaa
3841 accctggacc ctccacaaaa atggacatac gcacaggcgt gtgcttcact tgacaaaacc
3901 acctccagcg ggcatcccca ccacgtccga aagaatgaat tctggaatgg tgagaccttc
3961 actggtaaat tggcagacca agcatcaaaa gcaaatctaa tgtttgagga agggaaacac
4021 atgacaccag tgtatacagc agccctcaag gacgagctgg tcaagactga caaagtctat
4081 ggaaagatca agaagagact gctctggggc tctgatttgt ccaccatgat ccggtgcgcc
4141 aggtcctttg gtgggcttat ggatgagatg aaggcacact gcatatcact cccagtccga
4201 gttggcatga acatgaatga agatggtcca ataatatttg agaagcactc cagatacaag
4261 taccattatg atgcagacta ctcccgctgg gattcaacac aacagagggc agtattagca
4321 gcagccttgg aaatcatggt caggttctct gcagagccac aattggcaca gatagtcgct
4381 gaggatctgc tggcccccag tgtggtagat gtaggagact ttaaaatttc aataaatgag
4441 gggctccctt ctggtgtacc atgcacttct caatggaatt ccatcgcaca ctggctgcta
4501 gccctctgtg ccttgtctga agtcaccaaa ctgtcccctg acattgtaca ggcaaattcc
4561 atgttctcat tttacggtga tgacgagatt gtcagcaccg acataaaatt ggaccctgaa
4621 aagttaacca ccaaactgaa ggagtatggc ctgaaaccaa ctcgcccaga caaaaccgag
4681 ggacccctga tcatcagtga ggatttgaat ggactcactt tcctccggag gacggtgact
4741 cgtgacccag ctggctggtt tggaaaattg gaccaaagct caatattgag gcagatgtac
4801 tggactagag gaccaaatca tgaagacccc aatgagacaa tgatacccca ctctcaaaga
4861 cccatacagc tcatggcact gcttggtgag gcctcccttc acggaccctc tttctacagc
4921 aaaatcagta aattggtcat aactgaactc aaagaaggtg ggatggactt ttacgtgcca
4981 agacaggaac ccatgttcag gtggatgagg ttttctgact tgagcacgtg ggagggcgat
5041 cgcaatctgg ctcccaattt tgtgaatgaa gatggcgtcg aatgacgccg ctccatcaac
5101 tgatggtgca gccggcctcg tgccagaaag taacaatgag gtcatggctc ttgaacccgt
5161 ggctggtgcc gccttggcag caccggtcac cggtcaaaca aatattatag acccttggat
5221 tagagcaaat tttgtccagg cccccaatgg cgaatttaca gtctctcccc gtaatgcccc
5281 tggtgaagtg ctattaagtc tagaattggg tccagaatta aatccttatc tggcacattt
5341 agcaagaatg tacaacgggt atgccggtgg gatggaggtg caggtcatgt tggctgggaa
5401 tgcgttcaca gccggcaagt tggtcttcgc cgctgtgcca cctcacttcc cggttgaaaa
5461 ccttagccca cagcaaatta ccatgttccc tcatgtgatt atagatgtaa ggaccttgga
5521 acctgtttta ttaccactcc ctgatgttag gaataatttc ttccattaca atcagaaaga
5581 tgatcccaaa atgagaattg tggctatgct ttataccccc cttagatcta atggttcagg
5641 tgatgatgtg ttcacagttt cctgcagggt gttgaccaga ccctcccctg atttcgattt
5701 cacatatctg gtgccaccaa cagtggaatc taaaacaaaa ccattcaccc tcccaatcct
5761 cacacttggg gaactttcca attctaggtt cccagtgtcc atagaccaga tgtacaccag
5821 ccctaatgaa gttatatcag tgcagtgtca aaatggtagg tgcacattgg acggggaact
5881 tcaagggaca acacaactcc aagtcagtgg catttgtgct ttcaaggggg aagtgaccgc
5941 ccatttgcat gacaatgatc acctatacaa tgtcaccatc acaaatttga atgggtcccc
6001 ttttgacccc tccgaggacg ttcctgcccc tctgggcgtg cctgatttcc agggaagggt
6061 ctttggtatt atctcccaaa gagacaaaaa taatagccct gggcataatg aaccagcaaa
6121 caggggacac gacgctgtgg tccctactta cacagcacag tacactccaa aattgggtca
6181 gattcaaatt ggcacatggc agaccgatga tcttacagtc aaccaaccag tcaaattcac
6241 cccagttgga ctcaatgaca ctgaacattt taatcagtgg gtggtcccca gatacgctgg
6301 tgccctaaac ctcaacacaa accttgcccc ttctgttgct ccggtatttc caggggagcg
6361 cctgcttttc tttagatcat acgttcccct caagggtggt tatggaaatc cagccattga
6421 ttgcctatta ccacaagagt ggttgcaaca cttctatcag gaagctgccc catcaatgag
6481 tgaggtggcc cttgtcagat acatcaaccc ggatactggt cgggcactgt ttgaggccaa
6541 gctccacaga gctggtttca tgacagtctc gagcaacacc agtgccccgg tggttgtgcc
6601 tgccaatggg tacttcagat ttgactcttg ggttaatcaa ttctattctc tcgcccccat
6661 gggaactgga aatgggcgta gaagggttca ataatggctg gagcttttat ggctggtctt
6721 gcaggggacg tgctcagcaa tgggctcagt tcactaatta atgcaggtgc taatgcaata
6781 aatcagaggg cagaatttga ttttaatcag aaattacagc aaaattcttt caatcatgat
6841 aaggagatgt tgcaggccca gattcaggca actaagcagc tgcaggcaga catgatggct
6901 ataaaacagg gggtcctgac cgctggcggc ttttcccctg ccgatgcagc cagaggtgct
6961 gtgaatgcgc ccatgacaca agcgctggat tggaacggca caaggtattg ggcaccaggc
7021 tctatgagga ccacatctta ttctggaaag ttcacatcaa tcgccccagt gaggcaggcc
7081 gacttccagc acacccaaag ccggccttcg agtggctctt ctgtgtcctc ctttgccact
7141 cagtcttcaa ggccaactct gaccacaacc actgggtcct cacatggcgc agcctcatca
7201 aattcaactc gcagcacagg cctctcccaa tcaacggtct ctagagctac atctaggact
7261 agtgagtggg ttagagatca aaatagaaat ttggaaccct acatgcatgg tgccttacag
7321 acggcctttg tcaccccacc ttccagcagg gcgtctgacg ggacagtctc aaccgtccca
7381 aaaggtgttt tggactcctg gacacctgcg ttcaacaccc gcaggcagcc gctcttcgca
7441 cacctccgta agagggggga gtcacatgcc tagtgaaaag gtgaaaattt gtttagaata
7501 aattgattct acctttt
//