Typing tool
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Typing tool
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Complete norovirus genomes
| LC209445 | GII.2 | |
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| GII.P16 |
ORF1: 5..5098
ORF2: 5079..6707
ORF3: 6707..7486
LOCUS LC209445 7531 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2012/GII.P16_GII.2/Saitama-122 RNA, complete
genome.
ACCESSION LC209445
VERSION LC209445.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2012/GII.P16_GII.2/Saitama-122
ORGANISM Norovirus Hu/GII/JP/2012/GII.P16_GII.2/Saitama-122
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7531)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7531
/organism="Norovirus
Hu/GII/JP/2012/GII.P16_GII.2/Saitama-122"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2012/GII.P16_GII.2/Saitama-122"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934271"
/country="Japan: Saitama"
/collection_date="2012"
/note="genotype: GII.P16_GII.2"
gene 5..5098
/gene="POL"
CDS 5..5098
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BBB86953.1"
/translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPAPRDNPQKPPRPPTPELVKRIPPPPPNGEEEPVIRFEVKSGISGLPDLTTVPQPD
AINTAFSVPPLSLRENREAKEPLTGAIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
MAKVELAPLSLYWRVVYTPQYLISPDTLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIGK
IKPLNILNILATCDWTFAGIVESLILFAELFGVYWTPPDVSAMIAPLLGEYELQGPED
IAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMKTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREV
AKKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERMDEFELQGPAITTFNFDRNRVTAFRQLAAENKYGLVDTMRIGNQLKGVKTM
EELKQAIKNVSIKRCQIIYHGSTFDLESDGKGKVTVEKVKNTTVQTNNELAGALHHLR
SARIRYYVKCVQEAIYSILQIAGAAFVTTRIARRMNIQELWSKPPLDQSEPEVKEETP
KLEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
SEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL
FITSTHVIPSGITEAFGVPIKQIQVHKSGEFCRLRFPKPIRPDVTGMILEEGAPEGTV
ATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG
GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNG
ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLST
MVRCARAFGGLMDEMKAHCISLPIRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
QQRAVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQ
WNSISHWLLTLCALSEVTNLSPDIVQVNSMFSFYGDDEIVSTDIKLDPEKLTTKLREY
GLKPTRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPNH
EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5079..6707
/gene="VP1"
CDS 5079..6707
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB86954.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
VISQRDKHNTPGHNEPANRAHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTDHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGTPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6707..7486
/gene="VP2"
CDS 6707..7486
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB86955.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLAAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTAYSGRFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSYGTTSSNSTRSTNLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgttgccgtt gcttgcaaca acaacaacga
61 caaggaaaaa tcttcgggtg aaggcttatt tacaaatatg tcttccaccc taaagaaagc
121 cctcggggct cggcctaaac agcctgcccc gagggacaac ccgcaaaaac ccccaagacc
181 accaacgccc gagttggtta aaaggatacc ccctccccca cctaatggcg aagaagagcc
241 agtcattagg tttgaggtca agagtggaat ttctggcctg cccgatctca cgacagtccc
301 tcaaccagat gcgatcaata cggcattcag tgttccaccg ttgagcctaa gagaaaacag
361 ggaggccaag gaaccgctaa ctggggcaat aatagagatg tgggatggag agatatacca
421 ctatggtttg tatgtggaga aaggtctagt cttgggtgta cacaaaccac ccgcagctat
481 aagcatggca aaagtggagt tagcaccgct gtcgttatac tggcgtgtgg tgtacactcc
541 ccaatacctc atctcccctg acactctcaa gaggctcaac ggagaggcat tcccctacac
601 cgcctttgat aataactgtt atgccttttg ctgctgggtg ttagacctta atgactcatg
661 gctcagcaga agaatggtgc agagaacgac aggcttcttc agaccctacc aagagtggaa
721 cagaaagccc ctacccacca tggatgattc caaaattaag aaggtggcaa acatattcct
781 atgttcattg tctacactgt tcaccaggcc tataaaagac atcataggga aaatcaaacc
841 actgaatatc ttaaacattc tggcaacgtg tgattggacg ttcgccggaa tcgtagagtc
901 tctaatatta tttgctgaac tctttggagt ttactggaca cccccagatg tgtctgctat
961 gatcgctccc ttacttggcg aatacgagtt gcagggacca gaagacatcg ccgttgagct
1021 cgtgcctgta gtgatggggg ggattggttt ggtgctagga ttcaccaaag agaaaattgg
1081 caaaatgctg tcctcagcag cgtcaacgct cagggcttgc aaagaccttg gtgcctacgg
1141 tttagagata ctcaaattag tcatgaaatg gtttttccca aagaaagaag aagccaatga
1201 actagccatg gtgagagcaa tagaggatgc tgttctggat cttgaggcga tagaaaacaa
1261 tcacatgaca gccctgctga aagataaaga cagccttgca acctacatga aaacactgga
1321 tctagaggag gagaaagcca gaaaactgtc cacgaaatct gcatcccctg acatagttgg
1381 gacaatcaac gccctactgg ctcgaatagc ggcggctaga tcactagtcc acagggccaa
1441 ggaggagcta tctagcagaa tcagaccagt tgtcgttatg atatctggca agccagggat
1501 aggcaagacc cacttggcca gggaggtggc gaaaaaggtg gcgtccactc tcacaggaga
1561 tcaaagagtt ggactcatac cgagaaacgg tgtggaccat tgggatgcat acaaaggtga
1621 aagagtcgtg ttgtgggatg actatggcat gagcaaccct attcatgatg cactgcgcat
1681 acaggaattg gccgacacat gccccctcac cttgaattgt gacagaattg aaaataaggg
1741 gaaagttttt gatagtgatg ttataataat tacaacaaac cttgccaacc cagctcctct
1801 tgattatgtc aactttgaag cctgttccag gagaattgac ttcctggtgt acgccgaagc
1861 gccagaagtg gaaaaggcaa aacgggattt ccctggtcaa ccagatatgt ggaaggacgc
1921 cttcaaagcg gacttctcgc acatcaagtt gcaacttgcg cctcagggcg gctttgacaa
1981 gaatggcaac accccacatg ggaaaggagt gatgaagacc cttaccaccg gttctctgat
2041 cgcccgtgcg tcaggtttgc tacatgagag gatggatgaa tttgaacttc agggccccgc
2101 aatcaccact ttcaactttg accggaacag agtcaccgct ttcagacaac tggctgctga
2161 gaacaaatat gggctggtgg acaccatgag gattggcaat caattgaaag gggtgaaaac
2221 catggaagaa ctcaagcaag ctatcaagaa tgtgtccatc aagaggtgcc agattatcta
2281 ccatggatcc acgtttgacc ttgagtctga tggtaagggt aaagttacag tagaaaaggt
2341 caaaaacacc actgttcaga ccaacaacga attggccgga gccctgcacc acctcagaag
2401 tgctcgaatc aggtattatg tcaaatgtgt gcaagaggca atctattcca tcctacaaat
2461 tgccggcgcc gcgttcgtca ccacacgcat tgcacgccgc atgaatatac aagagctttg
2521 gtcaaagcca ccattagacc aaagcgagcc agaggttaag gaggagaccc ccaagttaga
2581 ggatgatgaa ttcatcattt cctccaagga cattaaggag gaagggaaga agggtaaaaa
2641 caaaactggc cgtggcaaga aacacactgc attctctagc aagggcttga gcgatgagga
2701 gtatgacgag tacaagagga taagagaaga gagaaatggg aagtactcta tagaggagta
2761 tcttcaagac agggacaggt actatgaaga actcgccatc gccaaggcca cggaagaaga
2821 cttttgtgag gaggaagaaa taaaaatccg ccaacggatc tttcgtccca ctagaaaaca
2881 aaggaaggaa gaaagggcca cgttagggct agtgactggt tcagaaatca gaaaaagaaa
2941 ccctgatgac ttcaaaccta aagggaaatt gtgggccgac gacaacagaa gtgttgacta
3001 caatgaaaaa ctggactttg aggccccccc aagcatatgg tctaggatcg taagctttgg
3061 ttcaggttgg ggcttctggg tgtcaccaag cctgtttata acatcaactc atgtgatccc
3121 ttcgggcata acagaggcat ttggagtccc catcaaacag attcaagtcc acaaatcagg
3181 cgagttttgt cggctcagat tcccaaaacc aattagacca gatgtaacag gaatgatcct
3241 ggaagaaggt gcgccagagg gcaccgtagc aaccgtactc atcaagcgcc ccactggaga
3301 actcatgccc ctcgcagcta gaatgggaac acacgcaacc atgaaaattc agggccgcat
3361 ggttggtggg cagatgggca tgttgctcac tggttcaaat gctaagggta tggatctggg
3421 gacaactccc ggtgactgtg gctgcccgta catttacaaa aggggcaatg actacatagt
3481 cattggagtg cacacagcag cagcccgagg tggaaatact gtcatctgtg ccacacaggg
3541 aagtgagggc gaggcgaccc tcgagggtgg agacgacaaa ggaacatact gtggggcacc
3601 catcctgggc cctggagggg cgccaaagtt aagcacaaaa accaaatttt ggaggtcatc
3661 aaacacgccc cttccaccag ggacatatga gcctgcctac cttggcggtc gtgatccgcg
3721 tgtaaagggt gggccttccc tacaacaagt catgagagat cagttaaagc ccttcaccga
3781 gcccaggggt aaacccccga gacctagtgt actggaggca gccaaacaga ccatcatcaa
3841 cgttctcgag caaactttgg accctccaca aaaatggacg tacgcacagg cgtgcgcttc
3901 acttgataaa accacctcta gtgggcaccc ccatcacgct cgaaagaatg agttctggaa
3961 cggtgagacc tttaccggta agttggcaga ccaggcatca aaagcaaact taatgtttga
4021 ggaagggaaa catatgacac cagtatacac agcagccctt aaggatgagt tagttaaaac
4081 cgacaaaatc tatgggaaga tcaagaaacg cctgctttgg ggctctgatt tatccaccat
4141 ggtccgatgt gccagggcct ttggtggact catggacgag atgaaggcgc actgcatatc
4201 gctcccaatc cgagttggca tgaatatgaa tgaggatggt ccaataatat ttgagaagca
4261 ctccagatat aaatatcact atgatgcaga ttactctcgc tgggactcaa cacaacagag
4321 agctgttcta gcagcggcct tggaaataat ggtcagattc tctgcagaac cgcaactggc
4381 ccaaacagtt gctgaggatc tgctggcccc cagtgtagta gatgtcggag acttcaaaat
4441 ttcaataaat gagggactcc cttctggtgt accatgcact tcccaatgga actccatctc
4501 acactggtta ctaactctct gtgctttgtc tgaagtcacc aatctgtctc ctgacatcgt
4561 gcaggtaaat tctatgttct cattttacgg tgatgacgag atcgtcagca ccgatataaa
4621 attggaccct gaaaagttaa ccaccaaatt gagggagtat ggtctaaaac caactcgccc
4681 agacaaaacc gaggggccct tgatcatcag tgaggatttg gacggtctca ccttcctccg
4741 gaggacggtt tctcgtgacc cagccggttg gtttggaaag ttagatcaaa gctcaatact
4801 aaggcagatg tattggacca gaggaccaaa ccatgaagac cccaatgaga caatgatacc
4861 ccactctcaa agacccatac agctcatggc actgcttggt gaggcctccc ttcacggacc
4921 ctctttctac agcaagatta gtaaattggt cataactgaa ctcaaagaag gtgggatgga
4981 cttttacgtg ccaagacagg aacccatgtt cagatggatg aggttttctg acttgagcac
5041 gtgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg
5101 ccgctccatc tactgatggt gcagccggcc tcgtgccaga aagtaataat gaggtcatgg
5161 ctcttgaacc cgtggctggt gccgccttgg cagccccagt caccggtcaa acaaatataa
5221 tagacccttg gattagagca aattttgtcc aggcccccaa tggtgaattt acagtctctc
5281 cccgtaactc ccctggtgaa gtgctattga atctagagtt gggtccagaa ttaaatcctt
5341 atctggcaca tttagcaaga atgtacaatg ggtatgccgg tgggatggag gtgcaggtca
5401 tgttggctgg gaacgcgttc acagccggca agttagtctt cgccgctgtg ccaccccact
5461 tcccggtcga aaaccttagc ccacagcaaa ttaccatgtt ccctcatgtg attatagatg
5521 tcaggacttt ggaacctgtt ttattaccac tccctgatgt tagaaataac ttcttccatt
5581 acaatcagaa agatgatccc aagatgagaa ttgtggctat gctttatacc ccccttaggt
5641 ctaatggttc aggcgatgat gtgtttacag tctcctgcag ggtgttgact agaccctccc
5701 ctgattttga tttcacatat ctggtgccac caacagtgga atctaaaaca aaaccattca
5761 ctctcccaat cctcacgctt ggggaacttt ccaattctag attcccagtg tccatagatc
5821 agatgtacac cagccccaat gaagtcatat cagtacagtg tcaaaatggc aggtgcacac
5881 tggatgggga actccaagga acaacacaac tccaagtcag tggcatttgt gctttcaagg
5941 gagaagtgac tgcccacttg catgacaatg atcacctgta taatgtcacc atcacaaact
6001 tgaatgggtc cccttttgac ccctccgagg acatccccgc ccctctgggc gtacctgatt
6061 ttcagggaag ggtctttggt gtcatctccc aaagagacaa acacaatacc cctggacata
6121 atgaaccagc aaacagggca cacgatgccg tggtccctac ttatacagca cagtataccc
6181 caaaattggg tcagattcaa attggcacat ggcagactga cgatctcaca gtcaaccaac
6241 cagtcaaatt caccccagtt ggacttaatg acactgacca ttttaaccaa tgggtggtcc
6301 ccaggtatgc tggtgcccta aaccttaaca caaaccttgc cccttctgtt gctccagtat
6361 ttccagggga gcgtctgctc tttttcagat catacatccc cctcaagggt ggctatggaa
6421 ctccagccat cgattgccta ctaccacaag agtgggtgca acatttctat caggaagcag
6481 ccccttcgat gagtgaggtg gcccttgtca gatacatcaa cccggatact ggtcgggcac
6541 tgtttgaggc caaactccat agagctggtt tcatgacagt ctcaagcaac accagtgccc
6601 cggtggttgt gcctgccaac ggatacttca ggtttgattc ttgggtgaac caattctatt
6661 ctctcgcccc catgggaact ggaaatgggc gcagaagggt ccaataatgg ctggagcttt
6721 tgtagctggt cttgcagggg acgtgctcag caatgggctc agttcattaa ttaatgcagg
6781 tgctaatgca ataaatcaga gggcagaatt tgatttcaat cagagattac agcaaaattc
6841 tttcaatcat gataaggaga tgttgcaggc ccagatccag gcaactaagc agctgcaggc
6901 agatatgatg gctataaaac agggggtcct agctgctggc ggcttttccc ctgctgatgc
6961 agccagaggt gctgtgaacg cgcccatgac acaggcgctg gactggaacg gcacaaggta
7021 ctgggcacca ggctccatga ggactacagc ctactctggg agattcacat caaccgcccc
7081 agtgaggcag gccgattttc agcacaccca aagccggcct tcgagtggtt cttctgtgtc
7141 ctcctttgct actcagtctt caaggccgac cctgactaca accactgggt cctcatatgg
7201 cacaacctca tcaaattcga ctcgcagcac aaacctctcc caatcaacgg tctccagggc
7261 tacatctagg actggtgaat gggttagaga ccaaaacaga aatttggaac cttacatgca
7321 tggtgcctta cagacagcct ttgtcactcc accttccagc agggcgtctg atgggacggt
7381 ctcaaccgtt ccaaaaggtg ttttggactc ctggacacct gcgtttaaca cccgcaggca
7441 gccgcttttc gcacacctcc gtaagagggg ggagtcacaa gcttagtgaa aaggtgaaaa
7501 tttatttaaa atgaattgat ttttaccttt t
//