Typing tool
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Typing tool
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Complete norovirus genomes
| LC209441 | GII.2 | |
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| GII.P16 |
ORF1: 1..5085
ORF2: 5066..6694
ORF3: 6694..7473
LOCUS LC209441 7517 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2014/GII.P16_GII.2/Saitama-126 RNA, nearly
complete genome.
ACCESSION LC209441
VERSION LC209441.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2014/GII.P16_GII.2/Saitama-126
ORGANISM Norovirus Hu/GII/JP/2014/GII.P16_GII.2/Saitama-126
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7517)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7517
/organism="Norovirus
Hu/GII/JP/2014/GII.P16_GII.2/Saitama-126"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2014/GII.P16_GII.2/Saitama-126"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934267"
/country="Japan: Saitama"
/collection_date="2014"
/note="genotype: GII.P16_GII.2"
gene <1..5085
/gene="POL"
CDS <1..5085
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BBB86941.1"
/translation="ASNDATVAVACNNNNDKEKSSGEGLFINMSSTLKKALGARPKQP
APRDNPQKPPRPPTPELVKRIPPPPPNGEEEPVIRFEVKSGISGLPDLTTVPQPDATN
TAFSVPPLSLRENREAKEPLTGAIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMAK
VELAPLSLYWRVVYTPQYLISPDTLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIGKIKP
LNILNILATCDWTFAGIVESLILFAELFGVYWTPPDVSAMIAPLLGEYELQGPEDIAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKE
EANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMKTLDLEEEKARKLSTKSA
SPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVAKK
VASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLT
LNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKR
DFPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGL
LHERMDEFELQGPTITTFNFDRNRVTAFRQLAAENKYGLVDTMRIGNQLKGVKTMEEL
KQAIKNVSIKRCQIIYHGSTFDLESDGKGKVTVEKVKNTTVQTNNELAGALHHLRSAR
IRYYVKCVQEAIYSILQIAGAAFVTTRIARRMNIQELWSKPPLDQSEPEVKEETPKLE
DDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE
EYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEI
RKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFIT
STHVIPSGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATV
LIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPY
IYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAP
KLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPP
RPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNGETF
TGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMVR
CARAFGGLMDEMKAHCISLPIRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQR
AVLAAALEVMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQWNS
ISHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLREYGLK
PTRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPNHEDP
NETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRW
MRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5066..6694
/gene="VP1"
CDS 5066..6694
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB86942.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICVFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
VISQRDKHNTPGHNEPANRAHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTDHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGTPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
gene 6694..7473
/gene="VP2"
CDS 6694..7473
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB86943.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQVQATKQLQADMMAIKQGVLAAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTAYSGRFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSYGTASSNSTRSTNLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gcgtctaatg acgctaccgt tgccgttgct tgcaacaaca acaacgacaa ggaaaaatct
61 tcgggtgaag gcttatttat aaatatgtct tccaccctaa agaaagccct cggggctcgg
121 cctaaacagc ctgccccgag ggacaaccca caaaaacccc caagaccacc aacgcccgag
181 ttggttaaaa ggataccccc tcccccacct aatggcgaag aagagccagt cattaggttt
241 gaggtcaaga gtggaatttc tggcctgccc gatctcacga cagttcctca accagatgcg
301 accaatacgg cattcagtgt cccaccgttg agcttaagag aaaacaggga ggccaaggaa
361 ccgctaactg gggcaataat agagatgtgg gatggagaga tataccacta tggtttgtat
421 gtggagaaag gcctagtctt gggtgtgcac aaaccacccg cagctataag catggcaaaa
481 gtggaattag caccgctgtc gttatactgg cgtgtggtgt acactcccca atacctcatc
541 tcccctgaca ctctcaagag gcttaacgga gaggcattcc cctacaccgc ctttgataat
601 aactgttatg ccttttgctg ctgggtgtta gaccttaatg attcatggct cagcagaaga
661 atggtgcaga ggacgacagg cttcttcaga ccctaccaag agtggaacag aaagccccta
721 cccaccatgg atgattccaa aattaagaag gtggcaaaca tattcctatg ttcattgtct
781 acactgttca ccaggcctat aaaagacatc ataggaaaaa tcaaaccact gaacatctta
841 aacattctgg caacatgtga ttggacgttc gccggaatcg tagagtctct aatattattt
901 gctgaactct ttggagttta ctggacaccc ccagatgtgt ctgctatgat cgccccctta
961 cttggcgaat acgagttgca gggaccagaa gacatcgccg ttgagctcgt acctgtagtg
1021 atggggggga ttggtttggt gctaggattc accaaagaga aaattggcaa aatgctgtcc
1081 tcagcagcgt caacgctcag ggcttgcaaa gaccttggtg cctatggttt agagatactc
1141 aaattagtca tgaaatggtt tttcccaaag aaagaagaag ccaatgaact agccatggtg
1201 agagcaatag aggatgctgt tctggatctt gaggcgatag aaaacaatca catgacagcc
1261 ctgctgaaag ataaagacag ccttgcaacc tacatgaaaa cactggacct agaggaggag
1321 aaagccagaa aactttccac gaaatctgca tctcctgaca tagttgggac aatcaacgcc
1381 ctgctggctc gaatagcggc ggctagatca ctagtccaca gggccaagga ggagctatct
1441 agcagaatca gaccagttgt cgttatgata tctggcaagc cagggatagg caagacccac
1501 ttggccaggg aggtggcgaa aaaggtggcg tccactctca caggagatca aagagttgga
1561 ctcataccga gaaacggtgt ggaccattgg gatgcataca aaggtgaaag ggtcgtgttg
1621 tgggatgact atggcatgag taaccctatt catgatgcac tgcgcataca ggaattggcc
1681 gacacatgcc ccctcacctt gaattgtgac agaatcgaaa ataagggaaa agtttttgat
1741 agtgatgtta taataattac aacaaacctt gccaacccag ctcctcttga ttatgtcaac
1801 tttgaggcct gttccaggag aattgacttc ctggtatacg ccgaagcgcc agaagtggaa
1861 aaggcaaaac gggatttccc tggtcaacca gatatgtgga aggacgcctt caaagcggac
1921 ttctcgcaca tcaagttgca actcgcgcct cagggcggct ttgacaagaa tggcaacacc
1981 ccacatggga aaggagtgat gaagaccctt accaccggtt ctctgatcgc ccgtgcgtca
2041 ggtttgctac atgagaggat ggatgaattt gaacttcagg gccccacaat caccactttc
2101 aactttgacc ggaacagagt caccgctttc agacaactgg ctgctgagaa caaatatggg
2161 ctggtggaca ccatgaggat tggcaatcaa ttgaaagggg tgaaaaccat ggaagaactc
2221 aagcaagcta tcaagaatgt gtccatcaag aggtgccaga ttatctacca tggatccacg
2281 tttgaccttg agtctgatgg caagggtaaa gttacagtag aaaaggtcaa aaacaccact
2341 gttcagacca acaacgaatt ggccggagcc ctgcaccacc tcagaagtgc tcgaatcagg
2401 tattatgtca aatgtgtgca agaggcaatc tactccatcc tacaaattgc cggcgccgcg
2461 tttgtcacca cacgcattgc acgccgcatg aatatacaag agctttggtc aaagccacca
2521 ttagaccaaa gcgagccaga ggttaaggag gagaccccca agttagagga tgatgaattc
2581 atcatctcct ccaaggacat taaggaggaa gggaagaagg gcaaaaacaa aactggccgt
2641 ggcaagaaac acactgcatt ctctagcaag ggcttgagcg atgaggagta tgacgagtac
2701 aagaggataa gagaagagag aaatgggaag tactctatag aggagtatct tcaagacagg
2761 gacaggtact atgaagaact cgccatcgcc aaggccacgg aagaagactt ttgtgaggag
2821 gaagaaataa aaatccgcca gcggatcttt cgtcccacta gaaaacaaag gaaggaagaa
2881 agggccacgt tagggctagt gactggttcg gaaatcagaa aaagaaaccc tgatgacttc
2941 aaacctaaag ggaaattgtg ggccgacgac aacagaagtg ttgactataa tgaaaaactg
3001 gactttgagg cccccccaag catatggtct aggatcgtaa gctttggttc aggttggggc
3061 ttctgggtgt caccaagcct gtttataaca tcaactcatg tgatcccttc gggtataaca
3121 gaggcatttg gagtccctat caaacagatt caagtccaca aatcgggcga gttttgtcgg
3181 ttcagattcc caaaaccaat tagaccagat gtaacaggaa tgatcctgga agaaggtgcg
3241 ccagagggca ccgtagcaac cgtgctcatc aagcgcccca ctggagaact catgcccctc
3301 gcagctagaa tgggaacaca cgcaaccatg aaaattcagg gccgcatggt tggtgggcag
3361 atgggcatgt tgctcactgg ttcaaatgct aagggtatgg atctggggac aactcccggt
3421 gactgtggct gcccgtatat ttacaaaagg ggcaatgact acatagtcat tggagtgcac
3481 acagcagcag cccgaggtgg taacactgtc atctgtgcca cacagggaag tgagggtgag
3541 gcgaccctcg agggtggaga tgacaaagga acatactgtg gggcacccat cctgggccct
3601 ggaggggcgc caaagttaag cacaaaaacc aaattttgga gatcatcaaa tacgcccctt
3661 ccaccaggga catatgagcc tgcctacctt ggcggtcgtg atccgcgtgt aaagggtggg
3721 ccttccctac aacaagtcat gagagatcag ttaaagccct tcaccgagcc caggggtaaa
3781 cccccgagac ctagtgtgct ggaggcagcc aaacagacca tcatcaacgt tctcgagcaa
3841 actttggatc ctccacaaaa atggacgtac gcacaggcgt gcgcttcact tgataaaacc
3901 acctctagtg ggcaccccca tcacgctcga aagaatgaat tctggaacgg tgagaccttt
3961 accggtaagt tggcagacca agcatcaaaa gcaaacttaa tgtttgagga agggaaacat
4021 atgacaccag tgtacacagc agcccttaag gatgagttgg ttaaaaccga caaaatctat
4081 gggaagatca agaaacgcct gctttggggc tctgatttat ccaccatggt ccgatgtgct
4141 agggcctttg gtggactcat ggacgagatg aaggcgcact gcatatcgct cccaatccga
4201 gttggcatga atatgaatga ggatggccca ataatatttg agaagcactc cagatataaa
4261 tatcactatg atgcagatta ctctcgctgg gactcaacac aacagagggc tgttctagca
4321 gcggccttgg aagtaatggt cagattctct gcagaaccgc aactggccca aacagttgct
4381 gaggacctgc tggcccccag tgtagtagat gtcggagact tcaaaatttc aataaatgag
4441 ggactccctt ctggtgtacc atgcacttcc cagtggaact ccatctcaca ctggttacta
4501 actctctgtg ctttgtctga agtcaccaat ctgtctcctg acatcgtgca ggcaaattct
4561 atgttctcat tttacggtga tgacgagatc gtcagcaccg atataaaatt ggaccctgaa
4621 aagttaacca ccaaattgag ggagtatggt ctaaaaccaa ctcgcccaga caaaaccgag
4681 gggcccttga tcatcagtga ggatttggac ggtctcacct tcctccggag gacggtttct
4741 cgtgacccag ctggttggtt tggaaagtta gaccaaagct caatactaag gcagatgtat
4801 tggaccagag gaccaaacca tgaagacccc aatgagacaa tgatacccca ctctcaaaga
4861 cccatacagc tcatggcact gcttggtgag gcctcccttc acggaccctc tttctacagc
4921 aagattagta aattggtcat aactgaactc aaagaaggtg ggatggactt ttacgtgcca
4981 agacaggaac ccatgttcag atggatgagg ttttctgact tgagcacgtg ggagggcgat
5041 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctac
5101 tgatggtgca gccggcctcg tgccagaaag taataatgag gtcatggctc ttgaacccgt
5161 ggctggtgcc gccttggcag ccccagtcac cggtcaaaca aatataatag acccttggat
5221 tagagcaaat tttgtccagg cccccaatgg tgaatttaca gtctctcccc gtaactcccc
5281 tggtgaagtg ctattgaatc tagagttggg tccagaatta aatccttatc tggcacattt
5341 agcaagaatg tacaatgggt atgccggtgg gatggaggtg caggtcatgt tggctgggaa
5401 tgcgttcaca gccggcaagt tagtcttcgc cgctgtgcca ccccacttcc cggtcgaaaa
5461 ccttagccca cagcaaatta ccatgttccc tcatgtgatt atagatgtca ggactttgga
5521 acctgtttta ttaccactcc ctgatgttag gaataacttc ttccattaca atcagaaaga
5581 tgatcccaag atgagaattg tggctatgct ttacaccccc cttaggtcta atggttcagg
5641 cgatgatgtg tttacagtct cctgcagggt gttgactaga ccctcccctg attttgattt
5701 cacatatctg gtgccaccaa cagtggaatc taaaacaaaa ccattcactc tcccaatcct
5761 cacgcttggg gaactttcca attctagatt cccagtgtcc atagaccaga tgtacaccag
5821 ccccaatgaa gtcatatcag tgcagtgtca aaatggcagg tgcacgctgg atggggaact
5881 ccaaggaaca acacaactcc aagtcagtgg catttgtgtt tttaagggag aagtgactgc
5941 ccacttgcat gacaatgatc acctgtataa tgtcaccatc acaaacttga atgggtcccc
6001 ttttgacccc tccgaggaca tccccgcccc tctgggcgta cctgactttc agggaagggt
6061 ctttggtgtc atctcccaaa gagacaaaca caacacccct ggacataatg aaccagcaaa
6121 cagggcacac gatgccgtgg tccctactta tacagcacag tataccccaa aattgggtca
6181 gattcaaatt ggcacatggc agactgacga tctcacagtc aaccaaccag tcaaattcac
6241 cccagttgga cttaatgaca ctgaccattt taaccaatgg gtggtcccca ggtacgctgg
6301 tgccctaaac cttaacacaa accttgcccc ttctgttgct ccagtatttc caggggagcg
6361 tctgctcttt ttcagatcat acatccccct caagggcggt tatggaactc cagccatcga
6421 ttgcctacta ccacaagagt gggtgcaaca tttctatcag gaagcagccc cttcgatgag
6481 tgaggtggcc cttgtcagat acatcaaccc ggatactggt cgggcactgt ttgaggccaa
6541 actccataga gctggtttca tgacagtctc aagcaacacc agtgccccgg tggttgtgcc
6601 tgccaacgga tacttcaggt ttgattcttg ggtgaaccaa ttctattctc tcgcccccat
6661 gggaactgga aatgggcgca gaaggatcca ataatggctg gagcttttgt agctggtctt
6721 gcaggggacg tgctcagcaa tgggcttagt tcattaatta atgcaggtgc taatgcaata
6781 aatcagaggg cagaatttga ttttaatcag agattacagc aaaattcttt caatcatgat
6841 aaggagatgt tgcaggccca ggtccaggca actaagcagc tgcaggcaga catgatggct
6901 ataaaacagg gggtcctggc cgctggcggc ttttcccctg ctgatgcagc cagaggtgct
6961 gtgaacgcgc ccatgacaca ggcgctggat tggaacggca caaggtattg ggcaccaggc
7021 tccatgagga ctacagccta ctctgggaga tttacgtcaa ccgccccagt gaggcaggct
7081 gatttccagc acacccaaag ccggccttcg agtggttctt ctgtgtcctc ctttgctact
7141 cagtcttcaa ggccgaccct gactacaacc actgggtcct catatggcac agcctcatca
7201 aattcgactc gcagcacaaa cctctcccaa tcaacggtct ccagggctac atctaggact
7261 ggtgaatggg ttagagacca aaacagaaat ttggaacctt acatgcatgg tgccttacag
7321 acggcctttg tcaccccacc ttccagcagg gcgtctgatg ggacggtctc aaccgttcca
7381 aaaggtgttt tggactcctg gacacctgcg tttaacaccc gcaggcagcc gcttttcgca
7441 cacctccgta agagggggga gtcacaagct tagtgaaaag gtgaaaattt atttaaaatg
7501 aattgatttt acctttt
//