Typing tool
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Typing tool
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Complete norovirus genomes
| LC209439 | GII.2 | |
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| GII.P31 |
ORF1: 5..5104
ORF2: 5085..6713
ORF3: 6713..7492
LOCUS LC209439 7536 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2014/GII.Pe_GII.2/Saitama-127 RNA, complete
genome.
ACCESSION LC209439
VERSION LC209439.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2014/GII.Pe_GII.2/Saitama-127
ORGANISM Norovirus Hu/GII/JP/2014/GII.Pe_GII.2/Saitama-127
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7536)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7536
/organism="Norovirus
Hu/GII/JP/2014/GII.Pe_GII.2/Saitama-127"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2014/GII.Pe_GII.2/Saitama-127"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934265"
/country="Japan: Saitama"
/collection_date="2014"
/note="genotype: GII.Pe_GII.2"
gene 5..5104
/gene="POL"
CDS 5..5104
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BBB86935.1"
/translation="MKMASNDASAAAAANSNNDIAKSSSDGMLSNMAVTFKRALGARP
KQPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVSQPE
ENNTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK
LKPLNILNILATCDWTFPGIVESLILLAELFGVFWTPPDVSAMITPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRLRPVVVMISGKPGIGKTHLAREL
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTM
PDLKQALKNVAIKKCQIVYSGSTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEETASRDGC
PKPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLI
TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFYGVPVKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHIRKNDYW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5085..6713
/gene="VP1"
CDS 5085..6713
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB86936.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPIESLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPAKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPV
IDCLLPQEWVQHFYQEAAPAMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6713..7492
/gene="VP2"
CDS 6713..7492
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB86937.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGRFTSTAPVRQADFQHTQSRPSSGSSVSSFTTQSSRPTLTTTT
GSSHGTVSSNLTRSTNLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgccaaca gcaacaacga
61 catcgcaaaa tcttcaagtg acggtatgct ttctaacatg gctgtcactt ttaaacgggc
121 cctcggggcg cggcctaaac agccgccccc gaaggaaata ccacccagac ccccacgacc
181 acccacacca gaattggtta aaaagatccc tcctcctcca cccaacgggg aggatgaact
241 agtggtttct tacagcgcca aagacggcgt ttccggattg cctgagctca ccactgtcag
301 ccaaccggaa gaaaacaaca cggcgttcag tgttccccca ctcaaccaaa gggagaacag
361 ggacgccaag gaaccactaa ctggaacaat cattgaaatg tgggatggag aaatctacca
421 ttacggcctg tacgtagaac ggggtcttat acttggtgtg cataagccac cggcagccat
481 cagccttgcc aaggtcgagc tgacaccact ctctttgttc tggagacctg tgtatacccc
541 ccagtacctc atctctccag acactcttag gagactacat ggagaatcat tcccctacac
601 cgcatttgac aacaattgct acgccttctg ctgttgggta ttagacctaa acgactcatg
661 gttaagtagg agaatgattc agagaacaac aggtttcttc agaccatacc aggaatggaa
721 caggaaaccc ctccccacta tggatgattc caaattgaag aaggtagcca acatattctt
781 gtgcaccttg tcttcactat tcaccagacc cattaaggac ataataggaa aattgaaacc
841 tcttaatatc ctcaatattc tggctacatg tgattggacc ttcccaggca tagtggaatc
901 cctaatactc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcaccccc ttactaggtg attatgaact gcaaggacct gaggaccttg cagtggaact
1021 ggtcccagtg gtgatggggg ggataggttt ggtgctagga tttaccaaag agaaaattgg
1081 aaagatgctg tcgtccgctg catccacttt gagagcttgt aaagaccttg gtgcatacgg
1141 actggaaatt ctgaaattag tcatgaaatg gttcttccca aagaaagagg aagcaaatga
1201 actggctatg gtgagatcca tcgaggacgc agtgctggac ctcgaggcaa ttgaaaacaa
1261 ccacatgacc accttgctca aagacaaaga cagcttggca acctacatga gaacccttga
1321 ccttgaggag gagaaagcta gaaaactctc aaccaaatct gcttcacctg atattgtggg
1381 cacaatcaac gctctcctgg cacgaatcgc cgctgcacgc tccctagtgc atcgggcgaa
1441 agaagaactc tccagcaggc tgagacctgt cgttgtgatg atatcgggaa aaccagggat
1501 agggaaaact caccttgcta gggagttggc caagaggatc gcagcctctc tcacagggga
1561 ccagcgtgtg ggtctgatcc cacgcaatgg cgtcgaccac tgggacgcat acaagggtga
1621 aagagttgtc ctatgggacg actatgggat gagcaacccc atacacgatg ccctcaggtt
1681 gcaggaactt gctgacactt gccccctcac gctaaattgt gacaggattg agaacaaagg
1741 aaaagtcttt gacagtgatg ccataattat caccaccaat ttggccaacc cagcaccact
1801 ggattatgtc aattttgaag catgctcgag gcgcattgac ttcctcgtgt acgcggaagc
1861 tcctgaggtg gaaaaggcga aacgcgactt cccaggccaa cctgacatgt ggaagaacgc
1921 tttcagtcct gacttctcac acataaaact ggcattggct ccacagggtg gttttgacaa
1981 gaacggcaac accccgcatg gaaaaggtgt catgaaaacc ctcaccactg gctccctcat
2041 cgcccgagca tcaggattac tccatgagag gctagatgaa tatgaattac aaggcccagc
2101 cctcaccact tttaactttg accgcaacaa gatacttgcg tttagacagc ttgctgctga
2161 aaacaagtac gggctaatgg acacaatgag agttggaaaa cagctcaagg atgtcaagac
2221 catgccagac ctcaaacaag cactcaagaa tgtcgcgatc aagaagtgcc agatagtgta
2281 cagtggtagc acctacacac ttgaggccga tggcaagggt agtgtgaaag ttgataaagt
2341 gcaaagtgcc accgtgcaaa ccaacaatga actagctggc gccctacacc acctaaggtg
2401 cgccagaatc agatactatg ttaagtgtgt ccaggaggca ctgtattcca tcatccaaat
2461 cgctggggct gcgttcgtca ccacgcgcat cgccaagcga atgaacatac aaaatctctg
2521 gtccaagcca caggtggaag acacagaaga gacggccagc agagatggtt gcccaaaacc
2581 caaagatgat gaagagttcg tcgtttcatc cgacgacatc aaaactgagg gcaagaaagg
2641 gaaaaacaag tccggccgtg gcaagaagca cacagccttc tcaagcaaag ggctcagtga
2701 tgaggagtac gatgagtaca agaggattag agaagaaagg aatggcaagt actccataga
2761 agagtacctc caggacagag acaagtacta tgaggaggtg gccattgcca gggcaactga
2821 agaggacttc tgtgaagaag aagaggccaa aatccggcag agaattttca gaccaacaag
2881 gaaacaacgt aaagaagaga gggcctctct aggcttgatc acaggctcag aaatcaggaa
2941 gagaaaccca gaagacttca aacccaaggg aaagctgtgg gctgatgatg acagaagtgt
3001 tgactacaac gagaaactca actttgaagc cccaccaagc atttggtcgc ggatagtcaa
3061 ctttggttca ggttggggct tctgggtctc ccccagtttg tttataacat caacccatgt
3121 cataccccaa ggagcaaaag agttctacgg agtccccgtc aaacaaatcc agatacacaa
3181 atcaggtgaa ttctgccgat tgagattccc aaaaccaatc agaactgatg tgacgggtat
3241 gattctggaa gaaggtgcgc cagaaggaac cgtggccaca ctgctcatca agagaccaac
3301 tggagagctc atgcctttgg cagccagaat ggggacccat gcaaccatga agattcaggg
3361 gcgcacagtt ggaggacaaa tgggtatgct cttgacagga tccaacgcca agagtatgga
3421 cttgggcaca acaccaggcg actgcggctg tccctacatc tacaaaagag ggaatgacta
3481 cgtggtcata ggagtccata cagccgctgc ccgcggagga aacactgtca tctgtgccac
3541 ccagggcagt gagggagaag ccacacttga aggaggtgac aacaaaggaa cgtactgtgg
3601 cgcaccaatc ttgggcccag ggagtgctcc gaaactcagt accaagacta agttttggag
3661 atcatccaca acgccactcc caccaggcac ctacgaacca gcctacctcg gtggcaagga
3721 tcccagagtc aaaggtggcc cttcattgca acaagttatg agggaccagc taaagccatt
3781 cacagaaccc agaggcaagc caccaagacc aaatgtgttg gaagctgcca agaaaaccat
3841 cattaatgtt cttgagcaaa caattgaccc accccaaaaa tggtcattcg cgcaagcttg
3901 cgcatccctt gacaaaacca cctccagcgg ccatccgcac cacatacgga aaaatgatta
3961 ctggaatggg gagtccttta caggaaaatt ggcagatcag gcctccaagg ccaacctaat
4021 gtttgaagag ggaaagaaca tgactccagt ctacacaggt gcactaaaag atgaattggt
4081 aaaaactgac aaaatttatg gtaagatcaa gaagaggctc ctgtggggct cggacctggc
4141 gaccatgata cggtgcgccc gagcttttgg aggccttatg gatgaactca aggcacactg
4201 tgtcaccctc cctgtcagag ttggtatgaa catgaatgaa gatggcccca taatctttga
4261 gaagcactcc agatacaggt atcactatga tgctgattac tccaggtggg attcaacaca
4321 acaaagggat gtgctagcag cagcactaga aatcatggtt aagttctctc cagaaccaca
4381 cttggcccag atagttgcag aagacctcct ttcccctagt gtaatggatg tgggtgactt
4441 tcaaatatca ataagtgagg gactcccctc cggggtacct tgcacctccc agtggaattc
4501 catcgcccac tggctcctca ccctttgtgc actctctgaa gtcacggacc tgtcccctga
4561 catcattcag gccaactccc ttttctcctt ctatggtgat gatgagattg tgagtacaga
4621 tataaagttg gacccagaga agctaacagc aaaactcaag gagtacgggc tgaagccaac
4681 ccgccccgat aaaactgaag gaccccttgt tatctccgaa gatctggatg gcctgacatt
4741 cctccggagg actgtgactc gtgacccagc tggctggttt ggaaaattgg aacaaagctc
4801 gattctcagg caaatgtact ggaccagggg tcccaaccat gaagatccat ctgaaacaat
4861 gataccacac tcccaaagac ccatacaatt gatgtccttg ctgggcgagg ctgcactcca
4921 cggcccagca ttttacagca aaattagcaa attggtcatt gcagaattga aggaaggcgg
4981 catggatttc tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctact gatggtgcag ccggcctcgt gccagaaagt aataatgagg
5161 tcatggctct tgaacccgtg gctggtgctg ccttggcagc cccggtcact ggtcaaacaa
5221 atattataga cccttggatt agagcaaatt ttgtccaggc ccctaatggt gaatttacag
5281 tttccccccg taatgcccct ggtgaagtgc ttttgaatct agagttgggt ccagagttaa
5341 atccttacct ggcacattta gcaagaatgt acaatgggta tgccggtggg atggaggtgc
5401 aggtcatgtt ggctgggaac gcgttcacag ccggtaagtt ggtcttcgcc gccgtgccac
5461 ctcacttccc gattgaaagc ctaagtccac agcaaattac catgtttccc catgtgatta
5521 tagatgtgag aactttggaa cctgttttat taccactccc tgatgtcaga aataatttct
5581 ttcattataa tcagaaagat gatcccaaga tgagaattgt ggctatgctt tatacccccc
5641 ttaggtctaa tggctcaggt gatgatgtgt ttacagtctc atgcagggtg ttgactagac
5701 cctcccctga ttttgatttt acatatttgg tgccaccaac agtggaatct aaaacaaagc
5761 cattcaccct cccaatcctc acgcttgggg aactctccaa ttctagattt ccagtgtcca
5821 tagaccagat gtacaccagc cccaatgaag ttatatcagt gcaatgtcaa aatggtaggt
5881 gcacactaga tggggaactc caaggaacaa cacaacttca agtcagtggc atttgtgctt
5941 tcaagggaga ggtgaccgcc cacttgcatg acaatgacca cctatataat gtcaccatca
6001 caaacttgaa cgggtcccct tttgacccct ccgaggacat ccctgcccct ctgggtgtac
6061 ctgattttca gggaagggtc tttggtatca tctcccagag agacaaacat aacagtcctg
6121 gacataatga accagcaaac aggggacacg acgccgtggt ccctacttac acagcacagt
6181 acaccccaaa attgggtcaa attcaaattg gcacatggca gaccgatgat cttacagtca
6241 accaaccagc caagtttacc ccagttggac tcaatgacac tgaacatttt aaccaatggg
6301 tggtccccag atatgctggt gctctaaatc tcaatacaaa tcttgcccct tctgttgctc
6361 cagtgttccc aggggagcgc ctgctctttt tcagatcata tattcccctc aagggtggtt
6421 atggaaatcc agttattgat tgcctgctac cacaagagtg ggtgcaacat ttctatcagg
6481 aagcagcccc tgcaatgagt gaggtggccc ttgtcaggta catcaacccg gacactggtc
6541 gagcactgtt tgaggccaag ctccacagag ctggtttcat gacggtctcg agcaacacca
6601 gtgccccggt ggtcgtgcct gcaaacggat acttcagatt tgattcttgg gtgaatcaat
6661 tctattctct cgcccccatg ggaactggaa atgggcgtag aagggttcaa taatggctgg
6721 agcttttgta gctggtcttg caggggacgt gctcagcaat gggctcagtt cactaattaa
6781 tgcaggtgct aatgcaataa atcagagggc agaatttgat tttaatcaga gattacagca
6841 aaattctttc aatcatgata aggagatgtt acaggctcag attcaggcaa ctaagcagct
6901 gcaggcagac atgatggcta taaagcaggg ggtcttgacc gctggcggct tctcccctgc
6961 tgacgcagcc agaggtgctg tgaatgcgcc catgacacag gcgctagatt ggaacggcac
7021 caggtattgg gcaccaggct ccatgaggac cacatcttac tctggaagat ttacatcaac
7081 cgccccagtg aggcaggccg acttccagca tacccagagc cggccttcga gtggctcttc
7141 tgtgtcctcc ttcactactc agtcttcaag gccaactctg actacaacta ctgggtcctc
7201 acatggcaca gtttcatcaa atttgactcg cagcacaaac ctctcccaat caacagtttc
7261 tagggccaca tctaggacag gtgagtgggt tagagatcaa aatagaaatt tggaacctta
7321 catgcatggt gccttacaga cagcctttgt caccccacct tccagcaggg cgtctgatgg
7381 gacagtctca accgtcccaa aaggtgtttt ggactcctgg acacctgcgt tcaacacccg
7441 caggcagccg ctttttgcac acctccgtaa gaggggggag tcacaagcct agtgaaaagg
7501 tgaaaattta tttaaaatga attgatttta tctttt
//