Typing tool
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Typing tool
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Complete norovirus genomes
| LC209436 | GII.2 | |
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| GII.P2 |
ORF1: 1..5094
ORF2: 5075..6703
ORF3: 6703..7482
LOCUS LC209436 7526 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2004/GII.P2_GII.2/Tochigi-85 RNA, nearly
complete genome.
ACCESSION LC209436
VERSION LC209436.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2004/GII.P2_GII.2/Tochigi-85
ORGANISM Norovirus Hu/GII/JP/2004/GII.P2_GII.2/Tochigi-85
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7526)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7526
/organism="Norovirus
Hu/GII/JP/2004/GII.P2_GII.2/Tochigi-85"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2004/GII.P2_GII.2/Tochigi-85"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934262"
/country="Japan: Tochigi"
/collection_date="2004"
/note="genotype: GII.P2_GII.2"
gene <1..5094
/gene="POL"
CDS <1..5094
/gene="POL"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="BBB86926.1"
/translation="MASNDASAAAAVNSNNDNTKSSSDGMFNNVAVTLKRALGARSKQ
PAPREKPPRPPRPPTPELIKRIPPPPPNDGDEPTVMFSTVGGVSGLPELTTVGQPPEA
NTAFSVPPLSQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISIA
KVELTPLSLYWRPVYTPQYLISPDTLRKLHGELFPYTAFENNCYAFCCWVLDLNDSWL
SRRMISRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDIIGKLK
PLNILNILASCDWTFAGIVESLIFLAELFDVFWTPPDVSAMIAPLLGDYELQGPEDIA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
DEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKNSLAAYMKTLDMEEEKARKLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGKPGIGKTHLARELAK
KIASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLVNPAPLDYVNFEACSRRIDFLVYADAPEVEKAK
RDFPGQPDMWKDAYRPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTASSLVARASG
LLHERLDEYELQGPPLSTFNFDRNKIAAFRQLAAENKYGLVDTMRVGNHLRNVTTMDE
LKKAIKNIIIRKCQIVYGGNTYTLESDGKGKVVVERVQSASVQINNEIAGAVHHLRCA
RIRYYVKCVQEAIYSLLQIAGTVFVTSRIISRMNIQNLWSRPLTEDADEATMKEGCPK
PREEEEFVVSSDDIKPEGKKGKNKSGRGKKHTAFSSKGLSDEEYEEYKRIREERNGKY
SIEEYLQDRDKYYEEVAIARATEEDFCEEEEVKIRQRIFRPTRKQRKEERANLGLVTG
SEIRKRNPDDFKPKGKLWADDDRSVDYNERISFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPQGITEAFGVPIRQVQIHKSGEFCRLRFPKPIRTDVSGMILEEGAPEGTV
ATILIKRTTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPG
NAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPKPSVLEAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGYPHHVRKNEHWNG
ESFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKVYGKIKKRLLWGSDLAT
MVRCARSFGGLMDELKAHCVTLPVRVGMNMNEDGPIVFEKHSRYRYHYDADYSRWDST
QQRAVLAAAMEIMVKFSAEPQLAQIVAEDLLSPSVVDVGDFKISINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTDLSPDIVQANSLFSFYGDDEIVSTDIKLDPEKLTGKLREY
GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQLYWTKGPNH
EDPFESMIPHSQRPIQLMSLLGEAALHEPSFYSKISKLVISELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSLVNEDGVE"
gene 5075..6703
/gene="VP1"
CDS 5075..6703
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB86927.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGHAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
VISQRDKHNSPGHNEPANRGHDAVVPTYTSQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6703..7482
/gene="VP2"
CDS 6703..7482
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB86928.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRNTNLPQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPPS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 atggcgtcta acgacgcttc tgctgccgct gctgttaaca gcaacaacga caacacaaaa
61 tcttcaagtg acggaatgtt taacaacgtg gccgtcaccc ttaaacgagc cctcggggcc
121 cggtccaaac agccggcccc gagggaaaaa cccccaagac cccctagacc accaacacca
181 gaactaatca aaagaattcc ccccccacca cccaatgatg gggacgaacc aaccgtgatg
241 tttagcactg taggtggtgt gtctggccta cctgagctca caacagtcgg tcaaccacct
301 gaagctaaca cggcctttag tgtgcccccc ctcagccaaa gggaaaacag ggacgctaag
361 gaaccgctaa ctggaactat tctggaaatg tgggatgggg agatctatca ttatggactg
421 tatgtggaaa gagggcttgt gttaggcgtg cacaagccgc cagctgccat cagcatagcc
481 aaagtggaat taacgcccct ctcactgtat tggagacctg tgtacacgcc tcagtacctt
541 atatcccctg acaccttgag gaaactccat ggtgaattgt ttccctatac agcctttgaa
601 aacaattgtt atgccttctg ctgttgggtt ttggatctta acgattcatg gctaagcagg
661 aggatgatta gtaggaccac tggctttttc aggccctacc aagagtggaa caggaagccc
721 cttccaacta tggatgactc aaaattgaag aaggtcgcaa acatcgttct gtgtgcattg
781 tcatcattgt tcactagacc catcaaggat ataattggca aacttaaacc cctcaacatc
841 ctaaacattc tggcctcatg cgattggact ttcgctggca tagtagagtc actaatcttc
901 ttggctgaac tctttgatgt gttctggaca cccccagatg tgtctgcaat gatcgcaccc
961 ctcctcggtg actacgagct acaaggcccc gaagacatcg ctgtggagct cgtgcccgtt
1021 gtgatgggtg ggataggtct ggtgttggga ttcaccaaag agaaaatagg taagatgctc
1081 tcctctgcag cgtcaaccct gagggcatgc aaagatcttg gagcctatgg attggagatc
1141 ttgaaactag tcatgaaatg gtttttccca aagaaggatg aggccaacga actggctatg
1201 gttagagcca ttgaagacgc tgtattagac ctggaggcca ttgagaacaa ccatatgacc
1261 actctattga aagacaagaa cagccttgca gcctacatga agaccttgga catggaagag
1321 gaaaaagcta ggaagttatc caccaaatca gcctcccctg acattgtggg caccataaac
1381 gccctgctgg ctaggatcgc cgccgcgcgt tccttagttc atagggccaa ggaggagctc
1441 tctagcagac caagaccggt cgttctgatg atctctggca aaccagggat aggaaagacc
1501 cacttggcca gagaactggc aaagaaaatt gcctcgacgc tcacaggaga tcagagggtg
1561 ggcctcatcc cacgtaatgg agttgaccac tgggacgcct acaaaggtga gagagtggtg
1621 ctctgggatg actacgggat gagcaacccc atccacgatg cgctgaggtt gcaggagctg
1681 gcagacacat gtccattaac tttaaattgt gacaggattg aaaacaaggg gaaagtcttc
1741 gatagcgacg cgatcataat taccaccaat ttggtcaatc ccgcgccgct ggattacgtc
1801 aactttgagg cctgctccag acgtatagac ttccttgtgt atgctgatgc cccagaagtc
1861 gagaaggcaa agcgggactt ccctggtcaa ccggacatgt ggaaggacgc ctatcgccct
1921 gacttctcac acattaaact acaacttgca ccacagggtg ggtttgacaa aaatggaaac
1981 accccacatg gtaaaggagt gatgaagact ctcactgcca gttcattggt tgcacgtgcc
2041 tctggtctct tgcacgagag attagatgag tacgagctac agggtccgcc cctctcaacc
2101 ttcaactttg accgtaacaa aattgcagcg ttcaggcaac tcgccgctga aaataagtat
2161 ggtctggtgg acacgatgag ggtgggcaac catctcagaa atgttacgac catggatgaa
2221 ctgaagaagg ctatcaagaa catcataatc agaaagtgcc agatagtcta cggtggtaac
2281 acttacacac ttgagtctga cggcaagggt aaggttgtgg ttgagagggt gcagagcgcc
2341 agcgtgcaaa tcaacaatga gatcgctggt gcagtacacc accttagatg tgccaggata
2401 aggtattatg tcaagtgtgt ccaagaggcc atctactcac tcctccaaat cgccggcacg
2461 gtgtttgtca cttcacgcat cataagccgc atgaacatcc aaaatttatg gtccaggcca
2521 ctaaccgaag atgcagatga ggccactatg aaagaggggt gccccaaacc tagggaggaa
2581 gaggaatttg tcgtctcctc agatgacatc aagccagagg gcaagaaagg taaaaacaag
2641 agtggccggg gcaagaaaca cacggcattc tcaagcaaag gtctcagtga tgaggagtac
2701 gaagagtaca aaaggatcag agaggagaga aatggcaagt actccataga ggaataccta
2761 caggacagag acaaatacta tgaagaggtg gccattgcca gggcaactga agaagacttc
2821 tgtgaagagg aagaggttaa gattcgtcag aggatcttca ggccaacaag aaaacaacgc
2881 aaggaagaaa gagccaacct tggcctcgtt accgggtctg agatcagaaa gaggaaccca
2941 gatgacttca aaccaaaagg aaagctgtgg gccgacgatg ataggagcgt cgactacaat
3001 gaaagaatca gctttgaggc cccaccaagt atatggtcta gaattgtcaa ctttggttct
3061 ggatgggggt tttgggtgtc acctagcctc ttcataacat caacacatgt catacctcaa
3121 ggcataactg aggcctttgg tgtacctata aggcaggtgc aaatacacaa atcaggcgaa
3181 ttctgtcgcc tgagattccc aaaacccatc aggacagatg tgtcaggtat gatactggag
3241 gagggagcgc ctgaaggcac tgttgccacc atactcatca aaagaaccac tggagagctg
3301 atgcctctcg cagcaagaat gggcacccac gcgaccatga gaatacaagg acgcacggtg
3361 ggcggccaga tgggaatgct gctcactggg tccaatgcaa agagcatgga tcttggcacc
3421 acgcccggtg attgtgggtg tccctacatt tacaaaaggg gcaacgacta catagtcatt
3481 ggagttcaca cagcagccgc tcgtggcgga aacactgtca tctgcgccac acagggtagt
3541 gagggtgagg ccacgctcga gggtggtgac aacaaaggaa catactgtgg ggcgccaatc
3601 ctaggccccg ggaatgcccc aaaactgagc accaaaacca aattctggag gtcctccaca
3661 acaccacttc cacccggcac atacgagccg gcatatctgg gaggaaaaga cccccgagtc
3721 aaaggtgggc catctctgca acaagttatg cgagaccaac tgaagccatt caccgaaccc
3781 cgtggtaagc caccaaaacc aagtgtcctc gaagctgcta aaaagacaat tatcaatgtg
3841 ctagagcaaa caatagaccc cccacaaaag tggacgtacg cacaagcgtg cgcgtctctt
3901 gacaaaacta catctagtgg gtacccccac cacgtgcgca aaaacgagca ctggaatggg
3961 gaatctttca caggaaaatt ggctgaccag gcatcaaaag caaacctaat gtttgaagag
4021 gggaagcaca tgaccccagt ttacacagct gcccttaagg atgaattggt caaaactgag
4081 aaagtgtatg ggaagataaa gaagaggttg ctttggggct ctgacctggc taccatggtg
4141 cggtgcgcgc gctcctttgg cggtttgatg gacgaactca aggcccactg tgtgacactt
4201 ccggtaaggg ttggcatgaa tatgaatgaa gatggaccaa tagtctttga gaagcactcc
4261 agatacaggt atcactatga tgcagattat tccaggtggg attcaacaca gcagagagcc
4321 gttctggccg cggccatgga gattatggtt aaattctcag cagagccaca actagcccaa
4381 atagttgcag aggatctatt gtcgcctagc gtagttgacg tgggcgactt caaaatttcc
4441 atcaacgaag gattgccatc gggtgtccct tgcacctctc aatggaattc catcgcacac
4501 tggctcctca ccttatgtgc cctttctgaa gttacagacc tctctcctga cattgtgcag
4561 gccaactccc tcttctcctt ttatggtgat gatgaaattg tgagcacaga tatcaaatta
4621 gacccagaaa agctgacggg gaagttgaga gaatatggcc tcaaacccac tcgtccagac
4681 aaaactgaag gccccctgat cattagtgag gatctgaatg gcctgacttt cctgaggaga
4741 accgtcactc gcgaccctgc aggatggttt ggcaaactgg accaaagttc catacttagg
4801 caattgtatt ggaccaaagg ccccaatcat gaagatccct ttgagtcaat gattccacac
4861 tcccagagac ccatacaact catgtcactc ttgggcgaag cagcactgca tgaaccatca
4921 ttctacagca agatcagcaa gcttgtgata tctgagttga aagaaggtgg aatggatttt
4981 tacgtgccca ggcaagaacc tatgttcagg tggatgagat tctcagattt gagcacgtgg
5041 gagggcgatc gcaatcttgc tcccagtctt gtgaatgaag atggcgtcga atgacgccgc
5101 tccatctact gatggtgcag ccggcctcgt gccagaaagt aataatgagg tcatggctct
5161 tgaacccgtg gctggcgccg ccttggcagc cccggtcacc ggtcaaacaa atattataga
5221 cccttggatt agagcaaatt ttgtccaggc ccctaatggt gaatttacag tctctccccg
5281 taatgcccct ggtgaagtgc tattgaatct agagttgggt ccagaattaa atccttatct
5341 ggcacattta gcaagaatgt acaacgggca tgccggtggg atggaggtgc aggtcatgtt
5401 ggctgggaac gcgttcacag ccggcaagtt ggtcttcgcc gctgtgccac ctcacttccc
5461 ggttgaaaac cttagtccac agcaaattac catgttccct catgtgatta tagatgtaag
5521 gactttggaa cctgttttat taccactccc tgatgttaga aataatttct tccattataa
5581 tcagaaagat gatcccaaga tgagaattgt agctatgctt tatacccccc ttaggtctaa
5641 tggttcaggt gatgatgtgt ttacagtctc ctgcagggtg ttgactagac cctcccctga
5701 ttttgatttc acatatctgg tgccaccaac agtggagtct aaaacaaaac catttaccct
5761 cccaatcctc acacttgggg aactttccaa ttctagattc ccagtgtcca tagaccagat
5821 gtacaccagc cccaatgaag ttatatcagt gcagtgtcaa aatggtaggt gcacactgga
5881 tggggagctc caaggaacaa cccaactcca agtcagtggc atttgtgctt tcaagggaga
5941 agtgaccgcc catttgcatg acaatgatca tctatataat gtcaccatca caaacttgaa
6001 tgggtccccc tttgacccct ccgaggacat ccctgcccct ctgggcgtac ctgactttca
6061 gggaagggtc tttggtgtca tctcccaaag agacaaacac aattcccctg gacataatga
6121 accagcaaat agggggcacg acgctgtggt ccctacttac acatcacagt acactccaaa
6181 attgggtcag attcaaattg gcacatggca aaccgatgat cttacagtca accaaccagt
6241 caaattcacc ccagttggac tcaatgacac tgaacatttt aaccaatggg tggtccccag
6301 atatgctggt gctctaaacc ttaacacaaa ccttgcccct tctgttgctc cagtatttcc
6361 aggggagcgc ctgctctttt tcagatcata catccccctc aagggtggtt atggaaatcc
6421 agccattgat tgcctactac cacaagagtg ggtgcagcat ttctatcagg aagcagcccc
6481 ttcaatgagt gaggtggccc ttgtcagata catcaacccg gatactggtc gggcactgtt
6541 tgaggccaaa ctccacagag ctggtttcat gacagtctca agcaacacca gtgccccggt
6601 ggttgtgcct gccaacggat acttcagatt tgattcttgg gtgaaccaat tctattctct
6661 cgcccccatg ggaactggaa atgggcgtag aagggttcaa taatggctgg agcttttgta
6721 gctggtcttg caggggacgt gctcagcaat gggctcagtt cattaattaa tgcaggtgct
6781 aatgcaataa atcagagggc agaatttgat tttaatcaga gattacagca aaattctttt
6841 aatcatgata aggagatgtt gcaggctcag attcaggcaa ctaagcagct gcaggcagac
6901 atgatggcta taaagcaggg ggtcctgacc gctggcggct tttcccctgc tgacgcagcc
6961 agaggtgctg tgaatgcgcc catgacacag gcgctggatt ggaacggcac aaggtattgg
7021 gcaccaggct ccatgaggac cacatcttac tctggaaaat tcacatcaac cgccccagtg
7081 aggcaggccg acttccagca cacccaaagc cggccctcga gtggctcttc tgtgtcctcc
7141 tttgctactc agtcttcaag gccaactctg actacaacca ctgggtcctc acatggcaca
7201 gcctcatcaa actcgactcg caacacaaac ctcccccaat caacggtctc tagggccaca
7261 tctaggactg gtgagtgggt tagagatcaa aatagaaatt tggaacccta tatgcatggt
7321 gccttacaga cagcctttgt caccccacct cccagcaggg cgtctgacgg aacggtctca
7381 accgtcccaa aaggtgtttt ggactcctgg acacctgcgt tcaacacccg caggcagccg
7441 ctttttgcac acctccgtaa gaggggggag tcacaagctt agtgaaaagg tgaaaattta
7501 tctaaaatga attgatctta cctttt
//