Typing tool
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Typing tool
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Complete norovirus genomes
| LC209435 | GII.2 | |
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| GII.P12 |
ORF1: 1..5099
ORF2: 5080..6708
ORF3: 6708..7487
LOCUS LC209435 7530 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2004/GII.P12_GII.2/Tochigi-92 RNA, nearly
complete genome.
ACCESSION LC209435
VERSION LC209435.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2004/GII.P12_GII.2/Tochigi-92
ORGANISM Norovirus Hu/GII/JP/2004/GII.P12_GII.2/Tochigi-92
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7530)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7530
/organism="Norovirus
Hu/GII/JP/2004/GII.P12_GII.2/Tochigi-92"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2004/GII.P12_GII.2/Tochigi-92"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934261"
/country="Japan: Tochigi"
/collection_date="2004"
/note="genotype: GII.P12_GII.2"
gene <1..5099
/gene="POL"
CDS <1..5099
/gene="POL"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="BBB86923.1"
/translation="KMASNDASAAAAANSNNDIAKSSSDGVLSSMAVTFKRALGARPK
QPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEPVVSYSVKDGVSGLPELITVRQPDV
VNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISL
AKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANVFLCALSSLFTRPIKDIIGKL
RPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELA
KRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEKA
KRDFPGQPDMWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTMP
ELKQALKNISIKRCQIVYSGCTYTLESDGKGDVKVDRVQSATVQTNNELAGALHHLRC
ARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETTNKDGCP
EPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVT
GSEIRKRNPDDFKPKGKLWADDDRSVDYNERINFEAPPSIWSRIVNFGSGWGFWVSPS
LFITSTHVIPHGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGT
VATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP
GSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWN
GESFTGKLADQASKANLMYEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLA
TMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDVKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN
HEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5080..6708
/gene="VP1"
CDS 5080..6708
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB86924.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLSLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDVPAPLGVPDFQGRVFG
VISQRDKQNAAGHNEPANRGHDAVVPTYTAQYTPKLGQVQIGTWQTDDLQVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6708..7487
/gene="VP2"
CDS 6708..7487
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB86925.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGRFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLITTT
GSPHGTTSSNSTRSTNLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASGGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 tgaagatggc gtctaacgac gcttccgctg ccgctgctgc caacagcaac aacgacatcg
61 caaaatcttc aagtgacgga gtgctttcta gcatggctgt cacttttaaa cgagccctcg
121 gggcgcggcc taaacagcct cccccgaggg aaataccaca gagaccccca cgaccaccca
181 caccagaact ggtcaaaaag atccctcctc ccccgcccaa cggggaggat gaaccagtgg
241 tttcttatag cgtcaaagat ggtgtttccg gcttgcctga gctcatcact gtcaggcagc
301 cggatgtagt caacacggcg ttcagtgttc ccccactcaa ccaaagggag aatagggacg
361 ccaaggaacc actaactgga acaattctgg aaatgtggga cggggagatc taccattacg
421 gcctgtatgt ggaacgaggt ctagtacttg gcgtgcacaa accaccggct gccatcagcc
481 tcgccaaggt tgaactaaca ccactctctc tgttttggag gccagtgtac acacctcagt
541 atctcatttc tccagacact cttaggaggc tgcacggaga gtcgttcccc tatacggcct
601 ttgacaacaa ttgctatgcc ttctgttgtt gggtcctgga cctaaacgac tcgtggttaa
661 gtaggagaat gattcagaga acaactggtt tctttaggcc ctaccaggaa tggaatagga
721 agccccttcc taccatggat gattccaagt tgaagaaggt agctaacgtg ttcctgtgcg
781 cgctttcttc actattcacc aggcccatca aagacataat agggaagttg agacctctca
841 acatccttaa catcttggcc tcatgtgatt ggacttttgc aggcatagtg gaatccttga
901 tactcttggc agagctcttt ggagttttct ggacaccccc agatgtgtct gcgatgatcg
961 cccccttgct gggtgactac gagctgcagg ggcctgagga ccttgcagtg gaactcgtcc
1021 caatagtgat gggggggatt ggtttggtgc taggatttac caaagagaag attgggaaaa
1081 tgttgtcatc tgctgcatcc accttaagag cttgcaaaga ccttggtgca tacgggctgg
1141 aaatcttgaa attagtcatg aagtggttct tcccaaagaa agaggaagca aatgagctgg
1201 ctatggtgag atccatcgag gacgcggtgc tggacctcga ggcaattgag aacaaccaca
1261 tgactgccct tcttaaagac aaagatagct tggcaaccta catgagaacc ctcgacctcg
1321 aggaggagaa ggccaggaag ctctcaacca agtctgcttc acctgatatc gtgggtacaa
1381 tcaatgctct tctggcgaga atcgccgctg cgcgctccct ggtgcatcgg gcgaaggagg
1441 agctctctag cagaccaaga cctgttgttg tgatgatatc aggcagacca gggataggga
1501 aaacccacct tgccagggaa ttggccaaga gaattgcagc ttccctcaca ggggaccagc
1561 gtgtgggtct catccctcgc aatggcgttg accattggga cgcatacaag ggagaaagag
1621 tcgtcctgtg ggacgattat ggaatgagca atcccatcca tgatgccctc agattgcaag
1681 aacttgctga cacctgcccc ctcacgctaa attgtgacag gattgagaat aaaggaaagg
1741 tatttgacag tgatgccata atcatcacca ctaacctggc caacccagca ccactggact
1801 atgttaactt tgaagcatgc tcgaggcgca ttgacttcct cgtgtatgca gatgcccctg
1861 aggtcgaaaa ggcaaaacgt gacttcccag gtcaacctga catgtggaag aacgctttta
1921 gtcccgactt ctcacacata aaactgacgc tggctccgca gggaggcttc gacaagaatg
1981 gaaacacccc acatgggaaa ggcgtcatga aaactctcac cactggctct ctcatcgccc
2041 gagcatcagg gctactccat gagaggttgg atgagtacga gctgcagggc ccaaccccca
2101 ccaccttcaa cttcgaccgc aacaaggtgc ttgcttttag acagcttgct gctgaaaaca
2161 agtacgggtt aatggacaca atgagagttg gtagacaact caaggatgtc aggaccatgc
2221 cagagctcaa acaggcactc aagaatatct caatcaagag gtgtcagata gtgtacagtg
2281 gctgcaccta cacgcttgaa tctgatggca agggtgacgt gaaagttgat agagttcaga
2341 gcgccactgt gcagaccaac aatgagctgg ctggcgccct acaccatcta aggtgtgcca
2401 gaattagata ctatgtcaag tgtgttcagg aggccctgta ctccatcatc caaattgctg
2461 gtgctgcatt tgtcaccacg cgcatcgtca agcgcatgaa catacaagac ctttggtcca
2521 aaccacaggt tgaagataca gaggagacta ccaacaagga tgggtgccca gaacccaaag
2581 atgatgaaga gtttgtcgtc tcatccgacg acatcaaaac tgagggcaag aaagggaaga
2641 acaaatctgg ccgtggcaag aagcacacag cattctcaag taaaggtctc agtgatgaag
2701 agtacgatga gtacaagaga atcagagaag aaagaaacgg caaatactcc atagaagagt
2761 accttcagga cagagacaag tattatgagg aggtggccat cgccagggcg accgaagagg
2821 acttctgtga ggaagaagaa gccaagatcc gacaaaggat tttcaggcca acaaggaaac
2881 aacgcaagga ggagagagcc tccctcggcc tggtcacagg ctctgaaatc agaaaaagaa
2941 acccagacga tttcaagcct aaagggaagc tgtgggctga tgacgacagg agtgttgact
3001 acaacgagag aatcaatttt gaagccccac cgagcatctg gtcgaggata gtcaactttg
3061 gctcaggttg gggcttttgg gtctccccca gtctgttcat aacatcaact catgtcatac
3121 cccatggcgc acaggagttc tttggagttt ctatcaaaca gattcagata cacaaatcgg
3181 gtgaattctg tcgcttgagg tttccaaaac caatcaggac tgatgtgaca ggcatgatct
3241 tagaagaagg tgcgcccgaa gggaccgtgg ccacattact catcaagagg ccaactggag
3301 aactcatgcc cttggcggcc agaatgggaa cccatgcaac catgaagatc caagggcgca
3361 ccgttggagg tcaaatgggc atgcttctaa caggatccaa cgccaagagt atggatctgg
3421 gcaccacacc gggtgactgt ggttgtccct acatttacaa gagggggaat gactacgtag
3481 tcattggagt ccacacggct gccgcccgtg gaggaaacac tgtcatatgt gccacccagg
3541 ggagtgaggg agaagccaca cttgaaggtg gtgacaacaa gggaacttac tgtggtgcac
3601 caatcttagg tccaggtagt gccccaaaac tcagtaccaa gactaaattt tggagatcat
3661 ccacagcacc actcccacct ggtacctatg aaccagccta ccttggcggc aaagacccca
3721 gagtcaaggg tggtccttca ttgcaacaag ttatgaggga ccagctgaaa ccatttactg
3781 agcccagggg caaaccacca aaaccaagtg tgttagaggc tgccaagaaa accatcatca
3841 atgttcttga gcaaacaatt gatccacctc aaaaatggtc attcgcgcaa gcatgcgcgt
3901 ccctcgacaa gaccacctct agtggccacc cgcaccacat gcggaaaaac gactgctgga
3961 acggggagtc cttcacaggc aaattggcag accaggcttc caaggctaac ctgatgtacg
4021 aagagggaaa gaacatgact ccagtttaca cgggtgcgct taaggacgag ctggtcaaga
4081 ctgacaaaat ttatggcaaa atcaaaaaga ggcttctctg gggttcggac ctggcgacca
4141 tgatccggtg cgctcgggct tttgggggcc tgatggatga acttaaagca cattgtgtca
4201 cactccccgt cagagtgggt atgaatatga atgaggatgg tcctatcatc tttgaaagac
4261 actccagata taaatatcac tatgatgctg attactctcg gtgggactca acacaacagc
4321 gggccgtact agcagcagcc ttagaaatca tggttaagtt ctccccagaa cctcacctgg
4381 cccaaaaggt tgcagaagac ctgctctccc ccagcgtgat ggatgtaggt gattttaaaa
4441 tatcaattaa tgagggcctc ccctccgggg taccctgcac ctcccaatgg aattccatcg
4501 cccactggct cctcaccctc tgtgcacttt ctgaggtcac aaacctgtcc cctgacatca
4561 tccaggccaa ttccctcttt tccttctatg gtgatgatga aattgtgagc acagacgtaa
4621 agctggaccc agagaagctg acagcaaaac tcaaggaata cgggctgaaa ccaacccgcc
4681 ctgacaagac tgaggggccc cttgttatct ctgaggacct gaatggcttg accttcctgc
4741 ggaggactgt aacccgcgat ccagctggct ggtttggaaa actggaacag agttcaatac
4801 ttaggcaaat gtactggact agaggcccta atcatgaaga cccatctgaa acaatgatac
4861 cacactccca aagacccata caattaatgt ctttgctggg cgaggctgcc ctccacggcc
4921 cagcgttcta cagcaaaatc agcaagttag ttattgcaga actaaaggaa ggtggcatgg
4981 atttctacgt gcccagacaa gagccaatgt tcagatggat gagattctca gatctgagca
5041 cgtgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc gtcgaatgac
5101 gccgctccat ctactgatgg tgcagccggc ctcgtgccag aaagtaataa tgaggtcatg
5161 gctcttgaac ctgtggctgg tgccgctttg gcagccccgg tcactggtca aacaaatatt
5221 atagaccctt ggattagagc aaattttgtc caggccccta atggtgaatt tacagtttct
5281 ccccgtaatg cccctggtga agtgctgttg agtctagagt tgggtccaga attaaatcct
5341 tatctggcac acttagcaag aatgtacaac gggtatgccg gtgggatgga ggtgcaggtc
5401 atgttggctg ggaacgcgtt cacagccggc aagttggtct tcgccgctgt gccacctcat
5461 ttcccggttg aaaaccttag tccacagcaa attaccatgt tccctcacgt gattatagat
5521 gtaaggactt tggaacctgt tttattacca ctccctgatg tgcgaaataa tttctttcat
5581 tataatcaga aagatgatcc taaaatgaga attgttgcta tgctttatac cccccttagg
5641 tctaatggtt caggtgatga tgtgtttaca gtctcctgca gggtgttgac tagaccctct
5701 cctgattttg atttcacgta cctggtgcca ccaacagtgg aatccaaaac aaaaccattt
5761 acccttccaa tcctcacact tggggagctt tccaattcta gattcccagt gtctatagat
5821 cagatgtaca ctagccccaa tgaagtcata tctgtgcagt gtcaaaatgg taggtgcaca
5881 ctggatgggg agctccaagg aacaacacaa ctccaggtca gtggcatttg tgctttcaag
5941 ggagaagtta ccgcccactt gcatgacaat gatcacctat ataatgtcac cattacaaac
6001 ttgaatgggt ccccttttga cccctctgag gacgtccccg cccctttggg cgtgcctgac
6061 ttccagggaa gggtctttgg tgtcatctcc caaagagata aacagaatgc cgctggacat
6121 aatgaaccag caaacagggg acacgacgct gtggtcccta cttacacagc acagtacact
6181 ccaaaactgg gtcaagttca aattggcaca tggcagaccg acgatctcca agtcaatcaa
6241 ccagttaaat ttaccccagt cggccttaat gatactgagc attttaatca atgggtggtc
6301 cctaggtatg ctggtgcttt aaatctaaac acaaatcttg ccccttctgt tgctccagtg
6361 tttccagggg agcgcctgct ctttttcaga tcatatatcc ccctcaaggg tggttatgga
6421 aacccagcca ttgattgcct actaccacag gagtgggtgc aacattttta tcaggaagca
6481 gccccttcaa tgagtgaggt ggcccttgtc aggtacatca acccggacac tggtcgggca
6541 ctgtttgagg ccaagctcca tagggctggt ttcatgacgg tctcgagcaa caccagtgct
6601 ccggtggttg tgcctgccaa cggatacttc agatttgact cttgggtaaa ccaattctat
6661 tctctcgccc ccatgggaac tggaaatggg cgtagaaggg ttcaatgatg gctggggctt
6721 ttgtagctgg tcttgcaggg gacgtgctca gcaatgggct tagttcatta attaatgcag
6781 gtgctaatgc aataaatcag agggcagaat tcgattttaa tcagagatta cagcaaaatt
6841 ccttcaatca tgacaaggag atgttgcagg ctcagattca ggcaaccaag cagctgcagg
6901 cagacatgat ggctataaag caaggggtat tgaccgctgg cggcttttcc cctgctgatg
6961 cagccagagg tgctgtgaat gcacccatga cacaggcgct ggactggaac ggcacacggt
7021 attgggcacc aggctccatg aggactacat cttactctgg aagattcaca tcgaccgctc
7081 cggtgaggca agccgatttc caacacaccc aaagccggcc ttcgagtggc tcttctgtgt
7141 cctcctttgc tactcagtct tcaaggccaa ccctgatcac aaccactggg tccccacatg
7201 gtacaacctc atccaattcg actcgtagca caaacctctc ccagtcgacg gtctctaggg
7261 ccacatctag gactagcgag tgggttagag atcaaaatag aaatttggaa ccctatatgc
7321 atggtgcctt acagacagcc tttgtcaccc caccttccag cagggcgtct ggcgggacag
7381 tctcaaccgt cccaaaaggt gttttggact cctggacacc tgcgttcaac acccgcaggc
7441 agccgctttt tgcacacctc cgtaagaggg gggagtcaca agcctagtga aaaggtgaaa
7501 atttgttcaa aatgaattga tcttatcttt
//