Typing tool
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Typing tool
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Complete norovirus genomes
| LC209434 | GII.2 | |
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| GII.P16 |
ORF1: 1..5083
ORF2: 5064..6692
ORF3: 6692..7471
LOCUS LC209434 7515 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2014/GII.P16_GII.2/Tochigi-17 RNA, nearly
complete genome.
ACCESSION LC209434
VERSION LC209434.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2014/GII.P16_GII.2/Tochigi-17
ORGANISM Norovirus Hu/GII/JP/2014/GII.P16_GII.2/Tochigi-17
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7515)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7515
/organism="Norovirus
Hu/GII/JP/2014/GII.P16_GII.2/Tochigi-17"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2014/GII.P16_GII.2/Tochigi-17"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934260"
/country="Japan: Tochigi"
/collection_date="2014"
/note="genotype: GII.P16_GII.2"
gene <1..5083
/gene="POL"
CDS <1..5083
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BBB86920.1"
/translation="SNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPA
PRDNPQKPPRPPTPELVKRIPPPPPNGEEEPVIRFEVKSGISGLPDLTTVPQPDAINT
AFSVPPLSLRENREAKEPLTGAIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMAKV
ELAPLSLYWRVVYTPQYLISPDTLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSR
RMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIGKIKPL
NILNILATCDWTFAGIVESLILFAELFGVYWTPPDVSAMIAPLLGEYELQGPEDIAVE
LVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE
ANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMKTLDLEEEKARKLSTKSAS
PDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVAKKV
ASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTL
NCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD
FPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL
HERMDEFELQGPAITTFNFDRNRVTAFRQLAAENKYGLVDTMRIGNQLKGVKTMEELK
QAIKNVSIKRCQIIYHGSTFDLESDGKGKVTVEKVKNTTVQTNNELAGALHHLRSARI
RYYVKCVQEAIYSILQIAGAAFVTTRIARRMNIQELWSKPPLDQSEPEVKEETPKLED
DEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIR
KRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITS
THVIPSGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVL
IKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYI
YKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPK
LSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPR
PSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNGETFT
GKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMVRC
ARAFGGLMDEMKAHCISLPIRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRA
VLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQWNSI
SHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLREYGLKP
TRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPNHEDPN
ETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5064..6692
/gene="VP1"
CDS 5064..6692
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB86921.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
VISQRDKHNTPGQNEPANRAHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTDHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGTPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VIVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
gene 6692..7471
/gene="VP2"
CDS 6692..7471
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB86922.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQVQATKQLQADMMAIKQGVLAAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTAYSGRFTSTAPVRQTDFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSYGTASSNSTRSTNLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gtctaacgac gctaccgttg ccgttgcttg caacaacaac aacgacaagg aaaaatcttc
61 gggcgaaggc ttatttacaa atatgtcttc caccctaaag aaagccctcg gggctcggcc
121 taaacagcct gccccgaggg acaacccaca aaaaccccca agaccaccaa cgcccgagtt
181 ggttaaaagg ataccccctc ccccacctaa tggcgaagaa gagccagtca ttaggtttga
241 ggtcaagagt ggaatttctg gcctgcccga tctcacgaca gttcctcaac cagatgcgat
301 caatacggca ttcagtgttc caccgttgag cttaagagaa aacagggagg ccaaggaacc
361 gctaactggg gcaataatag agatgtggga tggagagata taccactatg gtttgtatgt
421 ggagaaaggt ctagtcttgg gtgtacacaa accacccgca gctataagca tggcaaaagt
481 ggaattagca ccgctgtcgt tatactggcg tgtggtgtac actccccaat acctcatctc
541 ccctgacact ctcaagaggc tcaacggaga ggcattcccc tacaccgcct ttgataataa
601 ctgttatgcc ttttgctgct gggtgttaga ccttaatgac tcatggctca gcagaagaat
661 ggtgcagaga acgacaggct tcttcagacc ctaccaagag tggaacagaa agcccctacc
721 caccatggat gattccaaaa ttaagaaggt ggcaaacata ttcctatgtt cattgtctac
781 actgttcacc aggcctataa aagacatcat agggaaaatc aaaccactga atatcttaaa
841 cattctggca acgtgtgatt ggacgttcgc cggaatcgta gagtctctaa tattatttgc
901 tgaactcttt ggagtttact ggacaccccc agatgtgtct gctatgatcg ctcccttact
961 tggcgaatac gagttgcagg gaccagaaga catcgccgtt gagctcgtac ctgtagtgat
1021 gggggggatt ggtttggtgt taggattcac caaagagaaa attggcaaaa tgctgtcctc
1081 agcagcgtca acgctcaggg cttgcaaaga ccttggtgcc tatggtttag agatactcaa
1141 attagtcatg aaatggtttt tcccaaagaa agaagaagcc aatgaactag ccatggtgag
1201 agcaatagag gatgctgttc tggatcttga ggcgatagaa aacaatcaca tgacagccct
1261 gctgaaagat aaagacagcc ttgcaaccta catgaaaaca ctggatctag aggaggagaa
1321 agccagaaaa ctgtccacga aatctgcatc tcctgacata gttgggacaa tcaacgccct
1381 actggctcga atagcggcgg ctagatcact agtccacagg gccaaggagg agctatctag
1441 cagaatcaga ccagttgtcg ttatgatatc tggcaagcca gggataggca agacccactt
1501 ggccagggag gtggcgaaaa aggtggcgtc cactctcaca ggagatcaaa gagttggact
1561 cataccgaga aacggtgtgg accattggga tgcatacaaa ggtgaaaggg tcgtgttgtg
1621 ggatgactat ggcatgagca accctattca tgatgcactg cgcatacagg aattggccga
1681 cacatgcccc ctcaccttga attgtgacag aattgaaaat aagggaaaag tttttgatag
1741 tgatgttata ataattacaa caaaccttgc caacccagct cctcttgatt atgtcaactt
1801 tgaagcctgt tccaggagaa ttgacttcct ggtgtacgcc gaagcgccag aagtggaaaa
1861 ggcaaaacgg gatttccctg gtcaaccaga tatgtggaag gacgccttca aagcggactt
1921 ctcgcacatc aagttgcaac ttgcgcctca gggcggcttt gacaagaatg gcaacacccc
1981 acatgggaaa ggagtgatga agacccttac caccggttct ctgatcgccc gtgcgtcagg
2041 tttgctacat gagaggatgg atgaatttga acttcagggc cccgcaatca ccactttcaa
2101 ctttgaccgg aacagagtca ccgctttcag acaactggct gctgagaaca aatatgggct
2161 ggtggacacc atgaggattg gcaatcaatt gaaaggggtg aaaaccatgg aagaactcaa
2221 gcaagctatc aagaatgtgt ccatcaagag gtgccagatt atctaccatg gatccacgtt
2281 tgaccttgag tctgatggca agggtaaagt tacagtagaa aaggtcaaaa acaccactgt
2341 tcagaccaac aacgagttgg ccggagccct gcaccacctc agaagtgctc gaatcaggta
2401 ttatgtcaaa tgtgtgcaag aggcaatcta ttccatccta caaattgccg gcgctgcgtt
2461 cgtcaccaca cgcattgcac gccgcatgaa tatacaagag ctttggtcaa agccaccatt
2521 agaccaaagc gagccagagg ttaaggagga gacccccaag ttagaggatg atgaattcat
2581 catttcctcc aaggacatta aggaggaagg gaagaagggc aaaaacaaaa ctggccgtgg
2641 caagaaacac actgcattct ctagcaaggg cttgagcgat gaggagtacg acgagtacaa
2701 gaggataaga gaagagagaa atgggaagta ctctatagag gagtatcttc aagacaggga
2761 caggtactat gaagaactcg ccatcgccaa ggccacggaa gaagactttt gtgaggagga
2821 agaaataaaa atccgccagc ggatctttcg tcccactaga aaacaaagga aggaagaaag
2881 ggccacgtta gggctagtga ctggttcaga aatcagaaaa agaaaccctg atgacttcaa
2941 acctaaaggg aaattgtggg ccgacgacaa cagaagtgtt gactacaatg aaaaactgga
3001 ctttgaggcc cccccaagca tatggtctag gatcgtaagc tttggttcag gttggggctt
3061 ctgggtgtca ccaagcctgt ttataacatc aactcatgtg atcccttcgg gtataacaga
3121 ggcatttgga gtccccatca aacagattca agtccacaaa tcaggcgaat tttgtcggtt
3181 cagattccca aaaccaatta gaccagatgt aacaggaatg atcctggaag aaggtgcgcc
3241 agagggcacc gtagcaaccg tgctcatcaa gcgccccact ggagaactca tgcccctcgc
3301 agctagaatg ggaacacacg caaccatgaa aattcagggc cgcatggttg gtgggcagat
3361 gggcatgttg ctcactggtt caaatgctaa gggtatggat ctggggacaa ctcccggtga
3421 ctgtggctgc ccgtatattt acaaaagggg caatgactac atagtcattg gagtgcacac
3481 agcagcagcc cgaggtggaa atactgtcat ctgtgccaca cagggaagtg agggcgaggc
3541 gaccctcgag ggtggagacg acaaaggaac atactgtggg gcacccatcc tgggccctgg
3601 aggggcgcca aagttaagca caaaaaccaa attttggagg tcatcaaaca cgccccttcc
3661 accagggaca tatgagcctg cctaccttgg cggtcgtgat ccgcgtgtaa agggtgggcc
3721 ttccctacaa caagtcatga gagatcagtt aaagcccttc accgagccca ggggtaaacc
3781 cccgagacct agtgtgctgg aggcagccaa acagaccatc atcaacgttc tcgagcaaac
3841 tctggatcct ccacaaaaat ggacgtacgc acaggcgtgc gcttcacttg ataaaaccac
3901 ctctagtggg cacccccatc acgctcgaaa gaatgaattc tggaacggtg agacctttac
3961 cggtaagttg gcagaccagg catcaaaagc aaacttaatg tttgaggaag ggaaacatat
4021 gacaccagta tacacagcag cccttaagga tgagttggtt aaaaccgaca aaatctatgg
4081 gaagatcaag aaacgcctgc tttggggctc tgatttatcc accatggtcc gatgtgctag
4141 ggcctttggt ggactcatgg acgagatgaa ggcgcactgc atatcgctcc caatccgagt
4201 tggcatgaat atgaatgagg atggcccaat aatatttgag aagcactcca gatataaata
4261 tcactatgat gcagattact ctcgctggga ctcaacacaa cagagggctg ttctagcagc
4321 ggccttggaa ataatggtca gattctctgc agaaccgcaa ctggcccaaa cagttgctga
4381 ggatctgctg gcccccagtg tagtagatgt cggagacttc aaaatttcaa taaatgaggg
4441 actcccttct ggtgtaccat gcacttccca gtggaactcc atctcacact ggttactaac
4501 tctctgtgct ttgtctgaag tcaccaatct gtctcctgac atcgtgcagg caaattctat
4561 gttctcattt tacggtgatg acgagatcgt cagcaccgat ataaaattgg accctgaaaa
4621 gttaaccacc aaattgaggg agtatggtct aaaaccaact cgcccagaca aaaccgaggg
4681 gcccttgatc atcagtgagg atttggacgg tctcaccttc ctccggagga cggtttctcg
4741 tgacccagcc ggttggtttg gaaagttaga tcagagctca atactaaggc agatgtattg
4801 gaccagagga ccaaaccatg aagaccccaa tgagacaatg ataccccact ctcaaagacc
4861 catacagctc atggcactgc ttggtgaggc ctcccttcac ggaccctctt tctacagcaa
4921 gattagtaaa ttggtcataa ctgaactcaa agaaggtggg atggactttt acgtgccaag
4981 acaggaaccc atgttcagat ggatgaggtt ttctgacttg agcacgtggg agggcgatcg
5041 caatctggct cccagttttg tgaatgaaga tggcgtcgaa tgacgccgct ccatctactg
5101 atggtgcagc cggcctcgtg ccagaaagca ataatgaggt catggctctt gaacccgtgg
5161 ctggtgccgc cttggcagcc ccagtcaccg gtcaaacaaa tataatagac ccttggatta
5221 gagcaaattt tgtccaggcc cccaatggtg aatttacagt ctctccccgt aactcccctg
5281 gtgaagtgct attgaatcta gagttgggtc cagaattaaa tccttatctg gcacatttag
5341 caagaatgta taatgggtat gccggtggga tggaggtgca ggtcatgttg gctgggaacg
5401 cgttcacagc cggcaagtta gtcttcgccg ctgtgccacc ccacttcccg gtcgaaaacc
5461 ttagcccaca gcaaattacc atgttccctc atgtgattat agatgtcagg actttggaac
5521 ctgttttatt accactccct gatgttagaa ataacttctt ccattacaat cagaaagatg
5581 atcccaagat gagaattgtg gctatgcttt atacccccct taggtctaat ggttcaggcg
5641 atgatgtgtt tacagtctcc tgcagggtgt tgactagacc ctcccctgat tttgatttca
5701 catatctggt gccaccaaca gtggaatcta aaacaaaacc attcactctc ccaatcctca
5761 cgcttgggga actttccaat tctagattcc cagtgtccat agaccagatg tacaccagcc
5821 ccaatgaagt catatcagta cagtgtcaaa atggcaggtg cacactggat ggggaactcc
5881 aaggaacaac acaactccaa gtcagtggca tttgtgcttt caagggagaa gtgactgccc
5941 acttgcatga caatgatcac ctgtataatg tcaccatcac aaacttgaat gggtcccctt
6001 ttgacccctc cgaggacatc cccgcccctc tgggcgtacc tgactttcag ggaagggtct
6061 ttggtgtcat ctcccaaaga gacaaacaca atacccctgg acaaaatgaa ccagcaaaca
6121 gggcacacga tgccgtggtc cctacttata cagcacagta taccccaaaa ttgggccaga
6181 ttcaaattgg cacatggcag actgacgatc tcacagtcaa ccaaccagtc aaattcaccc
6241 cagttggact taatgacact gaccatttta atcaatgggt ggtccccagg tatgctggtg
6301 ccctaaacct taacacaaac cttgcccctt ctgttgctcc agtatttcca ggggagcgtc
6361 tgctcttttt cagatcatac atccccctca agggtggcta tggaactcca gccatcgatt
6421 gcctactacc acaagagtgg gtgcaacatt tctatcagga agcagcccct tcgatgagtg
6481 aggtggccct tgtcagatac atcaacccgg atactggtcg ggcactgttt gaggccaaac
6541 tccacagagc tggtttcatg acagtctcaa gcaacaccag tgccccggtg attgtgcctg
6601 ccaacggata cttcaggttt gattcttggg tgaaccaatt ctattctctc gcccccatgg
6661 gaactggaaa tgggcgcaga aggatccaat aatggctgga gcttttgtag ctggtcttgc
6721 aggggacgtg ctcagcaatg ggctcagttc attaattaat gcaggtgcta atgcaataaa
6781 tcagagggca gaatttgatt tcaatcagag attacagcaa aattctttca atcatgataa
6841 ggagatgttg caggcccagg tccaggcaac taagcagctg caggcagata tgatggctat
6901 aaaacagggg gtcctggccg ctggcggctt ttcccctgct gatgcagcca gaggtgctgt
6961 gaacgcgccc atgacacagg cgctggattg gaacggcaca aggtattggg caccaggctc
7021 catgaggact acagcctact ctgggagatt cacatcaacc gccccagtga ggcagaccga
7081 ttttcagcac acccaaagcc ggccttcgag tggttcttct gtgtcctcct ttgctactca
7141 gtcttcaagg ccgaccctga ctacaaccac tgggtcctca tatggcacag cctcatcaaa
7201 ttcgactcgc agcacaaacc tctcccaatc aacggtctcc agggctacat ctaggactgg
7261 tgaatgggtt agagaccaaa acagaaattt ggaaccttat atgcatggtg ccttacagac
7321 agcctttgtc actccacctt ccagcagggc gtctgatggg acggtctcaa ccgttccaaa
7381 aggtgttttg gactcctgga cacctgcgtt taacacccgc aggcagccgc ttttcgcaca
7441 cctccgtaag aggggggagt cacaagctta gtgaaaaggt gaaaatttat ttaaaatgaa
7501 ttgattttac ctttt
//