Typing tool
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Typing tool
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Complete norovirus genomes
| LC209431 | GII.2 | |
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| GII.P16 |
ORF1: 1..5086
ORF2: 5067..6695
ORF3: 6695..7474
LOCUS LC209431 7514 bp RNA linear VRL 14-DEC-2017
DEFINITION Norovirus Hu/GII/JP/2013/GII.P16_GII.2/Tochigi-46 RNA, nearly
complete genome.
ACCESSION LC209431
VERSION LC209431.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2013/GII.P16_GII.2/Tochigi-46
ORGANISM Norovirus Hu/GII/JP/2013/GII.P16_GII.2/Tochigi-46
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mizukoshi,F., Nagasawa,K., Doan,Y.H., Haga,K., Yoshizumi,S.,
Ueki,Y., Shinohara,M., Ishikawa,M., Sakon,N., Shigemoto,N.,
Okamoto-Nakagawa,R., Ochi,A., Murakami,K., Ryo,A., Suzuki,Y.,
Katayama,K. and Kimura,H.
TITLE Molecular Evolution of the RNA-Dependent RNA Polymerase and Capsid
Genes of Human Norovirus Genotype GII.2 in Japan during 2004-2015
JOURNAL Front Microbiol 8, 705 (2017)
PUBMED 28487679
REMARK DOI:10.3389/fmicb.2017.00705
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7514)
AUTHORS Mizukoshi,F., Matsushima,Y., Ishikawa,M. and Kimura,H.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2017) Contact:Mariko Ishikawa Kawasaki City
Institute for Public Health, Division of Virology; Tonomachi
3-25-13, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7514
/organism="Norovirus
Hu/GII/JP/2013/GII.P16_GII.2/Tochigi-46"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2013/GII.P16_GII.2/Tochigi-46"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1934257"
/country="Japan: Tochigi"
/collection_date="2013"
/note="genotype: GII.P16_GII.2"
gene <1..5086
/gene="POL"
CDS <1..5086
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BBB86911.1"
/translation="ASNDATVAVACNNNNDKEKSSGEGLFTSMSSTLKKALGARPKQP
APRDNLQKPPRPPTPELVKRIPPPPPNGEEEPVIRFEVKSGISGLPDLTTVPQPDATN
TAFSVPPLSLRENREAKEPLTGAIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMAK
VELAPLSLYWRVVYTPQYLISPDTLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIGKIKP
LNILNILATCDWTFAGIVESLILFAELFGVYWTPPDVSAMIAPLLGEYELQGPEDIAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKE
EANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMKTLDLEEEKARKLSTKSA
SPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVAKK
VASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLT
LNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKR
DFPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGL
LHERMDEFELQGPTITTFNFDRNRVTAFRQLAAENKYGLVDTMRIGNQLKGVKTMEEL
KQAIKNVSIKRCQIIYHGSTFDLESDGKGKVTVEKVKNTTVQTNNELAGALHHLRSAR
IRYYVKCVQEAIYSILQIAGAAFVTTRIARRMNIQELWSKPPLDQSEPEVKEETPKLE
DDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE
EYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEI
RKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFIT
STHVIPSGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATV
LIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPY
IYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAP
KLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPP
RPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNGETF
TGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMVR
CARAFGGLMDEMKAHCISLPIRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQR
AVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQWNS
ISHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLREYGLK
PTRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPNHEDP
NETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRW
MRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5067..6695
/gene="VP1"
CDS 5067..6695
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BBB86912.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
VISQRDKHNTPGHNEPANRAHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTDHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGTPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
gene 6695..7474
/gene="VP2"
CDS 6695..7474
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BBB86913.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQVQATKQLQADMMAIKQGVLAAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTAYSGRFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSYGTASSNSTRSTNLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 ggcgtctaac gacgctaccg ttgccgttgc ttgcaacaac aacaacgaca aggaaaaatc
61 ttcgggtgaa ggcttattta caagtatgtc ttccacccta aagaaagccc tcggggctcg
121 gcctaaacag cctgccccga gggacaactt acaaaaaccc ccaagaccac caacgcccga
181 gttggttaaa aggatacccc ctcccccacc taatggcgaa gaagagccag tcattaggtt
241 tgaggtcaag agtggaattt ctggcctgcc cgatctcacg acagtccctc aaccagatgc
301 gaccaatacg gcattcagtg ttccaccgtt gagcttaaga gaaaacaggg aggccaagga
361 accgctaact ggggcaataa tagagatgtg ggatggagag atataccact atggtttgta
421 tgtggagaaa ggcctagtct tgggtgtgca caaaccaccc gcagctataa gcatggcaaa
481 agtggaatta gcaccgctgt cgttatactg gcgtgtggtg tacactcccc aatacctcat
541 ctcccctgac actctcaaga ggctcaacgg agaggcattc ccctacaccg cctttgataa
601 taactgttat gccttttgct gctgggtgtt agaccttaat gactcatggc tcagcagaag
661 aatggtgcag aggacgacag gcttcttcag accctaccaa gagtggaaca gaaagcccct
721 acccaccatg gatgattcca aaattaagaa ggtggcaaac atattcctat gttcattatc
781 tactctgttc accaggccta taaaagacat catagggaaa atcaaaccac tgaatatctt
841 aaacattctg gcaacgtgtg attggacgtt cgccggaatc gtagagtctc taatattatt
901 tgctgaactc tttggagttt actggacacc cccagatgtg tctgctatga tcgctccctt
961 acttggcgaa tacgagttgc agggaccaga agacatcgcc gttgagctcg tacctgtagt
1021 gatggggggg attggtttgg tgctaggatt caccaaagag aaaattggca aaatgctgtc
1081 ctcagcagcg tcaacgctca gggcttgcaa agatcttggt gcctatggtt tagagatact
1141 caaattagtc atgaaatggt ttttcccaaa gaaagaagaa gccaatgaac tagccatggt
1201 gagagcaata gaggatgctg ttctggatct tgaggcgata gaaaacaatc acatgacagc
1261 cctgctgaaa gataaagaca gccttgcaac ttacatgaaa acactggacc tagaggagga
1321 gaaagccaga aaactatcca cgaaatctgc atctcctgac atagttggga caatcaacgc
1381 cctgctggct cgaatagcgg cggctagatc actagtccac agggccaagg aggagctatc
1441 tagcagaatc agaccagtag tcgttatgat atctggcaag ccagggatag gcaagaccca
1501 cttggccagg gaggtggcga aaaaggtggc gtccactctc acaggagatc aaagagttgg
1561 actcataccg agaaacggtg tggaccattg ggatgcatac aaaggtgaaa gggtcgtgtt
1621 gtgggatgac tatggcatga gtaaccctat tcatgatgca ctgcgcatac aggaattggc
1681 cgacacatgc cccctcacct tgaattgtga cagaattgaa aataagggaa aagtttttga
1741 tagtgatgtt ataataatta caacaaacct tgccaaccca gctcctcttg attatgtcaa
1801 ctttgaggcc tgttccagga gaattgactt cctggtgtac gccgaagcgc cagaagtgga
1861 aaaggcaaaa cgggatttcc ctggtcaacc agatatgtgg aaggacgcct tcaaagcgga
1921 cttctcgcac atcaagttgc aacttgcgcc tcagggcggc tttgacaaga atggcaacac
1981 cccacatggg aaaggagtga tgaagaccct taccaccggt tctctgatcg cccgtgcgtc
2041 aggtttgcta catgagagga tggatgaatt tgaacttcag ggccccacaa tcaccacttt
2101 caactttgac cggaacagag tcaccgcttt cagacaactg gctgctgaga acaaatatgg
2161 gctggtggac accatgagga ttggcaatca attgaaaggg gtgaaaacca tggaagaact
2221 caagcaagct atcaagaatg tgtccatcaa gaggtgccag attatctacc atggatccac
2281 gtttgacctt gagtctgatg gcaagggcaa agttacagtg gaaaaggtca aaaacaccac
2341 tgttcagacc aacaacgaat tggccggagc cctgcaccac ctcagaagtg ctcgaatcag
2401 atattatgtc aaatgtgtgc aagaggcaat ctattccatc ctacaaattg ccggcgccgc
2461 gttcgtcacc acacgcattg cacgccgcat gaatatacaa gagctttggt caaagccacc
2521 attagatcaa agcgagccag aggttaagga ggagaccccc aagttagagg atgatgaatt
2581 catcatctcc tccaaggaca ttaaggagga agggaagaag ggcaaaaaca aaactggccg
2641 tggcaagaaa cacactgcat tctctagcaa gggcttgagc gatgaggagt atgacgagta
2701 caagaggata agagaagaga gaaatgggaa gtactctata gaggagtatc ttcaagacag
2761 ggacaggtac tatgaagaac tcgccatcgc caaggccacg gaagaagact tttgtgagga
2821 ggaagaaata aaaatccgcc agcggatctt tcgtcccact agaaaacaaa ggaaggaaga
2881 aagggccacg ttagggctag tgactggttc ggaaatcaga aaaagaaacc ctgatgactt
2941 caaacctaaa gggaaattgt gggccgacga caacagaagt gttgactaca atgaaaaact
3001 ggactttgag gcccccccaa gcatatggtc taggatcgta agctttggtt caggttgggg
3061 cttctgggtg tcaccaagcc tgtttataac atcaactcat gtgatccctt cgggtataac
3121 agaggcattt ggagtcccta tcaaacagat tcaagtccac aaatcgggcg agttttgtcg
3181 gttcagattc ccaaaaccaa ttagaccaga tgtaacagga atgatcctgg aagaaggtgc
3241 gccagagggc accgtagcaa ccgtgctcat caagcgcccc actggagaac tcatgcccct
3301 cgcagctaga atgggaacac acgcaaccat gaaaattcag ggccgcatgg ttggtgggca
3361 gatgggcatg ttgctcactg gttcaaatgc taagggtatg gatctgggga caactcccgg
3421 tgactgtggc tgcccgtata tttacaaaag gggcaatgac tacatagtca ttggagtgca
3481 cacagcagca gcccgaggtg gtaatactgt catctgtgcc acacagggaa gtgagggtga
3541 agcgaccctc gagggtggag acgacaaagg aacatactgt ggggcaccca tcctgggccc
3601 tggaggggcg ccaaagttaa gcacaaaaac caaattttgg agatcatcaa acacgcccct
3661 tccaccaggg acatatgagc ctgcctacct tggcggtcgt gatccgcgtg taaagggtgg
3721 gccttcccta caacaagtca tgagagatca gctaaagccc ttcaccgagc ccaggggtaa
3781 acccccgaga cctagtgtgc tggaggcagc caaacagacc atcatcaacg ttctcgagca
3841 aactttggat cctccacaaa aatggacgta cgcacaggcg tgcgcttcac ttgataaaac
3901 cacctctagt gggcaccccc atcacgctcg aaagaatgaa ttctggaacg gtgagacctt
3961 taccggtaag ttggcagacc aagcatcaaa agcaaactta atgtttgagg aagggaaaca
4021 tatgacacca gtgtacacag cagcccttaa ggatgagttg gttaaaaccg acaaaatcta
4081 tgggaagatc aagaaacgcc tgctttgggg ctctgattta tccaccatgg tccgatgtgc
4141 tagggccttt ggtggactca tggacgagat gaaggcgcac tgcatatcgc tcccaatccg
4201 agttggcatg aatatgaatg aggatggccc aataatattt gagaagcact ccagatataa
4261 atatcactat gatgcagatt actctcgctg ggactcaaca caacagaggg ctgttctagc
4321 agcggccttg gaaataatgg tcagattctc tgcagaaccg caactggccc aaacagttgc
4381 tgaggatctg ctggccccca gtgtagtaga tgtcggagac ttcaaaattt caataaatga
4441 gggactccct tctggtgtac catgcacttc ccagtggaac tccatctcac actggttact
4501 aactctctgt gccttgtctg aagtcaccaa tctgtctcct gacatcgtgc aggcaaattc
4561 tatgttctca ttttacggtg atgacgagat cgtcagcacc gatataaaat tggaccctga
4621 aaagttaacc accaaattga gggagtatgg tctaaaacca actcgcccag acaaaaccga
4681 ggggcccttg atcatcagtg aggatttgga cggtctcacc ttcctccgga ggacggtttc
4741 tcgtgaccca gctggttggt ttggaaagtt agatcaaagc tcaatactaa ggcagatgta
4801 ttggaccaga ggaccaaacc atgaagaccc caatgagaca atgatacccc actctcaaag
4861 acccatacag ctcatggcac tgcttggtga ggcctccctt cacggaccct ctttctacag
4921 caagattagt aaattggtca taactgaact caaagaaggt gggatggact tttacgtgcc
4981 aagacaggaa cccatgttca gatggatgag gttttctgac ttgagcacgt gggagggcga
5041 tcgcaatctg gctcccagtt ttgtgaatga agatggcgtc gaatgacgcc gctccatcta
5101 ctgatggtgc agccggcctc gtgccagaaa gtaataatga ggtcatggct cttgaacccg
5161 tggctggtgc cgccttggca gccccagtca ccggtcaaac aaatataata gacccttgga
5221 ttagagcaaa ttttgtccag gcccccaatg gtgaatttac agtctctccc cgtaactccc
5281 ctggtgaagt gctattgaat ctagagttgg gtccagaatt aaatccttat ctggcacatt
5341 tagcaagaat gtacaatggg tatgccggtg ggatggaggt gcaggtcatg ttggctggga
5401 atgcgttcac agccggcaag ttagtcttcg ccgctgtgcc accccacttt ccggtcgaaa
5461 accttagccc acagcaaatt accatgttcc ctcatgtgat tatagatgtc aggactttgg
5521 aacctgtttt attaccactc cctgatgtta ggaataactt cttccattac aatcagaaag
5581 atgatcccaa gatgagaatt gtggctatgc tttacacccc ccttaggtct aatggttcag
5641 gcgatgatgt gtttacagtc tcctgcaggg tgttgactag accctcccct gattttgatt
5701 tcacatatct ggtgccacca acagtggaat ctaaaacaaa accattcact ctcccaatcc
5761 tcacgcttgg ggaactttcc aattctagat tcccagtgtc catagaccag atgtacacca
5821 gccccaatga agtcatatca gtgcagtgtc aaaatggcag gtgcacactg gatggggaac
5881 tccaaggaac aacacaactc caagtcagtg gcatttgtgc tttcaaggga gaagtgactg
5941 cccacttgca tgacaatgat cacctgtata atgtcaccat cacaaacttg aatgggtccc
6001 cttttgaccc ctccgaggac atccccgccc ctctgggcgt acctgacttt cagggaaggg
6061 tctttggtgt catctcccaa agagacaaac acaacacccc tggacataat gaaccagcaa
6121 acagggcaca cgatgccgtg gtccctactt atacagcaca gtatacccca aaattgggtc
6181 agattcaaat tggcacatgg cagactgacg atctcacagt caaccaacca gtcaaattca
6241 ccccagttgg acttaatgac actgaccatt ttaaccaatg ggtggtcccc aggtatgctg
6301 gtgccctaaa ccttaacaca aaccttgccc cttctgttgc tccagtattt ccaggggagc
6361 gtctgctctt tttcagatca tacatccccc tcaagggcgg ttatggaact ccagccatcg
6421 attgcctact accacaagag tgggtgcaac atttctatca ggaagcagcc ccttcgatga
6481 gtgaggtggc ccttgtcaga tacatcaacc cggatactgg tcgggcactg tttgaggcca
6541 aactccacag agctggtttc atgacagtct caagcaacac cagtgccccg gtggttgtgc
6601 ctgccaacgg atatttcagg tttgattctt gggtgaacca attctattct ctcgccccca
6661 tgggaactgg aaatgggcgc agaaggatcc aataatggct ggagcttttg tagctggtct
6721 tgcaggggac gtgctcagca atgggctcag ttcattaatt aatgcaggtg ctaatgcaat
6781 aaatcagagg gcagaatttg atttcaatca gagattacag caaaattctt tcaatcatga
6841 taaggagatg ttgcaggccc aggtccaggc aactaagcag ctgcaggcag atatgatggc
6901 tataaaacag ggggtcctgg ccgctggcgg cttttcccct gctgatgcag ccagaggtgc
6961 tgtgaacgcg cccatgacac aggcgctgga ttggaacggc acaaggtatt gggcaccagg
7021 ctccatgagg actacagcct actctgggag attcacatca accgccccag tgaggcaggc
7081 tgatttccag cacacccaaa gccggccttc gagtggttct tctgtgtcct cctttgctac
7141 tcagtcttca aggccgaccc tgactacaac cactgggtcc tcatatggca cagcctcatc
7201 aaattcgact cgcagcacaa acctctccca atcaacggtc tccagggcta catctaggac
7261 tggtgaatgg gttagagacc aaaacagaaa tttggaacct tacatgcatg gtgccttaca
7321 gacggccttt gtcaccccac cttccagcag ggcgtctgat gggacggtct caaccgttcc
7381 aaaaggtgtt ttggactcct ggacacctgc gtttaacacc cgcaggcagc cgcttttcgc
7441 acacctccgt aagagggggg agtcacaagc ttagtgaaaa ggtgaaaatt tatttaaaat
7501 gaattgattt ttcc
//