Typing tool
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Typing tool
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Complete norovirus genomes
| LC145803 | GII.2 | |
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| GII.P16 |
ORF1: 1..5094
ORF2: 5075..6703
ORF3: 6703..7482
LOCUS LC145803 7482 bp RNA linear VRL 12-JAN-2018
DEFINITION Norovirus Hu/GII.2/Osaka5_2014_JP genes for polyprotein, VP1, VP2,
complete cds.
ACCESSION LC145803
VERSION LC145803.1
KEYWORDS .
SOURCE Norovirus Hu/GII.2/Osaka5_2014_JP
ORGANISM Norovirus Hu/GII.2/Osaka5_2014_JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Motomura,K., Boonchan,M., Noda,M., Tanaka,T. and Takeda,N.
CONSRTM Norovirus Surveillance Group of Japan
TITLE Norovirus epidemics caused by new GII.2 chimera viruses in
2012-2014 in Japan
JOURNAL Infect. Genet. Evol. 42, 49-52 (2016)
PUBMED 27112386
REMARK DOI:10.1016/j.meegid.2016.04.026
REFERENCE 2 (bases 1 to 7482)
AUTHORS Motomura,K. and Boonchan,M.
TITLE Direct Submission
JOURNAL Submitted (09-APR-2016) Contact:Kazushi Motomura Osaka University,
Research Institute of Microbial Diseases; 3-1, Yamada-oka, Suita,
Osaka 565-0871, Japan
FEATURES Location/Qualifiers
source 1..7482
/organism="Norovirus Hu/GII.2/Osaka5_2014_JP"
/mol_type="genomic RNA"
/strain="Hu/GII.2/Osaka5_2014_JP"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1834913"
/country="Japan:Osaka"
/collection_date="2014"
CDS 1..5094
/note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAV19436.1"
/translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQSAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEPVIRFEVKSGISGLPDLTTVPQPD
ATNTAFSVPPLSLRENREAKEPLTGAIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
MAKVELAPLSLYWRVVYTPQYLISPDTLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIGK
IKPLNILNILATCDWTFAGIVESLILFAELFGVYWTPPDVSAMIAPLLGEYELQGPED
IAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMKTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREV
AKKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERMDEFELQGPTITTFNFDRNRVTAFRQLAAENKYGLVDTMRIGNQLKGVKTM
EELKQAIKNVSIKRCQIIYHGSTFDLESDGKGKVTVEKVKNTTVQTNNELAGALHHLR
SARIRYYVKCVQEAIYSILQIAGAAFVTTRIARRMNIQELWSKPPLDQSEPEVKEETP
KLEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
SEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL
FITSTHVIPPGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTV
ATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG
EAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNG
ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLST
MVRCARAFGGLMDEMKAHCISLPIRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
QQRAVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQ
WNSISHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLREY
GLKPTRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPNH
EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5075..6703
/codon_start=1
/product="VP1"
/protein_id="BAV19437.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSSFDPSEDIPAPLGIPDFQGRVFG
VISQRDKHNTPGHNEPANRAHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTDHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGTPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
CDS 6703..7482
/codon_start=1
/product="VP2"
/protein_id="BAV19438.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQVQATKQLQADMMAIKQGVLAAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTAYSGRFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTNLSQSTVSRATSRTVEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQV"
ORIGIN
1 atgaagatgg cgtctaacga cgctaccgtt gccgttgctt gcaacaacaa caacgacaag
61 gaaaaatctt cgggtgaagg cttatttaca aatatgtctt ccaccctaaa gaaagccctc
121 ggggctcggc ctaaacagtc agccccgagg gacaactcac aaaaaccccc aagaccacca
181 acgcccgagt tggttaaaag gataccccct cccccaccta atggcgaaga agagccagtc
241 attaggtttg aggtcaagag tggaatttct ggcctgcccg atctcacgac agttcctcaa
301 ccagatgcga ccaatacggc attcagtgtt ccaccgttga gcttaagaga gaacagggag
361 gccaaggaac cgctaactgg ggcaataata gagatgtggg atggagagat ataccactat
421 ggtttgtatg tggagaaagg cctagtcttg ggtgtgcaca aaccacccgc agctataagc
481 atggcaaaag tggaattagc accgctgtcg ttatactggc gtgtggtgta cactccccaa
541 tacctcatct cccctgacac tctcaagagg ctcaacggag aggcattccc ctacaccgcc
601 tttgataata actgttatgc cttttgctgc tgggtgttag accttaatga ctcatggctc
661 agcagaagaa tggtgcagag gacgacaggc ttcttcagac cctaccaaga gtggaacaga
721 aagcccctac ccaccatgga tgattccaaa attaagaagg tggcaaacat attcctatgt
781 tcattatcta cactgttcac caggcctata aaagacatca tagggaaaat caaaccactg
841 aatatcttaa acattctggc aacgtgtgat tggacgttcg ccggaatcgt agagtctcta
901 atattatttg ctgaactctt tggagtttac tggacacccc cagatgtgtc tgctatgatc
961 gctcccttac ttggcgagta cgagttgcag ggaccagaag acatcgccgt tgagctcgta
1021 cctgtagtga tgggggggat tggtttagtg ctaggattca ccaaagagaa aattggcaaa
1081 atgctgtcct cagcagcgtc aacgctcagg gcttgcaaag accttggtgc ctatggttta
1141 gagatactca aattagtcat gaaatggttt ttcccaaaga aagaagaagc caatgaacta
1201 gccatggtga gagcaataga ggatgctgtt ctggatcttg aggcgataga aaacaatcac
1261 atgacagccc tgctgaaaga taaagacagc cttgcaacct acatgaaaac actggaccta
1321 gaggaggaga aagccagaaa actgtccacg aaatctgcat ctcctgacat agttgggaca
1381 atcaacgccc tgctggctcg aatagcggcg gctagatcac tagtccacag ggccaaggag
1441 gagctatcta gcagaatcag accagttgtc gttatgatat ctggcaagcc agggataggc
1501 aagacccact tggccaggga ggtggcgaaa aaagtggcgt ccactctcac aggagatcaa
1561 agagttggac tcataccgag aaacggtgtg gaccattggg atgcatacaa aggtgaaagg
1621 gtcgtgttgt gggatgacta tggcatgagt aaccctattc atgatgcact gcgcatacag
1681 gaattggccg acacatgccc cctcaccttg aattgtgaca gaattgaaaa caagggaaaa
1741 gtttttgata gtgatgttat aataattaca acaaaccttg ccaacccagc tcctcttgat
1801 tatgtcaact ttgaggcctg ttccaggaga attgacttcc tggtgtacgc cgaagcgcca
1861 gaagtggaaa aggcaaaacg ggatttccct ggtcaaccag atatgtggaa ggacgccttc
1921 aaagcggact tctcgcacat caagttgcaa cttgcgcccc agggcggctt tgacaagaat
1981 ggcaacaccc cacatgggaa aggagtgatg aagaccctta ccaccggttc tctgatcgcc
2041 cgtgcgtcag gcttgctgca tgagaggatg gatgagtttg aacttcaggg ccccacaatc
2101 accactttca actttgaccg gaacagagtc accgctttca gacaactggc tgctgagaac
2161 aaatatggac tggtggatac catgaggatt ggcaatcaat tgaaaggggt gaaaaccatg
2221 gaagaactca agcaagctat caagaatgtg tccatcaaga ggtgccagat tatctatcat
2281 ggatccacgt ttgaccttga gtctgatggc aagggtaaag ttacagtgga aaaggtcaaa
2341 aacaccactg ttcagaccaa caacgaattg gccggagccc tgcaccacct cagaagtgct
2401 cgaatcaggt attatgtcaa atgtgtgcaa gaggcaatct attctatcct acaaattgcc
2461 ggcgccgcgt ttgtcaccac acgcattgca cgccgcatga atatacaaga gctttggtca
2521 aagccaccac tagaccaaag cgagccagag gtcaaggagg agacccccaa gttagaggat
2581 gatgaattca tcatctcctc caaggacatt aaggaggaag ggaagaaggg caaaaacaaa
2641 actggccgtg gcaagaaaca cactgcattc tctagcaagg gcttgagcga tgaggagtat
2701 gacgagtaca agaggataag agaagagaga aatgggaagt attctataga ggagtatctt
2761 caagacaggg acaggtacta tgaagaactc gccatcgcca aggccacgga agaagacttt
2821 tgtgaggagg aagagataaa aatccgccag cgaatctttc gtcccactag aaaacaaagg
2881 aaggaagaaa gggccacgtt agggctagtg actggttcgg aaatcagaaa aagaaaccct
2941 gatgacttca aacctaaagg gaaattgtgg gccgacgaca acagaagtgt tgactacaat
3001 gaaaaactgg actttgaggc ccccccaagc atatggtcta ggatcgtaag ctttggttca
3061 ggttggggct tctgggtgtc accaagcctg tttataacat caactcatgt gatccctccg
3121 ggtataacag aggcatttgg agtccctatc aaacagattc aagtccacaa atcgggcgaa
3181 ttttgtcggt tcagattccc aaaaccaatt agaccagatg taacaggaat gatcctggaa
3241 gaaggtgcgc cagagggcac cgtagcaacc gtgctcatca agcgccccac tggagaactc
3301 atgcccctcg cagctagaat gggaacacac gcaaccatga aaattcaggg ccgcatggtt
3361 ggtgggcaga tgggcatgtt gctcactggt tcaaatgcta agggtatgga tctggggaca
3421 actcccggtg actgtggctg cccgtatatt tacaaaaggg gcaatgacta catagtcatt
3481 ggagtgcaca cagcagcagc ccgaggtggt aatactgtca tctgtgccac acagggaagt
3541 gagggtgaag cgaccctcga gggtggagac gacaaaggaa catactgtgg ggcacccatc
3601 ctgggccctg gagaggcgcc aaagttaagc acaaaaacca aattttggag gtcatcaaac
3661 acgcccctcc caccagggac atatgagcct gcctaccttg gcggtcgtga tccgcgtgta
3721 aagggtgggc cttccctaca acaagtcatg agagatcagt taaagccctt caccgagccc
3781 aggggtaaac ccccgagacc tagtgtgctg gaggcagcca aacagaccat catcaacgtt
3841 ctcgagcaaa ctttggatcc cccacaaaaa tggacgtacg cacaagcgtg cgcttcactt
3901 gataaaacca cctctagtgg acacccccat cacgctcgaa agaatgaatt ctggaacggt
3961 gagaccttta ccggtaagtt ggcagaccaa gcatcaaaag caaacttaat gtttgaggaa
4021 gggaaacata tgacaccagt gtacacagca gcccttaagg atgagttggt taaaaccgac
4081 aaaatctatg ggaagatcaa gaaacgcctg ctttggggct ctgatttatc caccatggtc
4141 cgatgtgcta gggcctttgg tggactcatg gacgagatga aggcgcactg catatcgctc
4201 ccaatccgag ttggcatgaa tatgaatgag gatggcccaa taatatttga gaagcactcc
4261 agatataaat atcactatga tgcagactac tctcgctggg actcaacaca acagagggct
4321 gttctagcag cggccttgga aataatggtc agattctctg cagaaccgca actggcccaa
4381 acagttgctg aggatctgct ggcccccagt gtagtagatg tcggagactt caaaatttca
4441 ataaatgagg gactcccttc tggtgtacca tgcacttccc agtggaattc catctcacac
4501 tggttgctaa ctctctgtgc tttgtctgaa gtcaccaacc tgtctcctga catcgtgcag
4561 gcaaattcta tgttctcatt ttacggtgat gacgagatcg tcagcaccga tataaaattg
4621 gaccctgaaa agttaaccac caaattgagg gagtatggtc taaaaccaac tcgcccagac
4681 aaaaccgagg ggcccttgat catcagtgag gatttggacg gtctcacctt cctccggagg
4741 acggtttctc gtgacccagc tggttggttt ggaaagttag atcaaagctc aatactaagg
4801 cagatgtatt ggaccagagg accaaaccat gaagacccca atgagacaat gataccccac
4861 tctcaaagac ccatacagct catggcactg cttggtgagg cctcccttca cggaccctct
4921 ttctacagca agattagtaa attggtcata actgaactca aagaaggtgg gatggacttt
4981 tacgtgccaa gacaggaacc catgttcaga tggatgaggt tttctgattt gagcacgtgg
5041 gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga atgacgccgc
5101 tccatctact gatggtgcag ccggcctcgt gccagaaagt aataatgagg tcatggctct
5161 tgaacccgtg gctggtgccg ccttggcagc cccagtcacc ggtcaaacaa atataataga
5221 cccttggatt agagcaaatt ttgtccaggc ccccaatggt gaatttacag tctctccccg
5281 taactcccct ggtgaagtgc tattgaatct agagttgggt ccagaattaa atccttatct
5341 ggcacattta gcaagaatgt ataacgggta tgccggtggg atggaggtgc aggtcatgtt
5401 ggctgggaat gcgttcacag ccggcaagtt agtcttcgcc gctgtgccac cccacttccc
5461 ggtcgaaaac cttagcccac agcaaattac catgttccct catgtgatta tagatgtcag
5521 gactttggaa cctgttttat taccactccc tgatgttagg aataacttct tccattacaa
5581 tcagaaagat gaccccaaga tgagaattgt ggctatgctt tacacccccc tcaggtctaa
5641 tggttcaggc gatgatgtgt ttacagtttc ctgcagggtg ttgactagac cctcccctga
5701 ttttgatttc acatatctgg tgccaccaac agtggaatct aaaacaaaac cattcactct
5761 cccaatcctc acgcttgggg aactttctaa ttctagattc ccagtgtcca tagaccagat
5821 gtacaccagc cccaatgaag tcatatcagt gcagtgccaa aatggcaggt gcacactgga
5881 tggggaactc caaggaacaa cacaactcca agtcagtggc atttgtgctt tcaagggaga
5941 agtgactgcc cacttgcatg acaatgatca cctgtataat gtcaccatca caaacttgaa
6001 tgggtcctct tttgacccct ctgaggacat ccccgcccct ctgggcatac ctgactttca
6061 ggggagggtc tttggtgtca tctcccaaag agacaaacac aacacccctg gacacaatga
6121 accagcaaac agggcacacg atgccgtggt ccctacttat acagcacagt ataccccaaa
6181 attgggtcag attcaaattg gcacatggca gactgacgat ctcacagtca accaaccagt
6241 caaattcacc ccagttggac ttaatgatac tgaccatttt aaccaatggg tggtccccag
6301 gtatgctggt gccctaaacc taaacacaaa ccttgcccct tctgttgctc cagtatttcc
6361 aggggagcgt ctgctctttt tcagatcata cattcccctc aagggcggtt atggaactcc
6421 agccatcgat tgcctactac cacaagagtg ggtgcaacat ttctatcagg aagcagcccc
6481 ttcgatgagt gaggtggccc ttgtcagata catcaacccg gatactggtc gggcactgtt
6541 cgaggccaaa ctccacagag ctggtttcat gacagtctca agcaacacca gtgccccggt
6601 ggttgtgcct gccaacggat acttcaggtt tgattcttgg gtgaaccaat tctattctct
6661 cgcccccatg ggaactggaa atgggcgtag aaggatccaa taatggctgg agcttttgta
6721 gctggtcttg caggggacgt gctcagcaat gggctcagtt cattaattaa tgcaggtgct
6781 aatgcaataa atcagagggc agaatttgat tttaatcaga aattacagca aaattctttc
6841 aatcatgata aggagatgtt gcaggcccag gtccaggcaa ctaagcagct gcaggcagat
6901 atgatggcta taaaacaggg ggtcctggcc gctggcggct tttcccctgc tgatgcagcc
6961 agaggtgctg tgaacgcgcc catgacacag gcgctggatt ggaacggcac aaggtattgg
7021 gcaccaggct ccatgaggac tacagcctac tctgggagat tcacatcaac cgccccagtg
7081 aggcaggctg atttccagca cacccaaagc cggccctcga gtggttcttc tgtgtcctcc
7141 tttgctactc agtcttcaag gccgaccctg accacaacca ctgggtcctc acatggcaca
7201 gcctcatcaa attcgactcg cagcacaaac ctctcccaat caacggtctc cagggctaca
7261 tctaggactg ttgaatgggt cagagaccaa aacagaaatt tggaacctta tatgcatggt
7321 gccttacaga cggcctttgt caccccacct tccagcaggg cgtctgatgg gacggtctca
7381 accgttccaa aaggtgtttt ggactcctgg acacctgcgt ttaacacccg caggcagccg
7441 cttttcgcac acctccgtaa gaggggggag tcacaggttt ag
//