Typing tool
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Typing tool
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Complete norovirus genomes
| LC145787 | GII.2 | |
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| GII.P16 |
ORF1: 1..5097
ORF2: 5078..6706
ORF3: 6706..7485
LOCUS LC145787 7485 bp RNA linear VRL 12-JAN-2018
DEFINITION Norovirus Hu/GII.2/Miyagi1_2012_JP genes for polyprotein, VP1, VP2,
complete cds.
ACCESSION LC145787
VERSION LC145787.1
KEYWORDS .
SOURCE Norovirus Hu/GII.2/Miyagi1_2012_JP
ORGANISM Norovirus Hu/GII.2/Miyagi1_2012_JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Motomura,K., Boonchan,M., Noda,M., Tanaka,T. and Takeda,N.
CONSRTM Norovirus Surveillance Group of Japan
TITLE Norovirus epidemics caused by new GII.2 chimera viruses in
2012-2014 in Japan
JOURNAL Infect. Genet. Evol. 42, 49-52 (2016)
PUBMED 27112386
REMARK DOI:10.1016/j.meegid.2016.04.026
REFERENCE 2 (bases 1 to 7485)
AUTHORS Motomura,K. and Boonchan,M.
TITLE Direct Submission
JOURNAL Submitted (09-APR-2016) Contact:Kazushi Motomura Osaka University,
Research Institute of Microbial Diseases; 3-1, Yamada-oka, Suita,
Osaka 565-0871, Japan
FEATURES Location/Qualifiers
source 1..7485
/organism="Norovirus Hu/GII.2/Miyagi1_2012_JP"
/mol_type="genomic RNA"
/strain="Hu/GII.2/Miyagi1_2012_JP"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1834897"
/country="Japan:Miyagi"
/collection_date="2012"
CDS 1..5097
/note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAV19388.1"
/translation="MKMASNDANVAVAYNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQSAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLEDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKT
MEELKQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHL
KHARIRYYVRCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEA
PKSEDDEFIISSKDIKEEGKKGKNKTGRGRKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN
HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
CDS 5078..6706
/codon_start=1
/product="VP1"
/protein_id="BAV19389.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLSLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDVPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYVPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 6706..7485
/codon_start=1
/product="VP2"
/protein_id="BAV19390.1"
/translation="MAGAFMAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGKFTSIAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTGLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESHA"
ORIGIN
1 atgaagatgg cgtctaacga cgctaacgtt gccgttgctt acaacaacaa caacgacaag
61 gaaaaatctt caggtgaagg cttattcaca aatatgtctt ccaccttaaa gaaagccctc
121 ggggcccggc ccaaacagtc cgccccgagg gacaactcac aaaagccccc aagaccacca
181 actcccgagt tggttaagag gataccccct cccccaccta atggtgaaga agaagagcca
241 gtcattaggt atgaggttaa gagtgggatc tctggcctgc ccgagctcac aacagtcccc
301 caaccggatg tggccaacac ggcattcagt gtcccaccgc tgagcttgag agaaaacagg
361 gaggccaagg aaccgctgac aggggcaata ttagagatgt gggatggaga gatataccac
421 tatggcctgt acgtggagaa aggcttagtg ttgggtgtgc acaaaccacc tgcagctata
481 agcatggcaa aagtggagct gacgccgttg tcattgtact ggcgtgtggt ctacaccccc
541 caatacctca tctcccctga aactctcagg aggctcaacg gagaggcatt cccttacacc
601 gcctttgaca acaattgcta tgccttttgc tgctgggtat tagacctcaa tgactcatgg
661 cttaacagga ggatggtaca aagaacaaca ggcttcttca gaccttacca agagtggaac
721 agaaaacccc tgcctactat ggatgactcc aaaatcaaga aggtggcaaa catattcctg
781 tgttcattgt ccacgttgtt caccagacct ataaaagacc tcataggaaa aattaaacca
841 ttaaacatct tgaacatcct ggcaacgtgt gactggacat tcgccggaat agtggagtct
901 ctgatattac ttgctgaact ctttggagtt ttctggacac ccccagatgt gtctgctatg
961 atcgctccct tacttgaaga ctacgagttg caagggccag aagacctcgc cgttgagctc
1021 gtacctgtgg taatgggagg gattggtttg gtgttgggat tcaccaaaga gaaaattggc
1081 aaaatgttgt cctcagcagc atcaacgctc agggcttgta aggatcttgg tgcctatggc
1141 ttagagatac tcaaattggt catgaagtgg ttcttcccaa agaaagaaga ggccaatgag
1201 ctagccatgg tgagagctat agaggatgct gtgttggatc ttgaggcaat agaaaataat
1261 cacatgacaa ctctgttgaa agacaaagac agcctagcaa cctacatgaa aacactagac
1321 atggaagagg agaaagccag aagattgtcc acaaaatctg catcccctga catagttggg
1381 acgatcaacg ccctgctggc tcgaatagca gcggctaggt cattagtcca cagggccaag
1441 gaggagttat ctagcaggat aagaccagta gttgttatga tatctggcaa accagggata
1501 ggtaaaactc atttggccag ggaggtggca agaaaggtgg catccactct cacaggggat
1561 caaagagtcg ggctcatacc gagaaacggt gtggaccact gggatgcata caaaggtgag
1621 agagtcgtgc tgtgggacga ctatggcatg agcaacccca ttcatgatgc tttgcgcata
1681 caagaattgg ctgatacgtg tccccttacc ttaaattgcg acagaattga aaataaggga
1741 aaagtttttg acagtgaagt cataataatc acaacaaacc ttgccaatcc agctccactt
1801 gattatgtca actttgaggc ctgttccagg agaattgact tcctggtgta cgccgaggca
1861 ccagaagtag aaaaggcaaa acgagacttt cctggtcaac cagatatgtg gaaggacgcc
1921 ttcaagtcgg acttttcaca tatcaagttg caacttgcac ctcagggcgg ctttgacaag
1981 aatggtaaca ccccacatgg gaaaggagtg atgaagaccc tcaccaccgg ttccctgatt
2041 gcccgtgcat caggcttact gcatgagagg atggatgaat ttgaactcca aggccccaca
2101 gttaccacct tcaatttcga ccggaacaga atcaccgcat tcagacaatt ggccgcagaa
2161 aacaagtatg ggttggtgga caccatgaga gttggcaatc aattaaaagg ggtgaaaacc
2221 atggaagaac tcaaacaagc aatcaagaat gtgatcatca agaggtgccg gatcatctac
2281 ggtggctcca cgtatgacct tgaatctgat ggcaagggca aagttttggt ggaaaaggtc
2341 aagaacacct ctatacagac caacaacgag ttggctggag ccctgcatca cctcaaacat
2401 gcccgaatca ggtattatgt cagatgtgtg caagaagcag tttactctat catacaaatt
2461 gccggcgctg cgtttgtcac cacacgcatt gcacgccgca tgaacataca agagctttgg
2521 tcgaagccac cattagacca aaatgaatca gaggctaagg aagaggcccc caagtcagaa
2581 gatgacgagt tcatcatatc ttctaaggac atcaaggagg aaggaaagaa gggcaaaaac
2641 aaaactggcc gtggcaggaa acacactgca ttctctagca agggcttgag cgatgaggag
2701 tatgacgagt acaagaggat aagagaagag agaaatggga agtactctat agaggagtat
2761 cttcaagaca gagacaggta ctatgaggaa ctcgccatcg ccaaggccac ggaagaagac
2821 ttctgtgagg aggaggaggt caaaatccgt cagaggatct tccgtcccac caggaaacaa
2881 aggaaggaag agagggctac actaggacta gtaactggtt cagaaatcag aaaaagaaac
2941 cctgatgact tcaaacctaa agggaaactg tgggccgatg acaacagaag tgttgactac
3001 aatgagaaac tggactttga ggccccccca agcatatggt ctaggattgt gagttttggt
3061 tctggttggg gcttctgggt atcaccaagc ctgttcataa catcaactca tgtaatccct
3121 gcaggcataa cagaggcatt tggagtcccc atcaaacaaa tccaggtcca caaatcaggt
3181 gaattttgcc ggttcagatt cccaaaacca attagaccag atgtgacagg aatgatattg
3241 gaagaaggtg cgcctgaggg caccgtggca accgtactca tcaaacgccc taccggagag
3301 ctcatgcccc ttgcagccag aatggggaca cacgcaacca tgaagattca aggccgcatg
3361 gttggcggac agatgggtat gttgctcact ggttcaaatg ctaaaggaat ggatttggga
3421 acaactcctg gtgattgtgg ctgtccctac atctacaaaa ggggcaatga ctatatagtc
3481 attggggtgc acacagcagc agcccgtggt ggaaacaccg tcatctgtgc cacacaggga
3541 agtgagggtg aggcaactct tgagggtgga gatgacaaag gaacatactg tggagcaccc
3601 attctaggcc ccgggggggc accaaaattg agcaccaaaa ccaaattttg gaggtcatcg
3661 aacacgcctc ttccaccagg gacatatgag cctgcctacc tcggtggccg tgacccgcgt
3721 gttaagggtg ggccctcctt gcagcaggta atgagagacc agttgaaacc attcactgaa
3781 cccaggggta aacctccaag accaagtgtg ttggaggcag ccaaacaaac catcatcaat
3841 gtcctcgaac aaaccctgga ccctccacaa aaatggacat acgcacaggc gtgtgcttca
3901 cttgacaaaa ccacctccag cgggcatccc caccacgtcc gaaagaatga attctggaat
3961 ggtgagacct tcactggtaa attggcagac caagcatcaa aagcaaatct gatgtttgag
4021 gaagggaaac acatgacacc agtgtataca gcagccctca aggacgagct ggtcaagact
4081 gacaaagtct atggaaagat caagaagaga ctgctctggg gctctgactt gtccaccatg
4141 atccggtgcg ccaggtcctt tggtgggctt atggatgaga tgaaggcaca ctgcatatca
4201 ctcccagtcc gagttggcat gaacatgaat gaagatggtc caataatatt tgagaagcac
4261 tccagataca agtaccacta tgatgcagac tactcccgct gggattcaac acaacagagg
4321 gcagtactag cagcagcctt ggaaatcatg gtcaggttct ctgcagagcc acaattggca
4381 cagatagtcg ctgaggatct gctggccccc agtgtggtag atgtaggaga ctttaaaatt
4441 tcaataaatg aggggctccc ctctggtgta ccatgcactt ctcaatggaa ttccatcgca
4501 cactggctgc taaccctctg tgccttgtct gaagtcacca aactgtcccc tgacattgta
4561 caggcaaatt ccatgttctc attttacggt gatgacgaga ttgtcagcac cgatataaaa
4621 ttggaccctg aaaagttaac caccaaattg aaggagtatg gcctgaaacc aactcgccca
4681 gacaaaaccg agggacccct gatcatcagt gaggatttga atggactcac tttcctccgg
4741 aggacggtga ctcgtgaccc agctggctgg tttggaaaat tggaccaaag ttcaatattg
4801 aggcagatgt actggactag aggaccaaat catgaagacc ccaatgagac aatgataccc
4861 cactctcaaa gacccataca gctcatggca ctgcttggtg aggcctccct tcacggaccc
4921 tctttctaca gcaaaatcag taaattggtc ataactgaac tcaaagaagg tgggatggac
4981 ttttacgtgc caagacagga acccatgttc agatggatga ggttttctga cttgagcacg
5041 tgggagggcg atcgcaatct ggctcccaat tttgtgaatg aagatggcgt cgaatgacgc
5101 cgctccatct actgatggtg cagccggcct cgtgccagaa agtaacaatg aggtcatggc
5161 tcttgaaccc gtggctggtg ccgccttggc agcaccggtc accggtcaaa caaatattat
5221 agacccttgg attagagcaa attttgtcca ggcccccaat ggcgaattta cagtctctcc
5281 ccgtaatgcc cctggtgaag tgctattaag tctagaattg ggtccagaat taaatcctta
5341 tctggcacat ttagcaagaa tgtacaacgg gtatgccggt gggatggagg tgcaggtcat
5401 gttggctggg aatgcgttca cagccggcaa gttggtcttc gccgctgtgc cacctcactt
5461 cccggttgaa aaccttagcc cacagcaaat taccatgttc cctcatgtga ttatagatgt
5521 aaggaccttg gaacctgttt tattaccact ccctgatgtt aggaataatt tcttccatta
5581 taatcagaaa gatgatccca aaatgagaat tgtggctatg ctttataccc cccttagatc
5641 taatggttca ggtgatgatg tgttcacagt ttcctgcagg gtgttgacca gaccctcccc
5701 tgatttcgat ttcacatatc tggtgccacc aacagtggaa tctaaaacaa aaccattcac
5761 cctcccaatc ctcacacttg gggaactttc caattctagg ttcccagtgt ccatagacca
5821 gatgtacacc agccctaatg aagttatatc agtgcagtgt caaaatggta ggtgcacatt
5881 ggacggggaa cttcaaggga caacacaact ccaagtcagt ggcatttgtg ctttcaaggg
5941 ggaagtgacc gcccatttgc atgacaatga tcacctatac aatgtcacca tcacaaactt
6001 gaatgggtcc ccttttgacc cctccgagga cgttcctgcc cctctgggcg tgcctgattt
6061 ccagggaagg gtctttggta ttatctccca aagagacaaa cataatagcc ctgggcataa
6121 tgaaccagca aacaggggac acgacgctgt ggtccctact tacacagcac agtacactcc
6181 aaaattgggt cagattcaaa ttggcacatg gcagaccgat gatcttacag tcaaccaacc
6241 agtcaaattc accccagttg gactcaatga cactgaacat tttaatcaat gggtggtccc
6301 cagatacgct ggtgccctaa acctcaacac aaaccttgcc ccttctgttg ctccggtatt
6361 tccaggggag cgcctgcttt tcttcagatc atacgttccc ctcaagggtg gttatggaaa
6421 tccagccatt gattgcctat taccacaaga gtgggtgcaa cacttctatc aggaagctgc
6481 cccatcaatg agtgaggtgg cccttgtcag atacatcaac ccggatactg gtcgggcact
6541 gtttgaggcc aagctccaca gagctggttt catgacagtc tcgagcaaca ccagtgcccc
6601 ggtggttgtg cctgccaatg ggtacttcag atttgactct tgggttaatc aattctattc
6661 tctcgccccc atgggaactg gaaatgggcg tagaagggtt caataatggc tggagctttt
6721 atggctggtc ttgcagggga cgtgctcagc aatgggctca gttcattaat taatgcaggt
6781 gctaatgcaa taaatcagag ggcagaattt gattttaatc agaaattaca gcaaaattct
6841 ttcaatcatg ataaggagat gttgcaggcc cagattcagg caactaagca gctgcaggca
6901 gacatgatgg ctataaaaca gggggtcctg accgctggcg gcttttcccc tgctgatgca
6961 gccagaggtg ctgtgaatgc gcccatgaca caggcgctgg attggaacgg cacaaggtat
7021 tgggcaccag gctctatgag gaccacatct tattctggaa aattcacatc aatcgcccca
7081 gtgaggcagg ccgacttcca gcacacccaa agccggcctt cgagtggctc ttctgtgtcc
7141 tcctttgcca ctcagtcttc aaggccaact ctgaccacaa ccactgggtc ctcacatggc
7201 acagcctcat caaattcaac tcgcagcaca ggcctctccc aatcaacggt ctctagagct
7261 acatctagga ctagtgagtg ggttagagat caaaatagaa atttggaacc ctacatgcat
7321 ggtgccttac agacggcctt tgtcacccca ccttccagca gggcgtctga cgggacagtc
7381 tcaaccgtcc caaaaggtgt tttggactcc tggacacctg cgttcaacac ccgcaggcag
7441 ccgctctttg cacacctccg taagaggggg gagtcacatg cctag
//