Typing tool
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Typing tool
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Complete norovirus genomes
| LC133344 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5064
ORF2: 5045..6667
ORF3: 6667..7473
LOCUS LC133344 7509 bp RNA linear VRL 01-APR-2017
DEFINITION Norovirus Hu/GII.4/OsakaSB2-1/2014/JPA genes for non-strustural
polyprotein, major capsid protein, minor capsid protein, partial
and complete CDS.
ACCESSION LC133344
VERSION LC133344.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/OsakaSB2-1/2014/JPA
ORGANISM Norovirus Hu/GII.4/OsakaSB2-1/2014/JPA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Sakon,N., Motooka,D., Nakamura,S., Kase,T. and Komano,J.
TITLE Repeated asymptomatic norovirus infection in infants accompanied by
high levels of viral excretion
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7509)
AUTHORS Sakon,N., Motooka,D., Nakamura,S. and Komano,J.
TITLE Direct Submission
JOURNAL Submitted (15-MAR-2016) Contact:Naomi Sakon Osaka Prefectural
Institute of Public Health, Infectious Diseases; 1-3-69 Nakamichi,
Higashinari-ku, Osaka, Osaka 537-0025, Japan
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 8.0
Sequencing Technology :: Illumina MiSeq
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7509
/organism="Norovirus Hu/GII.4/OsakaSB2-1/2014/JPA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/OsakaSB2-1/2014/JPA"
/host="Homo sapiens"
/db_xref="taxon:1815554"
/country="Japan"
/collection_date="2014-01-02"
CDS <1..5064
/codon_start=1
/product="non-strustural polyprotein"
/protein_id="BAX07922.1"
/translation="VANSNNDIVKSSSDGVFSNMAVTFKRALGARPKQPPPKETPPRP
PRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETNTAFSVPPLN
QRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAPLSLF
WRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTG
FFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNILAT
CDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIVMGG
IGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVR
SIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTIN
SLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQ
RVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENK
GKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMW
KNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYE
LQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKNIAI
KKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYVKCVQ
EALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEEFVVS
SDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRD
RYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPED
FKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQ
GAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTG
ELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGND
YVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTK
FWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEA
AKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQ
ASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGG
LMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAAL
EIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLT
LCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKT
EGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPH
SQRPIQLMSLLGEAALHGPAFYSRISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLS
TWEGDRNLAPSFVNEDGVE"
CDS 5045..6667
/codon_start=1
/product="major capsid protein"
/protein_id="BAX07923.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6667..7473
/codon_start=1
/product="minor capsid protein"
/protein_id="BAX07924.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKGILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 gttgccaata gcaacaacga catcgtaaaa tcttcaagtg acggtgtgtt ttctaacatg
61 gctgtcactt ttaagcgggc cctcggggcg cggcctaaac agccgccccc gaaggaaaca
121 ccacccagac ccccgcgacc acccacacca gaattggtca aaaagatccc tcctccccca
181 cccaacgggg aggatgaact agtggtctct tacagcgcca aagatggcgt ttccggactg
241 cctgagctca ccactgtcag acaaccggaa gaaaccaaca cggcgttcag tgtcccccca
301 ctcaaccaaa gggagagcag ggacgccaag gagccactaa ctggaacaat cattgaaatg
361 tgggatggag aaatctacca ttacggcctg tacgtggaac gaggtcttat acttggtgtg
421 cacaagccac cggcagccat tagccttgcc aaggtcgagc tagcaccgct ctccttgttc
481 tggagacctg tatacacccc ccagtatctc atctctccag acactcttag gagattacat
541 ggagagtcat tcccctacac tgcatttgac aacaattgct acgccttttg ttgttgggta
601 ttagacctaa acgactcatg gctaagcagg agaatgattc agagaacaac aggcttcttc
661 aggccgtatc aggattggaa caggaaaccc ctccccacta tggatgattc caaattaaag
721 aaggtagcca acatattctt gtgcactttg tcctcactat tcaccagacc cattaaggac
781 ataataggga agttgaaacc tcttaacatc cttaacattc tggctacatg tgattggacc
841 ttcgcaggca tagtggaatc cttaatactc ttggcagaac tctttggagt tttctggaca
901 cccccagatg tgtctgcgat gatcgccccc ttgctaggtg attatgaact gcaaggacct
961 gaggaccttg cagtggaact ggtcccaata gtgatggggg ggataggttt ggtgctagga
1021 tttaccaaag agaaaatcgg aaagatgcta tcatccgctg catccacttt aagagcttgt
1081 aaagaccttg gtgcatacgg actggaaatc ttaaaattgg tcatgaagtg gttcttccca
1141 aagaaagagg aagcaaatga actggctatg gtgagatcca tcgaggatgc agtactagac
1201 ctcgaggcaa ttgaaaacaa ccacatgacc accctactca aagacaaaga cagcttggca
1261 acctacatga gaacccttga ccttgaggag gagaaagcca gaaaactctc aaccaaatct
1321 gcttcacccg atattgtggg cacaatcaac tctcttctgg caagaatcgc tgctgcacgc
1381 tccctagtgc atcgggcgaa agaagagctt tccagcaggc cgagacctgt cgttgtgatg
1441 atatcgggaa gaccagggat agggaaaact caccttgcca gggagttggc caagaagatc
1501 gcggcctccc tcacagggga ccagcgtgtg ggtcttatcc cacgcaatgg tgtcgaccat
1561 tgggacgcat acaagggcga aagagttgtc ctatgggacg actatggaat gagcaacccc
1621 atccatgatg ccctcaggtt gcaggagctt gctgacactt gccccctcac gctaaattgt
1681 gacagaattg agaacaaagg gaaagtcttt gacagtgatg ccataattat caccaccaat
1741 ctggccaacc cagcaccact ggattatgtc aactttgaag cgtgctcgag acgcattgat
1801 ttcctcgtgt acgcagaagc ccctgaggtg gagaaggcaa agcgcgactt cccaggtcaa
1861 cctgacatgt ggaagaacgc tttcagtcct gacttctcac acataaaact gtcattggct
1921 ccacagggtg gttttgacaa gaacggcaac accccgcatg gaaaaggggt catgaagacc
1981 ctcaccactg gctccctcat cgcccgagca tcagggttac tccatgagag gctagatgaa
2041 tatgaactgc aaggcccagc cctcaccacc ttcaactttg accgcaacaa gatacttgct
2101 tttagacaac ttgctgctga aaacaagtat gggctgatgg acacaatgag agttggaaaa
2161 cagctcaagg atgtcaagac catgtcagac ctcaaacaag cactcaagaa catcgcgatc
2221 aagaagtgcc agatagtgta caatggtggc acctacacac ttgaggctga tggcaagggt
2281 agtgtgaaag ttgacaaagt gcaaagtgcc actgtgcaga ccaacaatga actagccggt
2341 gccctacacc acctaaggtg cgctagaatc agatactatg ttaagtgcgt ccaggaggca
2401 ctgtattcca tcatccaaat cgctggggct gcattcgtca ccacgcgcat cgctaagcgc
2461 atgaatatac agaatctctg gtccaagcca caggtggaag acacagaaga gatggccaac
2521 aaagatggtt gcctaaaacc caaagatgat gaagagtttg tcgtctcatc cgacgacatc
2581 aaaactgagg gcaagaaagg gaagaacaag tccggccgtg gcaagaagca cacagccttt
2641 tcaagtaaag ggctcagtga tgaggagtac gatgagtaca agagaatcag agaagaaagg
2701 aatggtaagt actccataga agagtacctt caggacagag acaggtacta cgaggaggtg
2761 gccattgcca gggcaaccga agaggacttc tgtgaagaag aagaggccaa aatccggcag
2821 agaattttca gaccaacaag gaaacaacgc aaagaagaga gggcttctct cggcttggtc
2881 acaggctctg aaatcaggaa gagaaaccca gaagacttca aacccaaggg aaagctgtgg
2941 gctgatgatg acagaagtgt tgactacaat gagaaactca actttgaggc cccaccaagc
3001 atctggtcgc ggatagtcaa ctttggttca ggctggggct tctgggtctc ccccagtctg
3061 tttataacat caacccatgt cataccccaa ggtgcaaaag agttcttcgg agtccctatc
3121 aagcaaatcc agatacacaa gtcaggtgaa ttctgccggt tgagattccc aaagccaatc
3181 agaactgatg tgacgggcat gattctagaa gaaggtgcgc ccgaggggac cgtggccaca
3241 ctgctcatca agagaccaac tggagagctc atgcctctgg cagccagaat ggggacccat
3301 gcaaccatga aaattcaggg gcgcacagtt ggagggcaaa tgggtatgct cctgacagga
3361 tccaacgcca agagtatgga cctaggcaca acaccaggcg actgcggctg cccctacatc
3421 tacaagaggg ggaatgacta cgtggtcata ggagtccata cggccgctgc ccgtggagga
3481 aacactgtca tatgtgccac ccaggggagt gagggagaag ccacacttga aggaggtgac
3541 agtaaaggga catactgtgg cgcaccaatc ttgggcccag ggagcgctcc gaagctcagt
3601 accaagacta agttttggag atcatccaca acaccactcc cacctggcac ctacgaacca
3661 gcctacctcg gtggcaaaga ccctagagtc aaaggtggcc cttcattgca acaagttatg
3721 agggaccagc tgaagccatt cacagaaccc agaggcaaac caccaagacc aaatgtgttg
3781 gaagctgcca agaaaaccat catcaatgtc cttgagcaaa caattgatcc accccaaaaa
3841 tggtcatttg cgcaagcttg cgcatccctt gacaaaacta cctccagcgg ccacccgcac
3901 cacatgcgga aaaacgactg ttggaatggg gagtccttca caggaaaatt ggctgatcaa
3961 gcctccaagg ccaacctaat gtttgaagag ggaaagaaca tgactccagt ctacacaggt
4021 gcacttaaag atgagttggt aaagaccgat aaagtttatg gtaaggtcaa gaagaggctt
4081 ctgtggggtt cagatctggc gaccatgata cggtgcgccc gagcttttgg aggccttatg
4141 gatgaactca aggcacactg tgtcacactt cctgtcagag ttggtatgaa catgaatgag
4201 gatggcccca tcatctttga gaagcactcc agatatagat atcactatga tgctgattat
4261 tcccggtggg actcaacaca acaaagggat gtgctagcag cagcactaga aatcatggtt
4321 aagttctctc cagaaccaca cctggcccag atagttgcag aagacctcct ttcccctagc
4381 gtgatggatg taggtgactt tcaaatatca ataagtgagg gtctcccctc tggggtacct
4441 tgtacctccc agtggaattc catcgcccac tggctcctca ctctgtgtgc actctctgaa
4501 gtcacggacc tgtcccctga tatcattcag gccaactccc ttttctcctt ctacggtgat
4561 gatgagattg taagcacaga cataaagttg gacccagaga agctgacagc aaagctcaag
4621 gagtacgggc tgaaaccaac ccgccccgac aaaactgaag gaccccttgt tatctctgaa
4681 gacctggatg gcctgacatt cctccggaga actgtgaccc gtgatccagc tggctggttt
4741 ggaaaattgg aacaaagttc aattctcagg caaatgtact ggaccagggg tcccaaccat
4801 gaagacccat ttgaaacaat gataccacac tcccaaagac ccatacaatt gatgtccttg
4861 ctgggcgagg ctgcactcca cggcccggca ttctatagca gaattagcaa attagtcatt
4921 gcagagttga aggaaggtgg catggatttt tacgtaccca gacaagagcc aatgttcaga
4981 tggatgagat tctcagatct gagcacgtgg gagggcgatc gcaatctggc tcccagtttt
5041 gtgaatgaag atggcgtcga gtgacgccaa cccatctgat gggtccgcag ccaacctcgt
5101 cccagaggtc aacaatgagg ttatggctct ggagcccgtt gttggtgccg ccattgcggc
5161 acctgtagcg ggccaacaaa atgtaattga cccctggatt agaaataatt ttgtacaagc
5221 ccctggtgga gagtttacag tatcccctag aaacgctcca ggtgaaatac tatggagcgc
5281 gcccttgggc cctgatctaa atccctacct atcccatttg gccagaatgt acaatggtta
5341 tgcaggtggt tttgaagtgc aggtaattct cgcggggaac gcgttcaccg ccgggaaggt
5401 catatttgca gcagtcccac caaattttcc aactgaaggc ttgagcccca gccaggtcac
5461 tatgttcccc catatagtag tagatgttag gcaactagaa cctgtgttga ttcccttacc
5521 cgatgttagg aataatttct atcattacaa tcaatcaaat gaccccacca ttaagttgat
5581 agcaatgttg tatacaccac ttagggctaa taatgctggg gatgatgtct tcacagtttc
5641 ttgccgagtt ctcacgagac catcccccga ttttgatttc atatttctag tgccacccac
5701 agttgagtca agaaccaaac cattctctgt cccagtttta actgttgagg agatgaccaa
5761 ttcaagattc cccattcctt tggaaaagtt gttcacgggt cccagcagtg cctttgttgt
5821 ccaaccacaa aacggtaggt gcacgactga tggcgtgctc ctaggcacca cccaactgtc
5881 tcctgtcaac atctgcacct tcagaggaga tgtcacccat atcacaggta gtcgtaacta
5941 cacaatgaat ttggcttctc aaaattggag caattatgac ccaacagaag aaatcccagc
6001 ccctctagga actccagatt ttgtggggaa gattcaaggc gtgctcaccc aaaccacaag
6061 gacagatggc tcaacacgcg gccacaaagc cacagtgtac actgggagcg ccgactttgc
6121 tccaaaactg ggtagagttc aatttgaaac tgacacagac cgtgattttg aagctaacca
6181 aaacacaaag ttcaccccag ttggtgtcat ccaagatggt ggcaccaccc accgaaatga
6241 accccaacag tgggtgctcc caagttactc aggcagaaat actcctaatg tgcatctggc
6301 ccccgctgta gcccccactt ttccgggtga gcaacttctc ttcttcagat ccaccatgcc
6361 cggatgcagc gggtacccca acatggattt ggactgtctg ctcccccagg aatgggtgca
6421 gtacttctac caagaggcag ccccagcaca atctgatgtg gctctgctaa gatttgtgaa
6481 tccagacaca ggtagggttt tgtttgagtg taagcttcat aaatcaggct atgttacagt
6541 ggctcacact ggccaacatg atttggttat cccccccaat ggttatttta ggtttgattc
6601 ctgggtcaac cagttttaca cgcttgcccc catgggaaat ggaacggggc gtagacgtgc
6661 actataatgg ctggagcttt ctttgctgga ttggcatctg atgtccttgg ctctggactt
6721 ggttccctta tcaatgctgg ggctggggcc atcaaccaaa aagttgagtt tgaaaataac
6781 agaaaattgc aacaagcatc cttccaattt agcagcaatc tacaacaggc ttcctttcaa
6841 catgacaaag agatgctcca agcacaaatt gaggccacca aaaggctaca acaggaaatg
6901 atgaaagtta agcaggcaat gctcctagag ggtgggttct ctgagacaga tgcagcccgc
6961 ggggcaatca acgcccccat gacaaaagct ttggactgga gcgggacaag gtactgggct
7021 cccgatgcta ggactacaac atacaatgca ggccgctttt ccacccctca accatcgggg
7081 gcactgccag gaagagctaa tcttagggat gctgtccctg ctcggggttc ctccagtaag
7141 tcttctaatt cttctactgc tacttctgtg tactcaaatc aaactacttc aacgagactt
7201 ggttctacag ctggttctgg taccagtgtc tcgagcttcc cgtcaactgc aaggactagg
7261 agctgggttg aggatcaaag taggaatttg tcacctttca tgaggggggc ccacaacata
7321 tcgtttgtca ccccaccatc tagcagatcc tctagccaag gcacagtctc aaccgtgcct
7381 aaagggattt tggactcctg gactggcgct ttcaacacgc gcaggcagcc actcttcgct
7441 cacattcgta agcgagggga gtcacgggcg taatgtgaaa agacaaaatt gattaccttt
7501 cttttcttt
//