Typing tool
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Typing tool
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Complete norovirus genomes
| LC048991 | GIX.1 | |
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| GII.P15 |
ORF1: 5..5101
ORF2: 5082..6749
ORF3: 6749..7480
LOCUS LC048991 7551 bp RNA linear VRL 07-JAN-2023
DEFINITION Norovirus Hu/GIX/3-250/Tokyo/1995/JPN non structural protein VP1,
VP2 genes for polyprotein, capsid protein VP1, capsid protein VP2,
complete genome.
ACCESSION LC048991
VERSION LC048991.2
KEYWORDS .
SOURCE Norovirus Hu/GIX/3-250/Tokyo/1995/JPN
ORGANISM Norovirus Hu/GIX/3-250/Tokyo/1995/JPN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus; Norovirus
GIX.
REFERENCE 1
AUTHORS Mori,K., Nagano,M., Yaoita,Y., Asakura,H., Suzuki,A., Isogai,M.,
Fujiwara,T., Nagashima,M., Suzuki,J., Tohma,K. and Sadamasu,K.
TITLE Genetic characteristics of archival noroviruses detected from the
1970s to the 1990s
JOURNAL Arch Virol 167 (12), 2723-2727 (2022)
PUBMED 36087133
REMARK DOI:10.1007/s00705-022-05595-4
REFERENCE 2 (bases 1 to 7551)
AUTHORS Mori,K.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2015) Contact:Kohji Mori Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; 3-24-1
Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan URL
:http://www.tokyo-eiken.go.jp/
COMMENT On Sep 23, 2022 this sequence version replaced LC048991.1.
FEATURES Location/Qualifiers
source 1..7551
/organism="Norovirus Hu/GIX/3-250/Tokyo/1995/JPN"
/mol_type="genomic RNA"
/strain="Hu/GIX/3-250/Tokyo/1995/JPN"
/isolation_source="human feces"
/host="Homo sapiens"
/db_xref="taxon:1646491"
/country="Japan: Tokyo"
/collection_date="1995"
/note="genogroup: GVIX"
gene 5..5101
/gene="non structural protein"
CDS 5..5101
/gene="non structural protein"
/codon_start=1
/product="polyprotein"
/protein_id="BAW33735.2"
/translation="MKMASNDVATAFGSQKATNDSYSTTPPNKEEASVLTNVKVGFKK
ILGAVPKASRQHGNIQKPPIVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST
VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP
AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD
LNDSWLNRRSINRTTGFFKPYQTWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD
LLGKLKPLNLLNLLASCDWTFAGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLNAYMKTLDMEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL
ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP
DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL
TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN
VRTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVASQTANEVHTAL
LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSESPQEEEQPS
SEEATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK
YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT
GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN
LLITTTHVLPKGVRELFGVDIKQIQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT
VCSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC
GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGL
GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR
GKPPNPSVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN
GESFTGPLADQASKANLMYEQAKHVSPVYTAALKDELVKTDKIYNKIKKRLLWGSDLG
TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS
TQQRCILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS
QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE
YGLVPTRPDKTEGPLVITENLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN
HENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA
MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
gene 5082..6749
/gene="VP1"
CDS 5082..6749
/gene="VP1"
/note="structural protein"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BAW33736.2"
/translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG
QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG
GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP
DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV
PPSVESKLKQFTLPNLQPNEMTNSRFPTGITQLYTSPNTNLVVQFQNGRCLLDGTLLG
TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLREPDGEEFSPTGPNPAPVGT
PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ
PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGSI
PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF
ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL"
gene 6749..7480
/gene="VP2"
CDS 6749..7480
/gene="VP2"
/note="structural protein"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BDS00293.1"
/translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA
SFQHDKDMLSSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWSG
TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSEGSTHQTGSSTGSVSSLSTSSTRV
PSSTSSSSSTSRTRDWVSEQQRLSPFMRGSLQTAYVTPPSSSASSVSSVSTVPHYVLD
SWTPSFNTKHLPLFAHVKKRGQSQV"
ORIGIN
1 gtgaatgaag atggcgtcga atgacgtcgc tactgccttt ggcagccaga aagctaccaa
61 tgacagctat agcacaaccc ctcccaacaa ggaggaggct agtgtgctca ccaacgttaa
121 agttggtttt aaaaagatcc tcggggccgt tcccaaggct tcgagacagc atggcaacat
181 acaaaaaccg ccgatcgttg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc
241 aaacggcgag gacgcggttc actttgtgaa ggaaacggag accatcaagg gattgccaga
301 tttgtccacc gtggaaaacg aatctgaaca ctccccatac acagtcccac cgctgagtga
361 gagggaacac aggccagcaa cagaacccct gcctggcact atacttgaga tgtgggatgg
421 tgagttttac cactactcca tatatgtgga taatggcaag gctcttggtg tgcacaaacc
481 accagcagca atcagcctag caacgataga tttaacacct atatcgttgt attggagacc
541 ggtgtataca ccgccgtacc ttgttcaccc agagacactc aaagggctgg ctggtgaaaa
601 gtttccctac acagctttca gcaacaactg ctacaacttc tgttgctggg ttctggacct
661 caatgattca tggctgaacc ggaggtccat aaataggaca actggattct tcaaacccta
721 ccaaacctgg aacaggaaac ccctcccaac tgtggatgat ggtaagatca agaaggtcgc
781 aaatgcagtt ctgtgcgccc taggatcact tttctcaaaa cccattaagg acctccttgg
841 gaagctaaag ccccttaatc tcctaaatct gctcgcatca tgtgactgga cctttgctgg
901 tgtagtagaa acagtcattc ttgcagcaga gctcttcaat gtcttttgga ccccacctga
961 tgtctctaac ttcattgcct ccataattgg tgactttgag atgcaaggac cagaagacct
1021 tgctgtggag cttgttcccg ttgtcatggg aggcattggt atggtgttag gatttacagc
1081 tgagaagata gggcgcatgt tatcatctgc agcatccact cttagagctt gtaaggacct
1141 tggcaattac gccctggaca ttctaaagct ggtcatgaaa tggttcttcc ccaagaagga
1201 ggagaaggcc gagatggaaa ctctaagagc cattgaggat gccgtccttg acatggaggc
1261 aattggcaac aaccacctca caacattgct caaagacaag gacagcctaa acgcctacat
1321 gaagacctta gacatggagg aggaaaaggc caggaaactc tcaaccaaat catcatcacc
1381 cgacattgtt ggcaccatca atgcaatcct tgcccgcatc gccgctgcaa gatcactcct
1441 gcacaaagcc aaagaggaga tgttcagtcg ggcgaggcct gttgtcgtga tggtctccgg
1501 gagacccggg atcggtaaga cttacctggc tagacaactt gctaagtcaa ttgcaaacag
1561 catgagtggt gaccagaggg taggacttgt cccccgcaat ggggttgacc actgggatgc
1621 ctataggggt gagagagtcg tcctgtggga tgactatggt atgggaaaca caattaaaga
1681 tgccctgact ctacaggagt tggcagacac ctgcccagtc accctcaatt gtgacagaat
1741 cgagaacaag gggaagatgt ttgacagtga tgtcatcata attacaacca atcttgtcaa
1801 ccccgccccc ctcgattacg tcaactttga ggcttgctgt aggcgaattg acttccttgt
1861 ctatgccgag gcaccagaca ttgagaaagt caaaaaggat ttccctgggc aaccagacat
1921 gtggcgtgac catttcaaag ctgattcatc acatataaag ttgtcattag ccccacaggg
1981 tggtttcgac aaaaatggaa acacccctca tgggaagggc accatgaaaa ccctcacgct
2041 gcactcactc actgcacgtg tgatgggctt agtgtgtgag agaaaggatg agttccaatt
2101 acagggggat gaactgcagg tttacaactt tgacacaaac aaagtctctg catttagaaa
2161 gttggcagct gacaacaagt acagttttgt ggagacaatg aaagttggtg cggtcctcaa
2221 gaatgtgcga actctggaag acctaaaatc tgccctcaaa ggagtcaagt tcaaggagtg
2281 tgaaataatc tacaaagggg ctaagtacag ggtggcctcg gatggctgtg gcagtgtctc
2341 ggtctctaag atcaaggatg ttgcatcaca gacagccaat gaagtgcaca cagcgctcct
2401 gagactgagg caggcccggg ccagatacta catcagctgc ttccaagatc ttatctacac
2461 cctgattcag gttgctggag cctcatttgt ggtgcatagg atctcaaaga gattctcctg
2521 ggaccgttgg attaaaccca gtgagagccc tcaagaggaa gaacaaccca gcagtgagga
2581 ggccacaggg agatgggaaa ttgagccaaa ggacacagac cctgaaggta aaaagggtaa
2641 aaacaagaag ggaaggggga ggaaacacac agccttctct agcaagggtc ttagtgatga
2701 agagtacgat gagttcaaga gaatcagaga ggagaagaac ggcaagtact ctatagaaga
2761 atacctccag gaccgtgata gattttatga ggaagtagca gttgcaaggg ccacggaaga
2821 agacttctgt gaagaagagg tggcgaaaat caggcagagg attttcagac ccacaaagaa
2881 gcagaggaag gaggaacgag gcgtccttgg actagtcacc ggttcagaaa tcaggaagag
2941 aagaccagat gacttccagc ctaaaggtaa tttgtgggct gatgacacca ggagcgtgga
3001 ctacaacgag aagctggaat ttgaagcccc tccaagtgtg tggtcacgca tcgtacccct
3061 tggcactggt tggggttttt gggtctcctc caacctcctc ataacaacaa cgcacgtcct
3121 gccaaaagga gtgagagagc tgttcggagt tgacatcaaa caaattcaga tacacaaatc
3181 aggtgagttt tgcaggttca ggtttccaag accgatcaga ccagatgtca caggcctcat
3241 ccttgaagaa ggagcccctg aaggcacggt gtgttctatt ctcatcaaaa gaccgactgg
3301 agagatgata ccactcgcag tgaggatggg cacccacgct tccatgaaaa ttcagggcag
3361 aacagttggt ggtcaaatgg gcatgttgct cacaggggca aatgccaaaa acatggacct
3421 gggcacgaac cctggtgact gtggctgccc gtacattttt aaaaggggca atgacattgt
3481 ggtagctggg gttcataccg cagctgcaag gggtggcaac actgtgatct gtgccacgca
3541 gggggctgac ggagaggccg ttcttgaagg aggagaggac aaaggaacat actgtggtgc
3601 cccaatactt ggacttggga aggcccccaa actcagcact aagacaaagt tttggcgttc
3661 ctcacctgat gcactacccc cgggaacgta tgaaccagcc tatctaggtg gaaaagaccc
3721 aagagttgag aagggcccat cactccagca ggttatgaga gaacaactta aacccttcac
3781 cgaacccaga ggaaaaccgc caaatcccag cgttcttgat gaggcaaaga aaactgtgat
3841 gaatgtgttg gagcaaacca taaaccctgc caaaccttgg tcatattccc aagcatgtgc
3901 ttcacttgac aaaacgactt caagtggtag cccacaccac ctgaggaaga atgatcactg
3961 gaatggtgag tctttcaccg gccctttagc cgaccaagct tcaaaggcaa acttaatgta
4021 tgaacaggca aaacacgtga gccccgttta tactgcagcc ctcaaagatg aactagtcaa
4081 gactgacaag atttacaata agataaagaa gaggttgcta tggggttctg acctgggcac
4141 catggtcagg tgtgccagag cctttggtgg gttgatggac agcatgaaag agagttgcgt
4201 gatgttgccc tgcagagttg gaatgaacat gaatgaggat gggccaatca tttttgacaa
4261 acatgcaaaa tataaatacc actatgatgc agattactcc agatgggatt ccacacagca
4321 aagatgcatc ttgtctgctg ccatggaagt tatggtgaaa ttctcagctg aaccggaatt
4381 ggcacaggtg gtagctgaag acttactcgc cccgagccaa ctcgacgtgg gcgattttgt
4441 ggtgtcagtt caagaaggcc ttccttcagg tgtcccatgt acctcccagt ggaactctat
4501 agcacactgg atcattaccc ttagtgcaat ggcagaagtc tctggtctct ccccagatgt
4561 gatccaagcc cactcatgct tctcttttta cggtgatgat gagatagtta gcacagatat
4621 taatctggac ccagcaaaat taaccttgaa acttagggaa tatggattgg tccccaccag
4681 accagacaaa actgagggcc cactagtcat cacagagaac ctccacgggt tgaccttcct
4741 acgcaggcat atcacacgag accctgctgg atggtttggt aaattagatc aggattcaat
4801 cttgaggcag ctctattgga ccagaggacc caaccatgag aatccctatg agagcatggt
4861 tccacactca cagcgcgcga cccagctaat ggcgctgttg ggtgaggcat cgctacacgg
4921 tccccagttt tacaagaaag ttagcaagat ggttatcaat gagatcaaga gtggtggtct
4981 ggaattttac gtgcccagac aggaggccat gttcagatgg atgagattct ctgacctcag
5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg
5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag
5161 tcttgccttt agagcccgtc gcgggagttc agctggctgc tcccgttgca gggcaaagta
5221 atataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg
5281 tgtcccctcg gaacgcaccg ggtgaggtac ttattgattt agaattagga ccagaattaa
5341 atccctatct caatcacctt gcaagaatgt ataatgggta tgtaggagga atggaggtgg
5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttgtttgca gctgtgcccc
5461 ccagcttccc aacccatggt atctctgcag cacaggcaac tatgctacca catgtgattg
5521 tggatgtcag gcagctggag cctgtccggc tccccctccc tgacgtcagg aatgtgatgt
5581 tccatttctg tcaagagaac aaggagccgc gtatgagaat tgtggcaata ttgtacaccc
5641 ccctccgtgc caacggtgcg ggtgatgatg ttttcactgt ctcatgtcgt gtgctaacaa
5701 gaccctcacc agattttgat tttattttct tggtcccccc ctctgtagag agtaagttga
5761 aacagtttac cctcccaaac ctgcagccaa atgagatgac caattcaaga tttcctacag
5821 gtatcacaca gctttacacc agtccaaaca ccaatttggt tgtccagttc caaaatggca
5881 ggtgtctgct tgatggtaca cttcttggca ccacccctgt cagagctgct gacatctgca
5941 gttttagagg ggttacatca actgaagtag atgcaactga cagccctagg gtggcagggt
6001 cacatagaat tatggtacag cttagggagc cagatggaga ggagttttca cccacaggtc
6061 ccaaccctgc ccctgttggc accccagact ttcaagcagc catatttggc actctcagtc
6121 aaagaaatac tggcggagct gggcagaatt ctaacagagc ccacttcgca tacttctata
6181 caagaaaccc cacatttgca ccaggcatag ggactgttgt attttctttt gacactactg
6241 atttccaaaa tcgtcaacct accaaatttt ctccttctgg tgtgtttgat gatgattctt
6301 ctgagccttt caatcagttt tccctgccat attacaatgg atcactcggt gcagtggacg
6361 ctggaaaact ggctccgcct gtggcaccca attatccagg tgagcagatt ctttatttta
6421 gagggagtat acctttcaaa ggtgggtatg gagaaggtga gattgacagt ttgcttcccc
6481 aggaatggat tacccacttc tatgcagagc aggcccccac acaaggtgac gcagccctgc
6541 tgcgctacta caaccctgac actggtagag tcctctttga gtgcaaactc caccgcgaag
6601 gattcatcac aatcaactac acgggatcca atgctcttgc tgtaccagtc aatggagtct
6661 tcaggtttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaatg
6721 gccgcagggg tagaagaagg gagttataat ggctggagct ttctttgcag gtcttgcttc
6781 tgatgttctt ggcagcggtt tgtcttctct tattggtgcc ggtgccaatg ctataaacca
6841 aaaagttgaa tatgattaca ataggcattt gcaatcagct tcttttcaac atgataagga
6901 catgcttagc tcacaggtgg aagccacaaa gcacctgcag agggaaatga tggccatcaa
6961 ggaaggcatg ctgctcaagg gcgggttttc ccccactgat gcagcaaggg gggctgtcaa
7021 cgcccctatg acacaaatct tggactggag tggcaccaga tattgggccc caggtgcaat
7081 gaaaactacg gcctattcag gccgttttgt cagccaatcc actcacaggc ccattcccaa
7141 tgttgtgcac aagagtgagg gatccacaca ccaaactggg tcatccaccg gatctgtctc
7201 ttctctttcc acatcatcca cccgtgttcc atcatctaca tcctcatcta gtagtacttc
7261 tagaacaaga gactgggtgt ctgaacaaca aagactcagc cctttcatga gaggctctct
7321 tcaaactgca tatgtaactc ctccctcaag ctctgcctct tcagtaagct ctgtttctac
7381 agtcccacac tatgttttag attcatggac tccttctttt aacactaagc atttacccct
7441 gtttgcccat gttaagaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat
7501 tgatttgttt tgtaattagt gaaatgttga ttcttttcta attcggcatt t
//