Human calicivirus
Typing tool

Complete norovirus genomes

LC048964  GII.4 Farmington Hills
 GII.P4 US95

Length: 3,254 | 3 CDS 

ORF1: 1..802
ORF2: 783..2402
ORF3: 2402..3208

LOCUS       LC048964                3254 bp    RNA     linear   VRL 27-DEC-2016
DEFINITION  Norovirus Hu/GII/3-215/Tokyo/1995/JPN genes for non structural
            protein, structural protein (VP1), minor capsid protein (VP2),
            partial and complete cds.
ACCESSION   LC048964
VERSION     LC048964.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII/3-215/Tokyo/1995/JPN
  ORGANISM  Norovirus Hu/GII/3-215/Tokyo/1995/JPN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE   1
  AUTHORS   Mori,K.
  TITLE     Genotypes of Norovirus detected in community gastroenteritis in
            Tokyo
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3254)
  AUTHORS   Mori,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2015) Contact:Kohji Mori Tokyo Metropolitan
            Institute of Public Health, Department of Microbiology; 3-24-1
            Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan URL
            :http://www.tokyo-eiken.go.jp/
FEATURES             Location/Qualifiers
     source          1..3254
                     /organism="Norovirus Hu/GII/3-215/Tokyo/1995/JPN"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII/3-215/Tokyo/1995/JPN"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:1646464"
                     /geo_loc_name="Japan: Tokyo"
                     /collection_date="1995"
     CDS             <1..802
                     /note="polyprotein"
                     /codon_start=2
                     /product="non structural protein"
                     /protein_id="BAW33680.1"
                     /translation="RWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVG
                     DFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEI
                     VSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFG
                     KLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV
                     IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            783..2402
                     /gene="VP1"
     CDS             783..2402
                     /gene="VP1"
                     /codon_start=1
                     /product="structural protein"
                     /protein_id="BAW33681.1"
                     /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNVIDPWIRSNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
                     FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSAVNICTFRGDVTHIAGSHDYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKNQGLL
                     SQTTRGDGSTRAHKATVSTGSVHFTPKLGSVQYTTDTNNDFETGQNTKFTPVGVIQDG
                     NNHQNEPQQWALPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
                     LLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGPHDLVI
                     PPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
     gene            2402..3208
                     /gene="VP2"
     CDS             2402..3208
                     /gene="VP2"
                     /codon_start=1
                     /product="minor capsid protein"
                     /protein_id="BAW33682.1"
                     /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGMMKVKQAMLLEGGFSETDAARGAIN
                     APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLRATVPARGSSSTPS
                     SISTATSVYSNQTVSTRLGSSAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGALNT
                     SFVTPPSSRFSSQGTFSTAPNEILDSWTRAFNTRRQPLFAHIRKRGESRV"
ORIGIN      
        1 tcggtgggat tcaacacaac agagagccgt gttggcagca gccctagaaa tcatggttaa
       61 attctcctca gaaccacatt tggctcaggt agtcgcagag gaccttcttt ctcctagcgt
      121 ggtggatgtg ggtgacttca aaatatcaat caatgagggt ctcccctctg gggtgccctg
      181 cacctcccaa tggaactcca tcgcccactg gcttctcact ctctgtgcgc tctctgaagt
      241 tacaaacttg tcccctgata tcatacaggc taattccctc ttctcctttt atggtgatga
      301 tgaaattgtt agcacagata taaagttgga cccggagaaa ttgacagcaa aactcaagga
      361 atacgggttg aaaccaaccc gccctgacaa gactgaaggg ccccttgtta tttctgaaga
      421 cttaaatggt ctaaccttcc tgcggagaac tgtgacccgc gacccagctg gttggtttgg
      481 aaaattggag cagagctcaa tactcagaca aatgtactgg actaggggcc ccaaccatga
      541 agacccatct gaaacaatga ttccacattc ccaaagaccc atacaattga tgtccctact
      601 gggagaggcc gcactccacg gcccagcatt ctacagcaaa attagcaagt tagttattgc
      661 agagctaaaa gagggtggca tggattttta cgtgcccagg caagagccaa tgttcagatg
      721 gatgagattc tcagatctga gcacgtggga gggcgatcgc aatctggctc ccagttttgt
      781 gaatgaagat ggcgtcgaat gacgccaacc catctgatgg gtccacagcc aacctcgtcc
      841 cagaggtcaa caatgaggtt atggctttgg agcccgttgt tggtgccgct atcgcggcac
      901 ctgtagcggg ccaacaaaat gtaattgacc cctggattag aagtaatttt gtacaagccc
      961 ctggtggaga gtttacagta tcccctagaa acgctccagg tgagatacta tggagcgcgc
     1021 ccttgggccc tgatttgaat ccctatcttt ctcatttggc cagaatgtac aatggttatg
     1081 caggtggttt tgaagtgcag gtaatcctcg cggggaacgc gttcaccgcc gggaaaatca
     1141 tatttgcagc agtcccacca aattttccaa ctgaaggctt gagccccagc caggttacta
     1201 tgttccccca tataatagta gatgttaggc aattggaacc tgtgttgatc cccttacctg
     1261 atgttaggaa caatttctat cattacaacc aatcaaatga ttctaccatt aaattgatag
     1321 caatgctgta tacaccactt agggctaaca atgctgggga tgatgtcttc acagtctctt
     1381 gtcgagtcct cacgaggcca tcccccgatt ttgatttcat attcttggtg ccacccacag
     1441 ttgaatcaag aactaaacca ttcaccgtcc caatcttaac tgttgaggaa atgtccaatt
     1501 caagattccc cattcctttg gaaaagttgt acacgggacc cagcagtgct tttgttgtcc
     1561 aaccacaaaa tggcaggtgc acgactgatg gcgtgctcct aggcactacc cagctgtctg
     1621 ctgtcaacat ctgcaccttc agaggggatg tcacccacat tgcaggcagc catgattata
     1681 caatgaattt ggcttctcaa aattggaaca attatgaccc aacagaagaa atcccagccc
     1741 ctctgggaac tccagacttc gtaggaaaga accaaggctt gctctcccaa accacaagag
     1801 gggatggctc tacccgcgcc cacaaagcta cagtgagcac tgggagtgtc cacttcactc
     1861 caaagctggg cagtgttcaa tacaccactg acacaaacaa tgattttgaa actggccaaa
     1921 acacaaaatt caccccagtc ggcgtcatcc aggacggtaa taaccatcaa aatgaacccc
     1981 agcaatgggc actcccaaat tactcaggta gaactggtca taatgtgcac ctagcccctg
     2041 ccgttgcccc cacttttccg ggtgagcaac ttcttttctt tagatccact atgcccggat
     2101 gtagcgggta tcccaacatg aatctggatt gcctactccc ccaggaatgg gtgcagcact
     2161 tctaccaaga agcagctcca gcacaatctg atgtggctct gctgagattt gtgaatccag
     2221 acacaggtag ggtcctgttt gagtgcaagc tccataaatc gggctatgtc acagtggctc
     2281 acactggccc gcatgatttg gttatccccc ccaatggtta ctttagattt gattcctggg
     2341 tcaaccagtt ctacacactt gcccccatgg gaaatggagc ggggcgtaga cgtgcattat
     2401 aatggctgga gctttctttg ctggattggc gtctgatgtc cttggctctg gacttggttc
     2461 cctaatcaat gctggggctg gggccatcaa ccaaaaagtt gaatttgaaa ataatagaaa
     2521 attgcaacaa gcttccttcc aatttagtag caatctacaa caggcttcct tccaacatga
     2581 taaagagatg ctccaagcgc aaattgaggc cactcaaaaa ttgcaacagg gtatgatgaa
     2641 ggttaaacag gcaatgctcc tagagggtgg attctctgaa acagatgcag cccgtggggc
     2701 aatcaacgcc cccatgacaa aggctctgga ctggagcgga acaagatact gggcccctga
     2761 tgccaggacc acaacataca atgcaggccg cttttccacc cctcaacctt cgggggcact
     2821 gccaggaaga actaatctta gggctactgt ccccgctcgg ggttcctcta gtacaccttc
     2881 tagtatttcc actgctactt ctgtgtattc aaatcaaact gtttcaacga gacttggttc
     2941 ttcagctggt tctggtacca gtgtctcgag tctcccgtca actgcaagga ctaggagctg
     3001 ggttgaggat caaaacagaa atttatcacc ttttatgagg ggggctctca acacatcatt
     3061 cgtcacccca ccatctagta gattctctag ccaaggcaca ttctcaactg cgcctaatga
     3121 aattttggac tcctggacta gagctttcaa cacgcgcagg cagcctctct tcgctcacat
     3181 ccgtaagcga ggggagtcac gggtgtaatg tgaaaagaca aaattgatta tctttccctt
     3241 ctttagtgtc tttt
//