Typing tool
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Complete norovirus genomes
LC048964 | GII.4 Farmington Hills | ||
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GII.P4 US95 |
ORF1: 1..802 ORF2: 783..2402 ORF3: 2402..3208LOCUS LC048964 3254 bp RNA linear VRL 27-DEC-2016 DEFINITION Norovirus Hu/GII/3-215/Tokyo/1995/JPN genes for non structural protein, structural protein (VP1), minor capsid protein (VP2), partial and complete cds. ACCESSION LC048964 VERSION LC048964.1 KEYWORDS . SOURCE Norovirus Hu/GII/3-215/Tokyo/1995/JPN ORGANISM Norovirus Hu/GII/3-215/Tokyo/1995/JPN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Mori,K. TITLE Genotypes of Norovirus detected in community gastroenteritis in Tokyo JOURNAL Unpublished REFERENCE 2 (bases 1 to 3254) AUTHORS Mori,K. TITLE Direct Submission JOURNAL Submitted (10-APR-2015) Contact:Kohji Mori Tokyo Metropolitan Institute of Public Health, Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan URL :http://www.tokyo-eiken.go.jp/ FEATURES Location/Qualifiers source 1..3254 /organism="Norovirus Hu/GII/3-215/Tokyo/1995/JPN" /mol_type="genomic RNA" /strain="Hu/GII/3-215/Tokyo/1995/JPN" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1646464" /country="Japan: Tokyo" /collection_date="1995" CDS <1..802 /note="polyprotein" /codon_start=2 /product="non structural protein" /protein_id="BAW33680.1" /translation="RWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVG DFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEI VSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFG KLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 783..2402 /gene="VP1" CDS 783..2402 /gene="VP1" /codon_start=1 /product="structural protein" /protein_id="BAW33681.1" /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRSNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICTFRGDVTHIAGSHDYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKNQGLL SQTTRGDGSTRAHKATVSTGSVHFTPKLGSVQYTTDTNNDFETGQNTKFTPVGVIQDG NNHQNEPQQWALPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC LLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGPHDLVI PPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" gene 2402..3208 /gene="VP2" CDS 2402..3208 /gene="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="BAW33682.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLRATVPARGSSSTPS SISTATSVYSNQTVSTRLGSSAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGALNT SFVTPPSSRFSSQGTFSTAPNEILDSWTRAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 tcggtgggat tcaacacaac agagagccgt gttggcagca gccctagaaa tcatggttaa 61 attctcctca gaaccacatt tggctcaggt agtcgcagag gaccttcttt ctcctagcgt 121 ggtggatgtg ggtgacttca aaatatcaat caatgagggt ctcccctctg gggtgccctg 181 cacctcccaa tggaactcca tcgcccactg gcttctcact ctctgtgcgc tctctgaagt 241 tacaaacttg tcccctgata tcatacaggc taattccctc ttctcctttt atggtgatga 301 tgaaattgtt agcacagata taaagttgga cccggagaaa ttgacagcaa aactcaagga 361 atacgggttg aaaccaaccc gccctgacaa gactgaaggg ccccttgtta tttctgaaga 421 cttaaatggt ctaaccttcc tgcggagaac tgtgacccgc gacccagctg gttggtttgg 481 aaaattggag cagagctcaa tactcagaca aatgtactgg actaggggcc ccaaccatga 541 agacccatct gaaacaatga ttccacattc ccaaagaccc atacaattga tgtccctact 601 gggagaggcc gcactccacg gcccagcatt ctacagcaaa attagcaagt tagttattgc 661 agagctaaaa gagggtggca tggattttta cgtgcccagg caagagccaa tgttcagatg 721 gatgagattc tcagatctga gcacgtggga gggcgatcgc aatctggctc ccagttttgt 781 gaatgaagat ggcgtcgaat gacgccaacc catctgatgg gtccacagcc aacctcgtcc 841 cagaggtcaa caatgaggtt atggctttgg agcccgttgt tggtgccgct atcgcggcac 901 ctgtagcggg ccaacaaaat gtaattgacc cctggattag aagtaatttt gtacaagccc 961 ctggtggaga gtttacagta tcccctagaa acgctccagg tgagatacta tggagcgcgc 1021 ccttgggccc tgatttgaat ccctatcttt ctcatttggc cagaatgtac aatggttatg 1081 caggtggttt tgaagtgcag gtaatcctcg cggggaacgc gttcaccgcc gggaaaatca 1141 tatttgcagc agtcccacca aattttccaa ctgaaggctt gagccccagc caggttacta 1201 tgttccccca tataatagta gatgttaggc aattggaacc tgtgttgatc cccttacctg 1261 atgttaggaa caatttctat cattacaacc aatcaaatga ttctaccatt aaattgatag 1321 caatgctgta tacaccactt agggctaaca atgctgggga tgatgtcttc acagtctctt 1381 gtcgagtcct cacgaggcca tcccccgatt ttgatttcat attcttggtg ccacccacag 1441 ttgaatcaag aactaaacca ttcaccgtcc caatcttaac tgttgaggaa atgtccaatt 1501 caagattccc cattcctttg gaaaagttgt acacgggacc cagcagtgct tttgttgtcc 1561 aaccacaaaa tggcaggtgc acgactgatg gcgtgctcct aggcactacc cagctgtctg 1621 ctgtcaacat ctgcaccttc agaggggatg tcacccacat tgcaggcagc catgattata 1681 caatgaattt ggcttctcaa aattggaaca attatgaccc aacagaagaa atcccagccc 1741 ctctgggaac tccagacttc gtaggaaaga accaaggctt gctctcccaa accacaagag 1801 gggatggctc tacccgcgcc cacaaagcta cagtgagcac tgggagtgtc cacttcactc 1861 caaagctggg cagtgttcaa tacaccactg acacaaacaa tgattttgaa actggccaaa 1921 acacaaaatt caccccagtc ggcgtcatcc aggacggtaa taaccatcaa aatgaacccc 1981 agcaatgggc actcccaaat tactcaggta gaactggtca taatgtgcac ctagcccctg 2041 ccgttgcccc cacttttccg ggtgagcaac ttcttttctt tagatccact atgcccggat 2101 gtagcgggta tcccaacatg aatctggatt gcctactccc ccaggaatgg gtgcagcact 2161 tctaccaaga agcagctcca gcacaatctg atgtggctct gctgagattt gtgaatccag 2221 acacaggtag ggtcctgttt gagtgcaagc tccataaatc gggctatgtc acagtggctc 2281 acactggccc gcatgatttg gttatccccc ccaatggtta ctttagattt gattcctggg 2341 tcaaccagtt ctacacactt gcccccatgg gaaatggagc ggggcgtaga cgtgcattat 2401 aatggctgga gctttctttg ctggattggc gtctgatgtc cttggctctg gacttggttc 2461 cctaatcaat gctggggctg gggccatcaa ccaaaaagtt gaatttgaaa ataatagaaa 2521 attgcaacaa gcttccttcc aatttagtag caatctacaa caggcttcct tccaacatga 2581 taaagagatg ctccaagcgc aaattgaggc cactcaaaaa ttgcaacagg gtatgatgaa 2641 ggttaaacag gcaatgctcc tagagggtgg attctctgaa acagatgcag cccgtggggc 2701 aatcaacgcc cccatgacaa aggctctgga ctggagcgga acaagatact gggcccctga 2761 tgccaggacc acaacataca atgcaggccg cttttccacc cctcaacctt cgggggcact 2821 gccaggaaga actaatctta gggctactgt ccccgctcgg ggttcctcta gtacaccttc 2881 tagtatttcc actgctactt ctgtgtattc aaatcaaact gtttcaacga gacttggttc 2941 ttcagctggt tctggtacca gtgtctcgag tctcccgtca actgcaagga ctaggagctg 3001 ggttgaggat caaaacagaa atttatcacc ttttatgagg ggggctctca acacatcatt 3061 cgtcacccca ccatctagta gattctctag ccaaggcaca ttctcaactg cgcctaatga 3121 aattttggac tcctggacta gagctttcaa cacgcgcagg cagcctctct tcgctcacat 3181 ccgtaagcga ggggagtcac gggtgtaatg tgaaaagaca aaattgatta tctttccctt 3241 ctttagtgtc tttt //