Human calicivirus
Typing tool

Complete norovirus genomes

LC048948  GII.4 Yerseke
 GII.P4 Hunter

Length: 3,256 | 3 CDS 

ORF1: 1..802
ORF2: 783..2402
ORF3: 2402..3208

LOCUS       LC048948                3256 bp    RNA     linear   VRL 27-DEC-2016
DEFINITION  Norovirus Hu/GII/3-157/Tokyo/1994/JPN genes for non structural
            protein, structural protein (VP1), minor capsid protein (VP2),
            partial and complete cds.
ACCESSION   LC048948
VERSION     LC048948.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII/3-157/Tokyo/1994/JPN
  ORGANISM  Norovirus Hu/GII/3-157/Tokyo/1994/JPN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE   1
  AUTHORS   Mori,K.
  TITLE     Genotypes of Norovirus detected in community gastroenteritis in
            Tokyo
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3256)
  AUTHORS   Mori,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2015) Contact:Kohji Mori Tokyo Metropolitan
            Institute of Public Health, Department of Microbiology; 3-24-1
            Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan URL
            :http://www.tokyo-eiken.go.jp/
FEATURES             Location/Qualifiers
     source          1..3256
                     /organism="Norovirus Hu/GII/3-157/Tokyo/1994/JPN"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII/3-157/Tokyo/1994/JPN"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:1646448"
                     /geo_loc_name="Japan: Tokyo"
                     /collection_date="1994"
     CDS             <1..802
                     /note="polyprotein"
                     /codon_start=2
                     /product="non structural protein"
                     /protein_id="BAW33647.1"
                     /translation="RWDSTQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVG
                     DFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEATNLSPDIIQANPLFSSYGDDEI
                     VSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFG
                     KLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV
                     IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            783..2402
                     /gene="VP1"
     CDS             783..2402
                     /gene="VP1"
                     /codon_start=1
                     /product="structural protein"
                     /protein_id="BAW33648.1"
                     /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG
                     FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSHDSTLKLIAVLYTPLRTNNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSAVNICNFRGDVTHIVGSHETTMNLASQNWSNYDPTQKIPAPLGTPHFVGKIQGLL
                     TQTTRAHGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDG
                     DHHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
                     LLPHEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPFDLGI
                     PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
     gene            2402..3208
                     /gene="VP2"
     CDS             2402..3208
                     /gene="VP2"
                     /codon_start=1
                     /product="minor capsid protein"
                     /protein_id="BAW33649.1"
                     /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQAMLLEGGFSTTDAARGAIN
                     APMTKALDWSGTRYWAPDARTTTYNAGRFSTSQPSGALPGRTTPRVTVPARGHSSTLS
                     NASTATSVYSNQTVSTRLGSSAGSGTGVSSLPSTARTRNWVEDQNRNLSPFMRGALNT
                     SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN      
        1 tcgatgggat tcaacacaac agagagccgt gttagcagca gccctagaaa tcatggttaa
       61 attctcccca gaaccacatc tggctcagat agttgcagaa gaccttcttt ctcctagtgt
      121 gatggatgtg ggtgacttca aaatatcaat caatgagggt ctcccctctg gggtgccctg
      181 cacctcccag tggaactcca tcgcccactg gctcctcact ctctgcgcac tctctgaagc
      241 tacaaatctg tcccctgaca tcatacaggc taatcccctc ttctcctctt atggtgatga
      301 tgaaatcgtc agtacagata taaagctgga cccagagaaa ttgacagcaa aactcaagga
      361 atacgggcta aaaccaaccc gccctgacaa aactgaagga ccccttatta tttctgaaga
      421 cttgaatggc ctgaccttcc tgcggagaac tgtgacccgc gacccagctg gctggtttgg
      481 aaaattggaa caaagttcaa tacttaggca aatgtactgg actaggggcc ccaaccatga
      541 agacccatct gaaacaatga ttccacactc ccaaagaccc atacaattaa tgtccctact
      601 gggagaggcc gcactccacg gtccagcatt ctacagcaaa attagcaagc tagtcattgc
      661 agagctgaag gaaggtggca tggattttta cgtgcccaga caagagccaa tgttcagatg
      721 gatgagattc tcagatctga gcacgtggga gggcgatcgc aatctggctc ccagttttgt
      781 gaatgaagat ggcgtcgagt gacgccaacc catctgatgg gtccgcagcc aacctcgtcc
      841 cagaggtcaa caatgaggtt atggctttgg agcccgttgt tggtgccgct attgcggcac
      901 ctgtagcggg ccaacaaaat ataattgacc cctggattag aaataatttt gtacaagccc
      961 ctggtggaga gtttacagtg tcccctagaa acgctccagg tgagatacta tggagcgcgc
     1021 ccctgggccc tgatctgaat ccctatcttt ctcatttgtc cagaatgtat aatggttatg
     1081 caggtggttt tgaagtgcaa gtgatccttg cggggaacgc gttcaccgcc gggaaggtta
     1141 tatttgcagc ggttccacca aactttccaa ctgaaggctt aagccccagc caggttacta
     1201 tgttccccca tataattgta gatgttaggc aactggaacc tgtgttgatt cccctacctg
     1261 atgttaggaa taatttctat cattataatc aatcacatga ttctaccctt aagttgatag
     1321 cagtgctgta cacaccactt aggactaata atgccgggga tgatgtcttt acagtctctt
     1381 gtcgagttct cacgaggcca tcccccgatt ttgatttcat attcttggtg ccacccacag
     1441 ttgaatcaag aactaaacca ttcactgtcc caatcttaac cgttgaggaa atgtccaatt
     1501 caagattccc cattcctttg gaaaagttgt atacgggtcc cagcagtgct tttgttgtcc
     1561 aaccacaaaa tggcagatgc acgactgacg gcgtgctctt aggcactacc cagctgtcag
     1621 ctgtcaacat ctgcaatttt aggggggatg tcacccatat tgtgggcagc catgagacta
     1681 caatgaactt ggcttcccaa aattggagca attatgaccc aacacaaaaa atcccagccc
     1741 ccctgggaac accacatttt gtggggaaga tccaaggtct gctcacccaa accacaagag
     1801 cacatggctc gacccgtgcc cacaaagcta cagtgagcac tgggagtgtc cacttcactc
     1861 caaagctggg tagtgttcaa ttcaccactg acacaaacaa tgatttccaa actggccaaa
     1921 acacgaaatt caccccagtt ggtgtcatcc aagacggtga ccaccaccag aatgagcccc
     1981 aacaatgggt actcccgaat tattcaggta gaactggtca taatgtgcac ctggcccctg
     2041 ctgttgcccc cacttttccg ggtgagcaac tccttttctt tagatccact atgcccgggt
     2101 gtagcgggta tcccaacatg aacttggatt gcctactccc tcacgaatgg gtgctgcact
     2161 tctaccagga agcagctcca gcgcaatctg atgtggctct gctgagattt gtgaatcccg
     2221 acacaggtag ggttctgttt gagtgcaagc tccataaatc aggctatatc acagtggccc
     2281 acaccggccc gtttgacttg ggtatccccc ctaatggtta ttttagattt gattcctggg
     2341 tcaatcagtt ctacacactt gcccccatgg gaaatgggac ggggcgcagg cgtgcattat
     2401 aatggctgga gctttctttg ctggattggc atctgatgtc cttggctctg gacttggttc
     2461 tctaatcaat gctggggctg gggccatcaa ccaaaaagtt gaatttgaaa ataacagaaa
     2521 attgcaacaa gcttccttcc aatttagtag caatctgcaa caggcttcct tccaacatga
     2581 taaagagatg ctccaagcac aaattgaggc tacccaaaaa ttgcagcagg gtctgatgaa
     2641 ggttaaacag gcaatgctcc tagagggtgg attctctaca acagatgcag cccgtggggc
     2701 aatcaacgcc cctatgacaa aggctctgga ctggagcgga acaaggtact gggcccctga
     2761 tgccaggacc acaacataca atgcaggccg cttttccacc tctcagcctt cgggggcatt
     2821 gccaggaaga actactccta gggttaccgt ccccgctcgg ggtcactcca gcacgctttc
     2881 caatgcttct actgctactt ctgtatattc aaatcaaact gtttcaacga gactaggttc
     2941 ttcagctggt tctggcaccg gtgtctcgag tctcccgtca actgcaagga ctaggaactg
     3001 ggttgaggac caaaacagaa atttgtcacc tttcatgagg ggggctctca acacatcatt
     3061 tgtcacccca ccatctagca gatcctccaa ccaaggcaca gtctcaaccg tgcctaaaga
     3121 aattttggac tcctggactg gcgctttcaa cacgcgcagg cagcctctct tcgcccatat
     3181 tcgtaaacga ggggagtcac gggtgtaatg tgaaaagaca aaattgatta tctttctttt
     3241 tctttagtgt cttttt
//