Typing tool
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Complete norovirus genomes
LC048948 | GII.4 Yerseke | ||
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GII.P4 US95 |
ORF1: 1..802 ORF2: 783..2402 ORF3: 2402..3208LOCUS LC048948 3256 bp RNA linear VRL 27-DEC-2016 DEFINITION Norovirus Hu/GII/3-157/Tokyo/1994/JPN genes for non structural protein, structural protein (VP1), minor capsid protein (VP2), partial and complete cds. ACCESSION LC048948 VERSION LC048948.1 KEYWORDS . SOURCE Norovirus Hu/GII/3-157/Tokyo/1994/JPN ORGANISM Norovirus Hu/GII/3-157/Tokyo/1994/JPN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Mori,K. TITLE Genotypes of Norovirus detected in community gastroenteritis in Tokyo JOURNAL Unpublished REFERENCE 2 (bases 1 to 3256) AUTHORS Mori,K. TITLE Direct Submission JOURNAL Submitted (10-APR-2015) Contact:Kohji Mori Tokyo Metropolitan Institute of Public Health, Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan URL :http://www.tokyo-eiken.go.jp/ FEATURES Location/Qualifiers source 1..3256 /organism="Norovirus Hu/GII/3-157/Tokyo/1994/JPN" /mol_type="genomic RNA" /strain="Hu/GII/3-157/Tokyo/1994/JPN" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1646448" /country="Japan: Tokyo" /collection_date="1994" CDS <1..802 /note="polyprotein" /codon_start=2 /product="non structural protein" /protein_id="BAW33647.1" /translation="RWDSTQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVG DFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEATNLSPDIIQANPLFSSYGDDEI VSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFG KLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 783..2402 /gene="VP1" CDS 783..2402 /gene="VP1" /codon_start=1 /product="structural protein" /protein_id="BAW33648.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSHDSTLKLIAVLYTPLRTNNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICNFRGDVTHIVGSHETTMNLASQNWSNYDPTQKIPAPLGTPHFVGKIQGLL TQTTRAHGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDG DHHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC LLPHEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPFDLGI PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" gene 2402..3208 /gene="VP2" CDS 2402..3208 /gene="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="BAW33649.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQAMLLEGGFSTTDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTSQPSGALPGRTTPRVTVPARGHSSTLS NASTATSVYSNQTVSTRLGSSAGSGTGVSSLPSTARTRNWVEDQNRNLSPFMRGALNT SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 tcgatgggat tcaacacaac agagagccgt gttagcagca gccctagaaa tcatggttaa 61 attctcccca gaaccacatc tggctcagat agttgcagaa gaccttcttt ctcctagtgt 121 gatggatgtg ggtgacttca aaatatcaat caatgagggt ctcccctctg gggtgccctg 181 cacctcccag tggaactcca tcgcccactg gctcctcact ctctgcgcac tctctgaagc 241 tacaaatctg tcccctgaca tcatacaggc taatcccctc ttctcctctt atggtgatga 301 tgaaatcgtc agtacagata taaagctgga cccagagaaa ttgacagcaa aactcaagga 361 atacgggcta aaaccaaccc gccctgacaa aactgaagga ccccttatta tttctgaaga 421 cttgaatggc ctgaccttcc tgcggagaac tgtgacccgc gacccagctg gctggtttgg 481 aaaattggaa caaagttcaa tacttaggca aatgtactgg actaggggcc ccaaccatga 541 agacccatct gaaacaatga ttccacactc ccaaagaccc atacaattaa tgtccctact 601 gggagaggcc gcactccacg gtccagcatt ctacagcaaa attagcaagc tagtcattgc 661 agagctgaag gaaggtggca tggattttta cgtgcccaga caagagccaa tgttcagatg 721 gatgagattc tcagatctga gcacgtggga gggcgatcgc aatctggctc ccagttttgt 781 gaatgaagat ggcgtcgagt gacgccaacc catctgatgg gtccgcagcc aacctcgtcc 841 cagaggtcaa caatgaggtt atggctttgg agcccgttgt tggtgccgct attgcggcac 901 ctgtagcggg ccaacaaaat ataattgacc cctggattag aaataatttt gtacaagccc 961 ctggtggaga gtttacagtg tcccctagaa acgctccagg tgagatacta tggagcgcgc 1021 ccctgggccc tgatctgaat ccctatcttt ctcatttgtc cagaatgtat aatggttatg 1081 caggtggttt tgaagtgcaa gtgatccttg cggggaacgc gttcaccgcc gggaaggtta 1141 tatttgcagc ggttccacca aactttccaa ctgaaggctt aagccccagc caggttacta 1201 tgttccccca tataattgta gatgttaggc aactggaacc tgtgttgatt cccctacctg 1261 atgttaggaa taatttctat cattataatc aatcacatga ttctaccctt aagttgatag 1321 cagtgctgta cacaccactt aggactaata atgccgggga tgatgtcttt acagtctctt 1381 gtcgagttct cacgaggcca tcccccgatt ttgatttcat attcttggtg ccacccacag 1441 ttgaatcaag aactaaacca ttcactgtcc caatcttaac cgttgaggaa atgtccaatt 1501 caagattccc cattcctttg gaaaagttgt atacgggtcc cagcagtgct tttgttgtcc 1561 aaccacaaaa tggcagatgc acgactgacg gcgtgctctt aggcactacc cagctgtcag 1621 ctgtcaacat ctgcaatttt aggggggatg tcacccatat tgtgggcagc catgagacta 1681 caatgaactt ggcttcccaa aattggagca attatgaccc aacacaaaaa atcccagccc 1741 ccctgggaac accacatttt gtggggaaga tccaaggtct gctcacccaa accacaagag 1801 cacatggctc gacccgtgcc cacaaagcta cagtgagcac tgggagtgtc cacttcactc 1861 caaagctggg tagtgttcaa ttcaccactg acacaaacaa tgatttccaa actggccaaa 1921 acacgaaatt caccccagtt ggtgtcatcc aagacggtga ccaccaccag aatgagcccc 1981 aacaatgggt actcccgaat tattcaggta gaactggtca taatgtgcac ctggcccctg 2041 ctgttgcccc cacttttccg ggtgagcaac tccttttctt tagatccact atgcccgggt 2101 gtagcgggta tcccaacatg aacttggatt gcctactccc tcacgaatgg gtgctgcact 2161 tctaccagga agcagctcca gcgcaatctg atgtggctct gctgagattt gtgaatcccg 2221 acacaggtag ggttctgttt gagtgcaagc tccataaatc aggctatatc acagtggccc 2281 acaccggccc gtttgacttg ggtatccccc ctaatggtta ttttagattt gattcctggg 2341 tcaatcagtt ctacacactt gcccccatgg gaaatgggac ggggcgcagg cgtgcattat 2401 aatggctgga gctttctttg ctggattggc atctgatgtc cttggctctg gacttggttc 2461 tctaatcaat gctggggctg gggccatcaa ccaaaaagtt gaatttgaaa ataacagaaa 2521 attgcaacaa gcttccttcc aatttagtag caatctgcaa caggcttcct tccaacatga 2581 taaagagatg ctccaagcac aaattgaggc tacccaaaaa ttgcagcagg gtctgatgaa 2641 ggttaaacag gcaatgctcc tagagggtgg attctctaca acagatgcag cccgtggggc 2701 aatcaacgcc cctatgacaa aggctctgga ctggagcgga acaaggtact gggcccctga 2761 tgccaggacc acaacataca atgcaggccg cttttccacc tctcagcctt cgggggcatt 2821 gccaggaaga actactccta gggttaccgt ccccgctcgg ggtcactcca gcacgctttc 2881 caatgcttct actgctactt ctgtatattc aaatcaaact gtttcaacga gactaggttc 2941 ttcagctggt tctggcaccg gtgtctcgag tctcccgtca actgcaagga ctaggaactg 3001 ggttgaggac caaaacagaa atttgtcacc tttcatgagg ggggctctca acacatcatt 3061 tgtcacccca ccatctagca gatcctccaa ccaaggcaca gtctcaaccg tgcctaaaga 3121 aattttggac tcctggactg gcgctttcaa cacgcgcagg cagcctctct tcgcccatat 3181 tcgtaaacga ggggagtcac gggtgtaatg tgaaaagaca aaattgatta tctttctttt 3241 tctttagtgt cttttt //