Human calicivirus
Typing tool

Complete norovirus genomes

LC048908  GII.4 Sydney
 GII.P4 Hunter

Length: 3,254 | 3 CDS 

ORF1: 1..802
ORF2: 783..2402
ORF3: 2402..3208

LOCUS       LC048908                3254 bp    RNA     linear   VRL 27-DEC-2016
DEFINITION  Norovirus Hu/GII/3-64/Tokyo/1993/JPN genes for non structural
            protein, structural protein (VP1), minor capsid protein (VP2),
            partial and complete cds.
ACCESSION   LC048908
VERSION     LC048908.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII/3-64/Tokyo/1993/JPN
  ORGANISM  Norovirus Hu/GII/3-64/Tokyo/1993/JPN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE   1
  AUTHORS   Mori,K.
  TITLE     Genotypes of Norovirus detected in community gastroenteritis in
            Tokyo
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3254)
  AUTHORS   Mori,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2015) Contact:Kohji Mori Tokyo Metropolitan
            Institute of Public Health, Department of Microbiology; 3-24-1
            Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan URL
            :http://www.tokyo-eiken.go.jp/
FEATURES             Location/Qualifiers
     source          1..3254
                     /organism="Norovirus Hu/GII/3-64/Tokyo/1993/JPN"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII/3-64/Tokyo/1993/JPN"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:1646408"
                     /geo_loc_name="Japan: Tokyo"
                     /collection_date="1993"
     CDS             <1..802
                     /note="polyprotein"
                     /codon_start=2
                     /product="non structural protein"
                     /protein_id="BAW33566.1"
                     /translation="RWDSTQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVG
                     DFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEI
                     VSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFG
                     KLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV
                     IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            783..2402
                     /gene="VP1"
     CDS             783..2402
                     /gene="VP1"
                     /codon_start=1
                     /product="structural protein"
                     /protein_id="BAW33567.1"
                     /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG
                     FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSAVNICNFRGDVTHIVGSHDYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGLL
                     TQTTRAHGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDG
                     DHHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
                     LLPQEWVLHFYQETAPAQPDVALLRFVNPDTSRVLCECKLPKSGYITVAHTGPYDLVI
                     PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
     gene            2402..3208
                     /gene="VP2"
     CDS             2402..3208
                     /gene="VP2"
                     /codon_start=1
                     /product="minor capsid protein"
                     /protein_id="BAW33568.1"
                     /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQAMLLEGGFSTTDAARGAIN
                     APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNPRVTVPARGPPSTLS
                     NASTATSVYSNQTVSTRLGSSAGSGTGVSSLPSTARTRNWVEDQNRNLSPFMSGALNT
                     SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN      
        1 tcggtgggat tcaacacaac agagagccgt gttagcagca gccctagaaa tcatggtcaa
       61 attctcccca gaaccacatc tggctcagat agttgcagaa gaccttcttt ctcctagtgt
      121 gatggatgtg ggtgacttca aaatatcaat caatgagggt ctcccctctg gggtgccctg
      181 cacctcccag tggaattcca tcgcccattg gctcctcact ctctgtgcac tctctgaagt
      241 tacaaatttg tcccctgaca tcatacaggc taattccctc ttctcctttt atggcgatga
      301 tgaaattgtc agtacagata taaagttgga cccagagaaa ttgacagcaa aactcaagga
      361 atacgggctg aaaccaaccc gccctgacaa aactgaagga ccccttatca tttctgagga
      421 cttgaatggc ctgaccttcc tgcggagaac tgtgacccgc gacccagctg gttggtttgg
      481 aaaattggaa cagagttcaa tacttaggca aatgtactgg actaggggcc ccaaccatga
      541 agacccatct gaaacaatga ttccacactc ccaaagaccc atacaattga tgtccctact
      601 gggagaggcc gcactccacg gcccagcatt ctacagcaaa attagcaagc tagtcattgc
      661 agagctgaag gaaggtggca tggattttta cgtgcccaga caagagccaa tgttcaggtg
      721 gatgagattc tcagatctga gcacgtggga gggcgatcgc aatctggctc ccagctttgt
      781 gaatgaagat ggcgtcgagt gacgccaacc catctgatgg gtccgcagcc aacctcgtcc
      841 cagaggtcaa caatgaggtt atggctctgg agcccgttgt tggtgccgct attgcggcac
      901 ctgtagcggg ccaacaaaat ataattgacc cctggattag aaataatttt gtacaagccc
      961 ctggtggaga gttcacagtg tcccctagaa acgctccagg tgagatacta tggagcgcgc
     1021 ccttgggccc tgatttgaac ccctatcttt ctcatttgtc cagaatgtat aatggttatg
     1081 caggtggttt tgaagtgcaa gtgatcctcg cggggaacgc gttcaccgcc gggaaagtta
     1141 tatttgcagc agttccacca aactttccaa ctgaaggctt aagccccagc caggttacta
     1201 tgtttcccca tataattgta gatgttaggc aattggaacc tgtgttgatt cccctacctg
     1261 atgtcaggaa taatttctat cattacaatc aatcacatga ctctaccctt aagttgatag
     1321 caatgctgta cacaccactt agggctaata atgccgggga tgatgtcttt acagtctctt
     1381 gtcgagttct cacgaggcca tcccccgatt ttgatttcat attcttggtg ccacccacag
     1441 ttgaatcaag aactaaacca ttcaccgtcc caatcttaac cgttgaggaa atgtccaatt
     1501 caagattccc cattcctttg gaaaagttgt atacgggtcc cagcagtgct tttgttgtcc
     1561 aaccacaaaa tggcagatgc acgactgatg gcgtgctctt aggcaccacc cagctgtcag
     1621 ctgtcaacat ctgcaacttt aggggggatg tcacccatat tgtgggcagc catgattaca
     1681 caatgaattt ggcttcccaa aattggagca attatgaccc aacagaagaa atcccagccc
     1741 ccctgggaac accagatttt gtggggaaga tccaaggcct gctcacccaa accacaagag
     1801 cacatggctc gacccgtgcc cacaaagcta cagtgagcac tgggagtgtc cacttcactc
     1861 caaagctggg tagtgttcaa tttaccactg acacaaacaa tgatttccaa accggccaaa
     1921 acacgaaatt caccccagtt ggcgtcatcc aagacggtga ccaccaccag aatgagcccc
     1981 aacaatgggt acttccaaat tattcaggta gaactggtca taatgtgcac ctggcccctg
     2041 ccgtcgcccc cacttttccg ggtgagcaac tccttttctt tagatccact atgcccgggt
     2101 gtagcgggta tcccaacatg aacttggatt gcctactccc ccaggaatgg gtgctgcact
     2161 tctaccagga aacagctccc gcacaacccg atgtggctct gctgagattt gtgaatccag
     2221 acacaagtag ggttctgtgt gagtgtaagc tccctaaatc aggctatatc acagtggctc
     2281 acacgggccc gtatgacttg gttatccccc ctaatggcta ttttagattt gattcctggg
     2341 tcaaccagtt ctacacactt gcccccatgg gaaatgggac ggggcgcagg cgtgcattat
     2401 aatggctgga gctttctttg ctggattggc atctgatgtc cttggctctg gacttggttc
     2461 tctaatcaat gctggggctg gggccatcaa tcaaaaagtt gaatttgaaa acaacagaaa
     2521 attgcaacaa gcttccttcc aatttagtag caatctgcaa caggcttcct tccaacatga
     2581 taaagagatg ctccaagcac aaattgaggc cacccaaaaa ttgcaacagg gtctgatgaa
     2641 ggttaaacag gcaatgctcc tagagggtgg attctccaca acagatgcag cccgtggggc
     2701 aatcaacgcc cccatgacaa aggctctgga ctggagcgga acaaggtact gggcccctga
     2761 tgccaggacc acaacataca atgcaggccg cttttccacc cctcagcctt cgggggcatt
     2821 gccaggaaga actaatccta gggttactgt ccccgctcgg ggtcccccta gtacactttc
     2881 taatgcttct actgctactt ctgtatattc aaatcaaact gtttcaacga gactaggttc
     2941 ttcagctggt tctggcaccg gtgtctcgag tctcccgtca actgcaagga ctaggaactg
     3001 ggttgaggac caaaacagga atttgtcacc tttcatgagt ggggctctca atacatcatt
     3061 cgtcacccca ccatctagca gatcctctaa tcaaggcaca gtctcaaccg tgcctaaaga
     3121 aattttggac tcctggactg gcgctttcaa cacgcgcagg cagcctctct tcgctcacat
     3181 tcgtaaacga ggggagtcac gggtgtaatg tgaaaagaca aaactgatta tctttctttt
     3241 ctttagtgtc tttt
//