Typing tool
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Complete norovirus genomes
LC048908 | GII.4 Sydney | ||
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GII.P4 US95 |
ORF1: 1..802 ORF2: 783..2402 ORF3: 2402..3208LOCUS LC048908 3254 bp RNA linear VRL 27-DEC-2016 DEFINITION Norovirus Hu/GII/3-64/Tokyo/1993/JPN genes for non structural protein, structural protein (VP1), minor capsid protein (VP2), partial and complete cds. ACCESSION LC048908 VERSION LC048908.1 KEYWORDS . SOURCE Norovirus Hu/GII/3-64/Tokyo/1993/JPN ORGANISM Norovirus Hu/GII/3-64/Tokyo/1993/JPN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Mori,K. TITLE Genotypes of Norovirus detected in community gastroenteritis in Tokyo JOURNAL Unpublished REFERENCE 2 (bases 1 to 3254) AUTHORS Mori,K. TITLE Direct Submission JOURNAL Submitted (10-APR-2015) Contact:Kohji Mori Tokyo Metropolitan Institute of Public Health, Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan URL :http://www.tokyo-eiken.go.jp/ FEATURES Location/Qualifiers source 1..3254 /organism="Norovirus Hu/GII/3-64/Tokyo/1993/JPN" /mol_type="genomic RNA" /strain="Hu/GII/3-64/Tokyo/1993/JPN" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1646408" /country="Japan: Tokyo" /collection_date="1993" CDS <1..802 /note="polyprotein" /codon_start=2 /product="non structural protein" /protein_id="BAW33566.1" /translation="RWDSTQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVG DFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEI VSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFG KLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 783..2402 /gene="VP1" CDS 783..2402 /gene="VP1" /codon_start=1 /product="structural protein" /protein_id="BAW33567.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICNFRGDVTHIVGSHDYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGLL TQTTRAHGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDG DHHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC LLPQEWVLHFYQETAPAQPDVALLRFVNPDTSRVLCECKLPKSGYITVAHTGPYDLVI PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" gene 2402..3208 /gene="VP2" CDS 2402..3208 /gene="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="BAW33568.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQAMLLEGGFSTTDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNPRVTVPARGPPSTLS NASTATSVYSNQTVSTRLGSSAGSGTGVSSLPSTARTRNWVEDQNRNLSPFMSGALNT SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 tcggtgggat tcaacacaac agagagccgt gttagcagca gccctagaaa tcatggtcaa 61 attctcccca gaaccacatc tggctcagat agttgcagaa gaccttcttt ctcctagtgt 121 gatggatgtg ggtgacttca aaatatcaat caatgagggt ctcccctctg gggtgccctg 181 cacctcccag tggaattcca tcgcccattg gctcctcact ctctgtgcac tctctgaagt 241 tacaaatttg tcccctgaca tcatacaggc taattccctc ttctcctttt atggcgatga 301 tgaaattgtc agtacagata taaagttgga cccagagaaa ttgacagcaa aactcaagga 361 atacgggctg aaaccaaccc gccctgacaa aactgaagga ccccttatca tttctgagga 421 cttgaatggc ctgaccttcc tgcggagaac tgtgacccgc gacccagctg gttggtttgg 481 aaaattggaa cagagttcaa tacttaggca aatgtactgg actaggggcc ccaaccatga 541 agacccatct gaaacaatga ttccacactc ccaaagaccc atacaattga tgtccctact 601 gggagaggcc gcactccacg gcccagcatt ctacagcaaa attagcaagc tagtcattgc 661 agagctgaag gaaggtggca tggattttta cgtgcccaga caagagccaa tgttcaggtg 721 gatgagattc tcagatctga gcacgtggga gggcgatcgc aatctggctc ccagctttgt 781 gaatgaagat ggcgtcgagt gacgccaacc catctgatgg gtccgcagcc aacctcgtcc 841 cagaggtcaa caatgaggtt atggctctgg agcccgttgt tggtgccgct attgcggcac 901 ctgtagcggg ccaacaaaat ataattgacc cctggattag aaataatttt gtacaagccc 961 ctggtggaga gttcacagtg tcccctagaa acgctccagg tgagatacta tggagcgcgc 1021 ccttgggccc tgatttgaac ccctatcttt ctcatttgtc cagaatgtat aatggttatg 1081 caggtggttt tgaagtgcaa gtgatcctcg cggggaacgc gttcaccgcc gggaaagtta 1141 tatttgcagc agttccacca aactttccaa ctgaaggctt aagccccagc caggttacta 1201 tgtttcccca tataattgta gatgttaggc aattggaacc tgtgttgatt cccctacctg 1261 atgtcaggaa taatttctat cattacaatc aatcacatga ctctaccctt aagttgatag 1321 caatgctgta cacaccactt agggctaata atgccgggga tgatgtcttt acagtctctt 1381 gtcgagttct cacgaggcca tcccccgatt ttgatttcat attcttggtg ccacccacag 1441 ttgaatcaag aactaaacca ttcaccgtcc caatcttaac cgttgaggaa atgtccaatt 1501 caagattccc cattcctttg gaaaagttgt atacgggtcc cagcagtgct tttgttgtcc 1561 aaccacaaaa tggcagatgc acgactgatg gcgtgctctt aggcaccacc cagctgtcag 1621 ctgtcaacat ctgcaacttt aggggggatg tcacccatat tgtgggcagc catgattaca 1681 caatgaattt ggcttcccaa aattggagca attatgaccc aacagaagaa atcccagccc 1741 ccctgggaac accagatttt gtggggaaga tccaaggcct gctcacccaa accacaagag 1801 cacatggctc gacccgtgcc cacaaagcta cagtgagcac tgggagtgtc cacttcactc 1861 caaagctggg tagtgttcaa tttaccactg acacaaacaa tgatttccaa accggccaaa 1921 acacgaaatt caccccagtt ggcgtcatcc aagacggtga ccaccaccag aatgagcccc 1981 aacaatgggt acttccaaat tattcaggta gaactggtca taatgtgcac ctggcccctg 2041 ccgtcgcccc cacttttccg ggtgagcaac tccttttctt tagatccact atgcccgggt 2101 gtagcgggta tcccaacatg aacttggatt gcctactccc ccaggaatgg gtgctgcact 2161 tctaccagga aacagctccc gcacaacccg atgtggctct gctgagattt gtgaatccag 2221 acacaagtag ggttctgtgt gagtgtaagc tccctaaatc aggctatatc acagtggctc 2281 acacgggccc gtatgacttg gttatccccc ctaatggcta ttttagattt gattcctggg 2341 tcaaccagtt ctacacactt gcccccatgg gaaatgggac ggggcgcagg cgtgcattat 2401 aatggctgga gctttctttg ctggattggc atctgatgtc cttggctctg gacttggttc 2461 tctaatcaat gctggggctg gggccatcaa tcaaaaagtt gaatttgaaa acaacagaaa 2521 attgcaacaa gcttccttcc aatttagtag caatctgcaa caggcttcct tccaacatga 2581 taaagagatg ctccaagcac aaattgaggc cacccaaaaa ttgcaacagg gtctgatgaa 2641 ggttaaacag gcaatgctcc tagagggtgg attctccaca acagatgcag cccgtggggc 2701 aatcaacgcc cccatgacaa aggctctgga ctggagcgga acaaggtact gggcccctga 2761 tgccaggacc acaacataca atgcaggccg cttttccacc cctcagcctt cgggggcatt 2821 gccaggaaga actaatccta gggttactgt ccccgctcgg ggtcccccta gtacactttc 2881 taatgcttct actgctactt ctgtatattc aaatcaaact gtttcaacga gactaggttc 2941 ttcagctggt tctggcaccg gtgtctcgag tctcccgtca actgcaagga ctaggaactg 3001 ggttgaggac caaaacagga atttgtcacc tttcatgagt ggggctctca atacatcatt 3061 cgtcacccca ccatctagca gatcctctaa tcaaggcaca gtctcaaccg tgcctaaaga 3121 aattttggac tcctggactg gcgctttcaa cacgcgcagg cagcctctct tcgctcacat 3181 tcgtaaacga ggggagtcac gggtgtaatg tgaaaagaca aaactgatta tctttctttt 3241 ctttagtgtc tttt //