Typing tool
|
Complete norovirus genomes
LC035073 | GII.3 | ||
---|---|---|---|
GII.P12 |
ORF1: 1..803 ORF2: 784..2430 ORF3: 2430..3194LOCUS LC035073 3246 bp RNA linear VRL 27-DEC-2016 DEFINITION Norovirus Hu/GII/14-2523/Tokyo/2014/JPN RdRp, VP1, VP2 genes for non structural protein, structural protein, minor capsid protein, partial and complete cds. ACCESSION LC035073 VERSION LC035073.1 KEYWORDS . SOURCE Norovirus Hu/GII/14-2523/Tokyo/2014/JPN ORGANISM Norovirus Hu/GII/14-2523/Tokyo/2014/JPN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Mori,K. TITLE Comparison of detected GII.3 Norovirus JOURNAL Unpublished REFERENCE 2 (bases 1 to 3246) AUTHORS Mori,K. TITLE Direct Submission JOURNAL Submitted (16-MAR-2015) Contact:Kohji Mori Tokyo Metropolitan Institute of public Health, Microbiology; 3-24-1 Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan URL :http://www.tokyo-eiken.go.jp/ FEATURES Location/Qualifiers source 1..3246 /organism="Norovirus Hu/GII/14-2523/Tokyo/2014/JPN" /mol_type="genomic RNA" /strain="Hu/GII/14-2523/Tokyo/2014/JPN" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1646372" /country="Japan: Tokyo" /collection_date="2014" gene <1..803 /gene="RdRp" CDS <1..803 /gene="RdRp" /codon_start=3 /product="non structural protein" /protein_id="BAW33512.1" /translation="RWDSTQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVG DFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEI VSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFG KLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 784..2430 /gene="VP1" CDS 784..2430 /gene="VP1" /codon_start=1 /product="structural protein" /protein_id="BAW33513.1" /translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEISTESDDFDQNQP TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ" gene 2430..3194 /gene="VP2" CDS 2430..3194 /gene="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="BAW33514.1" /translation="MAGAFIAGLAGDILTNTVGSLINAGANAINQKVDFENNKYLQNA SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG TRYWAPSATSTTSMSGGFTNQAVPRTTPNFKMNQAPKSTPSSGSSVRSLSTQVTSLSS HSSGSSRTSGSTVASSLPSSNRTRDWVNQQNFNLEPHMLGSLRTAFVTPPSSTASSSG TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV" ORIGIN 1 cccggtggga ttcaacacaa caaagagccg tgttggcagc agccttagaa atcatggtca 61 agttttcccc agagccgcac ctggcccaaa aggttgcaga agaccttctt tctcccagcg 121 tgatggacgt gggtgatttc aaaatatcaa tcaatgaggg tctcccctcc ggagtgccct 181 gcacctccca atggaattcc atcgcccact ggctcctcac tctttgtgca ctctccgagg 241 ttacaaacct gtcccctgac attattcagg ccaactctct cttttctttc tacggtgatg 301 atgaaattgt gagtacagac ataaaattgg acccagaaaa actgacagca aaacttaagg 361 aatacgggtt gaaaccgacc cgccctgaca agactgaagg gcctcttgtc atttccgaag 421 acctgaatgg cctaaccttc ctgcggagga ccgtgactcg cgacccagca ggctggtttg 481 gaaagttgga acagagctca atactcagac aaatgtactg gactaggggc cccaaccatg 541 aagatccatc tgaaacaatg ataccacact cccagaggcc catacaattg atgtctttgc 601 tgggtgaggc agcactccac ggcccagcat tctacagcaa aatcagtaaa ctggtcattg 661 cagagttgaa ggaaggtggc atggattttt acgtgccaag acaagagcca atgttcagat 721 ggatgagatt ctcggatctg agcacgtggg agggcgatcg caatctggct cccagttttg 781 tgaatgaaga tggcgtcgaa tgacgccact ccatctaatg atggtgccgc cggcctcgtc 841 ccagagatca acaatgaggc aatggcgcta gatccagtgg cgggtgcagc gatagcagca 901 cccctcactg gccagcaaaa tataattgat ccctggatta tgaacaattt tgtgcaagca 961 cctggtggtg agttcacagt gtcgcctagg aattcccctg gtgaagtgct cctcaatttg 1021 gaattgggcc cagagataaa cccctatctg gcccatcttg ctagaatgta caatggttat 1081 gcaggtgggt ttgaagtgca ggtagtccta gctggaaatg cgtttacagc aggaaagata 1141 atctttgcag ctataccccc taacttccca attgacaatc taagtgcagc acagatcaca 1201 atgtgcccac atgtgattgt ggatgtcagg cagttggaac cggtcaacct cccgatgcct 1261 gacgttcgca ataacttctt ccactacaac caagggtctg attcgagatt gcgcttgatt 1321 gcaatgctgt acacacctct tagggcaaat aactctgggg atgacgtctt cactgtgtct 1381 tgtagagtgc tgactaggcc tagccctgaa ttttcattta atttccttgt gccacccact 1441 gtggagtcaa agacaaaacc cttcaccctc ccaattctga ctatctctga aatgtctaat 1501 tctaggtttc cagtgccgat tgattctctg cacaccagcc caactgagaa tattgtcgtc 1561 cagtgccaaa atggacgcgt cactcttgat ggtgagttga tgggcaccac tcagctctta 1621 cctagtcaaa tctgtgcttt caggggcgtg ctcactagat caacaagcag ggctagtgac 1681 caggccgaca cagcaacccc tagattgttt aattattatt ggcacataca attggataat 1741 ctaaatggga ctccttatga tcctgcagaa gacataccag gccccctggg gacaccagat 1801 ttccggggca aagtctttgg cgtggccagc caaagaaacc ccgacagtac aactagagca 1861 catgaagcaa aggtggacac aacatctggt cgcttcaccc caaaactagg ctcattagag 1921 atatccactg aatctgatga ctttgaccaa aaccaaccaa caagattcac cccagttggc 1981 attggagttg atcacgaggc agacttccaa caatggtcct tacccgacta ctctggccag 2041 ttcactcaca acatgaactt agccccagct gttgctccca acttccctgg tgagcagctc 2101 cttttcttcc gctcacagtt accatcttct ggtgggcgat ccaatgggat tctagactgc 2161 ctggtccccc aagaatgggt tcaacacttc taccaagaat cagcccccgc ccaaacccag 2221 gtggctctgg ttagatatgt caaccctgac actggtagag tgttgtttga ggccaagctg 2281 cataaattag gtttcatgac tatagctaag aatggtgact ctccaataac tgtcccccca 2341 aatggatact ttaggtttga atcttgggtg aacccatttt atacacttgc ccccatggga 2401 actgggaatg ggcgtagaag ggttcaataa tggctggagc ttttatagca ggattagctg 2461 gtgatatact cacaaacact gtagggtctt taattaatgc aggggctaat gctattaatc 2521 aaaaagttga ttttgaaaat aataaatatt tgcaaaatgc ttctttcaat catgataagg 2581 aaatgttaaa tgcacagatt gaggcaacaa agaggttaca ggctgacatg attgctatca 2641 aacagggggt tttgaccgct ggcggctttt cccccactga tgcagctcgc ggggcaatta 2701 atgcccccat gacaaaagtc ctagattgga atggaacaag gtactgggca ccaagtgcca 2761 cctctacaac ctcgatgtcg ggtggcttca caaaccaggc tgtgcccaga accacgccaa 2821 attttaaaat gaaccaggcc cctaagtcca cacccagcag tgggtcttca gtgaggtcac 2881 tctcaaccca agtcactagt ctgagctcac actcgtccgg gtcgtctcga accagcgggt 2941 ctacagttgc tagctcatta ccatcctcta acaggactag ggactgggtc aatcagcaaa 3001 atttcaattt ggaaccacac atgcttgggt cacttaggac ggcttttgtc actccaccat 3061 ctagtacagc ctctagttca ggcactgtct caaccgtgcc caaaaatgtt ttggactcct 3121 ggacatctgc gtttaacacg cgcagacagc cgctattcgc acaccttcgt agaagggggg 3181 agtcaaatgt ttagtgaaaa ggttacttta aatttgattt aaattggatt tgatttgaaa 3241 tctttt //