Human calicivirus
Typing tool

Complete norovirus genomes

LC035072  GII.3
 GII.P12

Length: 3,246 | 3 CDS 

ORF1: 1..803
ORF2: 784..2430
ORF3: 2430..3194

LOCUS       LC035072                3246 bp    RNA     linear   VRL 27-DEC-2016
DEFINITION  Norovirus Hu/GII/14-2397/Tokyo/2014/JPN RdRp, VP1, VP2 genes for
            non structural protein, structural protein, minor capsid protein,
            partial and complete cds.
ACCESSION   LC035072
VERSION     LC035072.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII/14-2397/Tokyo/2014/JPN
  ORGANISM  Norovirus Hu/GII/14-2397/Tokyo/2014/JPN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1
  AUTHORS   Mori,K.
  TITLE     Comparison of detected GII.3 Norovirus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3246)
  AUTHORS   Mori,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2015) Contact:Kohji Mori Tokyo Metropolitan
            Institute of public Health, Microbiology; 3-24-1 Hyakunin-cho,
            Shinjuku, Tokyo 169-0073, Japan URL :http://www.tokyo-eiken.go.jp/
FEATURES             Location/Qualifiers
     source          1..3246
                     /organism="Norovirus Hu/GII/14-2397/Tokyo/2014/JPN"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII/14-2397/Tokyo/2014/JPN"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:1646371"
                     /country="Japan: Tokyo"
                     /collection_date="2014"
     gene            <1..803
                     /gene="RdRp"
     CDS             <1..803
                     /gene="RdRp"
                     /codon_start=3
                     /product="non structural protein"
                     /protein_id="BAW33509.1"
                     /translation="RWDSTQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVG
                     DFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEI
                     VSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFG
                     KLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV
                     IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            784..2430
                     /gene="VP1"
     CDS             784..2430
                     /gene="VP1"
                     /codon_start=1
                     /product="structural protein"
                     /protein_id="BAW33510.1"
                     /translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
                     QNVIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
                     FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
                     VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
                     TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
                     QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNPNGTPYDPAEDIPGP
                     LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEISTESDDFDQNQP
                     TRFTPVGIGVDREADFQQWSLPDYSGQFTHNMNLAPAVAANSPGEQLIFFWSQSPYCG
                     GRSNRVLDCMVPQEWVQHFYQESAPAQTQLALVRYVNPDTGRVLFEAKLHKLGFMTIA
                     KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
     gene            2430..3194
                     /gene="VP2"
     CDS             2430..3194
                     /gene="VP2"
                     /codon_start=1
                     /product="minor capsid protein"
                     /protein_id="BAW33511.1"
                     /translation="MAGAFIAGLAGDILTNTVGSLVNTGASAINQKVDFENNKYLQNA
                     SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWSG
                     TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQSPKSTPSSGSSVRSLSTQVTSLSS
                     HSSGSSRSSGSTVASSLPSSNRTRDWVNQLNFYLEPHMPGSLRTAFVTPPSSTASSSG
                     TVSTVPKKFWTPGQSAFNTRRQPLFAHLRRRGESNV"
ORIGIN      
        1 cccggtggga ttcaacacaa caaagagccg tgttggcagc agccttagaa atcatggtca
       61 agttttcccc agagccgcac ctggcccaaa aggttgcaga agaccttctt tctcccagcg
      121 tgatggacgt gggtgatttc aaaatatcaa tcaatgaggg tctcccctcc ggagtgccct
      181 gcacctccca atggaattcc atcgcccact ggctcctcac tctctgtgca ctctccgagg
      241 ttacaaacct gtcccctgac attattcagg ccaactctct cttttctttc tacggtgatg
      301 atgaaattgt gagtacagac ataaaattgg acccagaaaa actgacagca aaacttaagg
      361 aatacgggtt gaaaccgacc cgccctgaca agactgaagg gcctcttgtc atttccgaag
      421 acctgaatgg cctaaccttc ctgcggagga ccgtgactcg cgacccagca ggctggtttg
      481 ggaagttgga acagagctca atactcagac aaatgtactg gactaggggc cccaaccatg
      541 aagatccatc tgaaacaatg ataccacact cccagaggcc catacaattg atgtctttgc
      601 tgggtgaggc agcactccac ggcccagcat tctacagcaa aatcagtaaa ctggtcattg
      661 cagagttgaa ggaaggtggc atggattttt acgtgccaag acaagagcca atgttcagat
      721 ggatgagatt ctcggatctg agcacgtggg agggcgatcg caatctggct cccagttttg
      781 tgaatgaaga tggcgtcgaa tgacgccact ccatctaatg atggtgccgc cggcctcgtc
      841 ccagagatca acaatgaggc aatggcgcta gatccagtgg cgggtgcagc gatagcagca
      901 cccctcactg gccagcaaaa tgtaattgat ccctggatta tgaacaattt tgtgcaagca
      961 cctggtggtg agtttacagt gtcgcctagg aattcccctg gtgaagtgct cctcaatttg
     1021 gaattgggcc cagagataaa cccctatctg gcccatcttg ctagaatgta caatggttat
     1081 gcaggtgggt ttgaagtgca ggtagtccta gctggaaatg cgtttacagc aggaaagata
     1141 atctttgcag ctataccccc taacttccca attgacaatc taagtgcagc acagatcaca
     1201 atgtgcccac atgtgattgt ggatgtcagg cagttggagc cggtcaacct cccgatgcct
     1261 gacgttcgca ataacttctt ccactacaac caagggtctg attcgagatt gcgcttgatt
     1321 gcaatgctgt acacacctct tagggcaaat aactctgggg atgacgtctt cactgtgtct
     1381 tgtagagtgc taactaggcc tagccctgaa ttttcattta acttccttgt gccacccact
     1441 gtggagtcaa agacaaaacc cttcaccctc ccaattctga ctatctctga aatgtctaat
     1501 tctaggtttc cagtgccgat tgattctctg cacaccagcc caactgagaa tattgtcgtc
     1561 cagtgccaaa atggacgcgt cactcttgat ggtgagttga tgggcaccac tcagctctta
     1621 cctagtcaaa tctgtgcttt caggggtgtg ctcactagat caacaagcag ggctagtgac
     1681 caggccgaca cagcaacccc tagattgttt aattattatt ggcacataca attggataat
     1741 ccaaatggga ctccttatga ccctgcagaa gacataccag gccccctggg gacaccagat
     1801 ttccggggca aagtctttgg cgtggccagc caaagaaacc ccgacagtac aactagagca
     1861 catgaagcaa aggtggacac aacatctggt cgcttcacgc caaaactagg ctcattagag
     1921 atatccactg aatctgatga ctttgaccaa aaccaaccaa caagattcac cccagttggc
     1981 attggagttg atcgcgaggc agacttccaa caatggtcct tacccgacta ctctggccag
     2041 ttcactcaca acatgaactt agccccagct gttgctgcca actcccctgg tgagcagctc
     2101 attttcttct ggtcacagtc accatactgt ggtgggcgat ccaatagggt tctagactgc
     2161 atggtccccc aagaatgggt tcagcacttt taccaagaat cagcccccgc ccaaacccag
     2221 ctggctctgg ttagatatgt taaccctgac actggtagag tgttgtttga ggccaagctg
     2281 cataaattag gtttcatgac tatagctaag aatggtgact ctccaataac tgtcccccca
     2341 aatggatact ttaggtttga atcttgggtg aacccatttt acacacttgc ccccatggga
     2401 actgggaatg ggcgtagaag ggttcaataa tggctggagc ttttatagca ggattagctg
     2461 gtgatatact cacaaacact gtagggtctc tagttaatac aggggctagt gctattaatc
     2521 aaaaagttga ttttgaaaat aataaatatt tgcaaaatgc ttctttcaat catgataagg
     2581 aaatgttaaa tgcacagatt gaggcaacaa agaggttaca ggctgacatg attgctatca
     2641 aacagggggt tttgaccgct ggcggctttt cccccactga tgcagctcgc ggggcaatta
     2701 acgcccccat gacaaaagtc ctagattgga gtggaacaag gtactgggca ccaagtgcca
     2761 cctctacaac ctcgatgtcg ggtggcttca caaaccaggc tgtgcacaga accacgccaa
     2821 attttaaaat gaaccagtcc cctaaatcca cacccagcag tgggtcttca gtgaggtcac
     2881 tctcaaccca agtcactagt ctgagctcac actcgtccgg gtcgtctcga tccagcgggt
     2941 ctacagttgc tagctcatta ccatcctcta acaggactag ggactgggtc aatcagctaa
     3001 atttttattt ggaaccacac atgcctgggt cacttaggac ggcttttgtc actccccctt
     3061 ctagtacagc ctctagttca ggcactgtgt caaccgtgcc caaaaagttt tggactcctg
     3121 gacaatctgc gtttaacacg cgcagacagc cgctattcgc acaccttcgt agaagggggg
     3181 agtcaaatgt ttagtgaaaa ggttatctta aatttgattt aaattggatt tgatttgaaa
     3241 tctttt
//