Typing tool
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Typing tool
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Complete norovirus genomes
| L23828 | GI.1 | |
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| GI.P1 |
ORF1: 1..869
ORF2: 853..2445
ORF3: 2445..2516
LOCUS NOR89JB 2516 bp mRNA linear VRL 09-JAN-1995
DEFINITION Norwalk virus (SRSV-KY-89/89/J) RNA polymerase mRNA, 3'end and
capsid protein mRNA, complete cds.
ACCESSION L23828
VERSION L23828.1
KEYWORDS RNA polymerase; capsid protein.
SOURCE Norwalk virus
ORGANISM Norwalk virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1 (bases 1 to 2516)
AUTHORS Wang,J., Jiang,X., Madore,H.P., Gray,J., Desselberger,U., Ando,T.,
Seto,Y., Oishi,I., Lew,J.F., Green,K.Y. and et,A.
TITLE Sequence diversity of small, round-structured viruses in the
Norwalk virus group
JOURNAL J. Virol. 68 (9), 5982-5990 (1994)
PUBMED 8057474
COMMENT Original source text: Norwalk virus (individual_isolate
SRSV-KY-89/89/J) cDNA to mRNA.
FEATURES Location/Qualifiers
source 1..2516
/organism="Norwalk virus"
/mol_type="mRNA"
/isolate="SRSV-KY-89/89/J"
/db_xref="taxon:11983"
CDS <1..869
/note="label: ORF"
/codon_start=3
/product="RNA polymerase"
/protein_id="AAA59228.1"
/translation="IEDGPLIYAEHAKYKNHFDADYTAWDSTQNRQIMTESFSIMSRL
TASPELAEVVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWIITLCALSE
ATGLSPDVVQSMSYFSFYGDDEIVSTDIDFDPTRLTQILKEYGLKPTRPDKTEGPIQV
RKNVDGLVFLRRTISRDAAGFQGRLDRASIERQIFWTRGPNHSDPSETLVPHTQRKVQ
LISLLGEASLHGEKFYRKISSKVIHEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDR
NLLPEFVNDDGV"
CDS 853..2445
/codon_start=1
/product="capsid protein"
/protein_id="AAA59229.1"
/translation="MMMASKDATSSVDGASASVQLVPEVNASDPLAMDPVAGSSTAVA
TAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLHLSQMYNG
WVGNMRVRIMLAGNAFTAGKIIVSCIPPGFGSQQLTIAQATLFPHVIADVRTLDPIEV
PLEDVRNVLFHNNDRNQQTMRLVCMLYTPLSTGGGTGDSFVVAGRVMTCPSPDFNFLF
LVPPTVEQKTRPFTLPNLPLSSLSNSRAPLPISGMGISPDNVQSVQFQNGRCTLDGRL
VGTTPVSLSHVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHINMTQ
FGHSSQTQYDVDTTPDTSVPHLGSIQANGIGSGNYIGVLSWVSPPSHPSGSQVDLWKI
PNYGSSITEATHLAPSVYSPGFGEVLVFFMSKIPGPGGDSLPCLLPQGYISHLASEQA
PTVGEGPLLHYVDPDTDRNLGEFKAYPDGFLTCVPNGASSGPQQLPINGVFVFVSWVS
RFYQLKPVGTASTARGRLGLRR"
CDS 2445..>2516
/note="putative ORF3"
/codon_start=1
/protein_id="AAA59230.1"
/translation="MAQAIIGAIAASTAGSALGAGIQV"
ORIGIN
1 caatagagga tggcccttta atttatgctg aacatgccaa gtacaaaaat cattttgatg
61 cagattacac agcatgggac tctacacaaa atagacaaat tatgacagaa tccttctcca
121 tcatgtcacg ccttacggcc tctccagaac tagctgaggt tgtagcccag gacttactag
181 caccatccga gatggatgtg ggcgactatg ttataagggt caaagaaggc ctaccatcag
241 gatttccctg cacttctcaa gtgaatagca taaatcactg gataatcacc ctttgtgcat
301 tgtctgaggc tactggctta tcacctgatg tggtacagtc catgtcatac ttctcattct
361 acggtgatga tgagatcgta tcaactgaca tagactttga cccaactcgc ctcacccaaa
421 ttctcaagga atacggcctc aagccaacaa ggccagacaa aacagaagga ccaatacagg
481 tgaggaagaa tgtggatggg ctagtttttc tgcggcgcac catctcccgg gacgcagcag
541 ggttccaagg tagactggat agagcctcaa ttgaacgtca aattttctgg acccgcgggc
601 ccaaccattc agacccatca gagactctgg taccacacac ccaaaggaaa gtccagctga
661 tctcacttct aggagaagcc tcactccacg gggaaaaatt ttacaggaaa atatctagca
721 aagtcataca tgaaattaag actggtgggc tggagatgta tgtcccaggg tggcaggcca
781 tgttccgctg gatgcgcttc catgacctcg gattgtggac aggagatcgc aatctcctgc
841 ccgaattcgt aaatgatgat ggcgtctaag gacgctacgt caagcgtgga tggcgccagt
901 gcgtcggttc agttggtacc ggaggttaat gcttctgacc ctcttgcaat ggatcctgtg
961 gcgggttctt caacagcagt tgcaaccgct ggacaagtta accctattga cccttggata
1021 atcaataact ttgtgcaggc tccccaaggt gaatttacta tttctccaaa taataccccc
1081 ggtgatgttt tgtttgattt gagtctaggc cctcatctta atcccttctt gttacatttg
1141 tcacaaatgt ataatggctg ggttggcaac atgagagtta ggattatgct ggctggtaat
1201 gcatttactg caggcaaaat tatagtttct tgcatacctc ctggctttgg ctcccaacaa
1261 cttactatag cacaagcaac tctcttcccg catgtgattg ctgatgttag gactttagac
1321 ccaattgaag tacccttgga agatgtaagg aatgttctct ttcataataa tgatagaaat
1381 caacaaacta tgcgccttgt gtgcatgctt tatacccccc tcagcactgg tggcggtaca
1441 ggtgattctt ttgtggttgc agggcgagtc atgacttgtc ctagccccga ctttaatttc
1501 ttgttcttgg ttcctcccac agtggaacag aagactaggc ctttcaccct cccaaattta
1561 ccgctgagtt ctttgtctaa ttcacgtgct cctcttccaa ttagtggcat gggtatttct
1621 ccagataatg ttcagagtgt gcagttccaa aatggccgat gtaccttaga tggacgtctt
1681 gttggcacca ccccagtttc cctctcccat gttgctaaga taaggggtac ttctaatggt
1741 acagtaatca atctcaccga attggatggc acccccttcc acccttttga aggccctgcc
1801 cctattggtt ttccagatct tggtggctgt gattggcata ttaatatgac acaatttgga
1861 cattccagtc agactcagta tgatgtagac accacccccg acacctccgt ccctcactta
1921 ggttcaatcc aggcgaatgg cattggtagt ggcaactata ttggtgttct tagctgggtc
1981 tcccccccat cacatccatc tggctctcaa gttgatctct ggaagatccc caactatggg
2041 tctagtatca cagaggcaac ccatctagct ccctctgtct attctcctgg ctttggagag
2101 gtgctagtct ttttcatgtc aaagatacca ggtcctggtg gtgatagtct gccctgttta
2161 ctgccacaag gatatatctc acaccttgca agtgaacaag ccccaactgt tggtgagggt
2221 cccctgctcc actatgttga ccctgacacg gaccggaatc ttggggagtt taaggcttac
2281 cctgatggtt tcctaacctg tgtccctaat ggggccagct cgggcccaca acaactacca
2341 atcaatggag tctttgtctt tgtttcatgg gtgtccagat tttatcagtt aaagcctgtg
2401 ggaactgcca gtacggcaag aggtaggctt ggtttgcgcc gataatggct caggctataa
2461 ttggtgcaat tgccgcctct acagcaggta gtgctttagg ggcaggtata caggtt
//