Typing tool
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Typing tool
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Complete norovirus genomes
| KY934262 | GI.3 | |
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| GI.P3 |
ORF1: 5..5404
ORF2: 5388..7025
ORF3: 7025..7672
LOCUS KY934262 7778 bp RNA linear VRL 23-APR-2017
DEFINITION Norovirus GI isolate 0304-19, complete genome.
ACCESSION KY934262
VERSION KY934262.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7778)
AUTHORS Zheng,L., Chen,X. and Huo,Y.
TITLE Expression and characterization of major capsid protein derived
from a GI.3 norovirus strain isolated in China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7778)
AUTHORS Zheng,L., Chen,X. and Huo,Y.
TITLE Direct Submission
JOURNAL Submitted (12-APR-2017) Center for Translational Medicine, The
Sixth People's Hospital of Zhengzhou, Jingguangnan Road No. 29,
Zhengzhou, Henan 450000, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7778
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="0304-19"
/isolation_source="feces"
/db_xref="taxon:122928"
/country="China"
/collection_date="04-Mar-2015"
/note="genotype: GI.3"
CDS 5..5404
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ARI71146.1"
/translation="MMMASNDAIAVADVSNNNANTNNDNIGSRLMARIRGRIGPQRGE
TTTKIKDANMALDLLRRSQTPSPSRQESPPKSQRDRPPRTASEVKKVLGWDVEPEHQE
STAKAWCDLTQEEKEEIMRNNEKLFDAGGITPSTLPSTFERADPVDSPIEQQPVTWSA
SGGVDIGVNDLTTVRGPFWNMCPLPPLDARNNGPAKEPLIGDMIEFYEGHIFHYAIYI
GQGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYVPTNQQRLTYDQLKELENEPWPYAS
ITNNCYEFCCRVMALDDTWLERRLVSTGKFNHPTQDWSQDTPDFHQDSKLEMVRDAVL
SAINGLVSQPFKNILSKIKPLNVLNLLSNCDWTFMGVVELIVLLAELFDVFWTPPDIS
SFIASLLPEFHLQGPEDLARDLVPLILGGIGLAIGFTRDKVTKVMKSAVDGLRSATQL
GQYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLARTYMN
VLDNEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAEMTSRPRPVVIMMC
GPPGIGKTKAAEHLAGRLANEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSKI
TEDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCRR
VDFLVYCSAPEIEQMRRTHPGDANAIKDLYKRDYSHLKMELAPQGGFDSQGNTPFGKG
IMKPTTLNRLLIQATALAMERQDEFQLQGAVYNFDEDRVSAFTSLARANGLGLLSMAT
LGKRLRSVKSMEGLRNALVGYKIGECDIIWNTRVYSIKSDGSTVTIKEKQTPTSPQYQ
AISTATLALSRLRAARALAYASCLQSAVLSILQVAGSALVVSRAVKRMFGTRTEQPML
EGKHKEHNCRVHRAEAAGHGPIGHDGVIERYGLCESEQEEEGEQTVELPTANKEGKNK
GKTKKGRGRKSNFNAFSRRGVSDEEYEEYKKIREEKSGNYSIQEYLEDRQRYEEELAE
VQAGGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVSGSEIRKRKPIDWTPP
KNDWSEDTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGVKE
VFGEDLSNVAIHRVGEFTQFRFSKKMRPDLTGMVLEEGCPEGTVCTIMIKRDSGELLP
LAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVC
GVHAAATKSGNTVVCAIQGGDGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWK
STPQPLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVE
TVTNAIEQVMDTPVAWSYSDACMSLDKTTSSGHPHHKKKNDDWNGSSFVRELGDQAAH
ANSMYELGKSMKPVYTAALKDELVKPDKVYTKIKKRLLWGADLGTVIRAARAFGPFCE
AIKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKFHYDADYTAWDSTQNREIMMESFNIM
CKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWILTLCA
LSEVTGLSPDVIQSQSYFSFYGDDEIVSTDIEFDPIRLTQILKEYGLKPTRPDKTDGP
IIVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHEDPFETLVPHSQR
KVQLISLLGEAALHGEKFYRKIAGRVIQEVKEGGLEIYIPGWQAMFRWMRLHDLSLWT
GDRDLLPDYVNDDGV"
CDS 5388..7025
/codon_start=1
/product="capsid protein"
/protein_id="ARI71147.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFAAQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPNLPLNTLSNSRVPSLIKSMMVSRDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKIRGSVFHANGGNGYNLTELDGSPYHAFESPAPIGFPDLGECDWH
MEASPTTQFNTGDVIKQINVKQESAFAPHLGTIQADGLSDVSVNTNMIAKLGWVSPVS
DGHKRDVDPWVIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIAHGTNGLSVPC
TIPQEFVTHFVNEQAPTRGEAALLHYLDPDTHRNLGEFKLYPDGFMTCVPNSSGTGPQ
TLPINGVFVFVSWVSRFYQLKPVGTAGPARRLGIRRS"
CDS 7025..7672
/codon_start=1
/product="minor capsid protein"
/protein_id="ARI71148.1"
/translation="MAQAILGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQKN
SFIHDKEMMGLQVEASTALLQNSLGTRYNMLTKAGMTSADAARMVVGAPATRVIDWNG
TRIAAPMSTATTLRSGGFMTVPTVYRGGKNKQSIGGGFSNVNYDPSVSSSRTSQWVSS
QNSMRSTLEPFHPGALRTTWVTPPGSTSTSTISTVSTVPKFFNTERLPLFANRGK"
ORIGIN
1 gtgaatgatg atggcgtcta acgacgctat tgccgttgct gatgtcagca ataacaatgc
61 taacaccaac aatgataaca tcggatcccg cctcatggcg aggatccgtg ggcgtatagg
121 cccacaacgt ggtgaaacaa ccacaaaaat aaaagacgcc aatatggcgc ttgatctgct
181 acgccggtca caaacacctt ccccatcccg acaagagagc cctcctaaga gccagagaga
241 ccgccccccc cggactgctt ctgaagtgaa gaaagtgttg gggtgggatg ttgaaccaga
301 acaccaggaa agcacggcca aggcatggtg cgacctcacg caagaagaga aggaggagat
361 aatgcgcaac aatgaaaagc tcttcgatgc tgggggaatc accccatcaa ctttgcctag
421 cacgtttgaa agggctgacc cagttgatag ccccattgaa cagcaacctg taacatggtc
481 tgctagcggt ggggtcgata ttggtgtcaa tgatttaacc accgtccgtg gtccattttg
541 gaatatgtgc cccctcccgc cactggatgc tcggaataat ggccccgcta aggagcccct
601 cataggagat atgatagagt tctatgaggg tcatattttt cattatgcca tctatattgg
661 acaaggtaag accattgggg tccactcacc gcaagcagct ttctccatac caaggataac
721 catccatcct ctagtggcct ggtggcgcgt gtgctacgtt ccaactaatc agcagcgcct
781 cacttatgac cagctcaaag agttggagaa tgagccatgg ccctacgctt ccattacaaa
841 caattgctat gaattttgct gcagagtgat ggcacttgac gacacatggc ttgagaggag
901 gttagtcagc actgggaaat tcaaccaccc cacacaagat tggtcacagg ataccccgga
961 ttttcaccaa gactcgaaac ttgagatggt aagagatgcc gtgctatcag ccattaatgg
1021 ccttgtgtca caacccttta aaaacatttt gtcaaagatc aaaccattaa atgttctcaa
1081 cctcttgtca aattgtgatt ggaccttcat gggggttgtg gaactgattg tgctcctagc
1141 ggagttgttt gatgtgttct ggaccccacc agatatctca agtttcattg cctcactact
1201 acctgaattt cacctgcagg gccctgaaga cctagctagg gacttggtcc ctctcatcct
1261 aggtggcata ggcttggcta ttggctttac aagagacaaa gtgacgaaag tgatgaagag
1321 cgccgtcgat gggctgagat cggcgacaca actcgggcag tacgggctgg aaatattctc
1381 aatcatcaag aaatatttct ttggtgggga ccaaacggaa aagaccttgc ggggtattga
1441 ggatgcggtg atagatatgg aggtattgtc tagcaccaat gtgacacaat tggttaaaga
1501 taagaaattg gccagaacct atatgaatgt gctagacaat gaagaggaaa aagcaaggaa
1561 actctcagtc cgtagtgctg atccgcacat agtgacctca gtcaacaatc tgatatcacg
1621 gatatctatg gcaagatcag ccttggccaa agcccaggct gagatgacat ctcgcccacg
1681 ccctgtagtc ataatgatgt gtggcccccc cggcatcgga aaaaccaagg ccgccgaaca
1741 cctggctggc cgattggcaa acgagattag accgggaggt aaggttggac ttgtgccccg
1801 ggaatccata gatcactggg acggatacca tggcgaggat gtcctactat gggatgacta
1861 tggcatgtca aagataacag aggactgtaa taagctacaa gccatagctg acactgcacc
1921 cctatcactc aattgtgaca ggatagagaa caaaggcatg caattctcct cagatgcaat
1981 aatcataacc accaatgccc ctggcccggc cccggtggac tttgtcaacc tgggccctgt
2041 gtgcaggcga gtggactttt tagtttactg ctctgctcct gaaattgagc aaatgagaag
2101 gacccatcct ggtgatgcca atgccatcaa agacctatat aaaagggact actcacactt
2161 aaaaatggaa ttggccccac aaggtggttt tgatagtcag ggtaacacac catttgggaa
2221 gggtatcatg aagcccacga ccctcaatag gctactcatt caggcaacag cattagctat
2281 ggagcggcaa gatgagttcc agcttcaagg ggctgtctac aactttgatg aagacagggt
2341 gtccgccttc acaagcctgg cccgagctaa cggcttgggg cttttaagca tggcaacatt
2401 gggtaaaagg ctcagaagtg tcaaatctat ggagggcctg cgtaacgctt tggtgggcta
2461 caaaatagga gagtgtgata taatctggaa cactagagtg tattcaatta aaagtgatgg
2521 tagtactgtc acaatcaagg aaaaacaaac tccaacttca cctcaatacc aggccattag
2581 cacagctact cttgcactct ctaggttgcg ggccgctaga gccctcgcgt acgcctcctg
2641 cctgcagagt gcagtgctgt caatacttca agtagctggc tctgccctag tggtgagcag
2701 agccgttaaa cgcatgtttg gcacgcgcac tgaacaacct atgttggaag gcaagcacaa
2761 agaacacaac tgcagagtgc accgcgcaga ggcagctggc catggtccta ttgggcacga
2821 tggagtcatc gaacgctatg gcctttgtga gagtgagcaa gaagaagaag gtgagcaaac
2881 agttgagcta cccactgcca ataaagaagg caaaaacaag ggcaagacca aaaagggccg
2941 tggacgaaag tccaatttta atgctttctc aagacgaggc gtcagtgatg aagagtatga
3001 agaatacaag aagatcagag aagaaaagag tggcaattac agcatccagg agtacctcga
3061 ggaccggcaa cgatatgagg aagaacttgc tgaagtgcag gctggtgggg atggtggaat
3121 tggtgagact gaggcagaga ttcgccatcg ggttttctat aaatcaaaat ccggtatgag
3181 aaagcaacgc caagaagaac ggcgtcagtt gggcctcgtc agcggctctg agatccgcaa
3241 acgcaagccc atagactgga ccccccctaa gaatgattgg tcagaggaca ccaggactgt
3301 caactatgat gaacacatca gctttgaagc ccctccctca atttggagta gggtggtgaa
3361 gtttggcagt ggttggggtt tttgggtaag ctcaacagtg ttcataacca caacccatgt
3421 cataccacct ggggttaaag aagtctttgg tgaagacctc agtaatgtgg ccatccatag
3481 agttggtgag ttcacccagt tccgcttctc caaaaagatg agacctgacc tcaccggtat
3541 ggtcttagaa gaaggttgcc cagagggaac agtgtgcacc ataatgatca agagagactc
3601 tggtgagttg ctgccgctcg ccgttcggat gggggcagtg gcttcaatga agatccaagg
3661 taaacttatg catgggcaat caggaatgtt actcaccggt gctaatgcca aaggcatgga
3721 ccttgggact atacccggtg attgtggggc accctatgtc cacaagaggg gaaatgattg
3781 ggtggtctgt ggagtacatg cagccgccac aaaatcaggc aatactgtgg tgtgcgccat
3841 acagggtggc gatggtgaag ccactctaga aggcggcggt cagaacaagg gccactatgc
3901 agggcatccg atattaaggt atgggaatgg cccttcgcta tcaaccaaaa caaaattttg
3961 gaaatcaacc ccccagcctt tgcctcctgg tacatatgag ccagcttacc ttggaggcag
4021 agaccccaga gttgaggggg gcccatcctt acaacaggtg ttaagggacc agttaaaacc
4081 atttgccgag ccccgtggta gattacctga agcgggcttg ttggaagctg cagttgagac
4141 ggtcaccaat gctattgaac aggttatgga cacaccggtg gcatggagct acagtgatgc
4201 ttgcatgtcc ctagataaga caaccagttc cggccacccc catcacaaga agaaaaatga
4261 tgattggaat gggagttcat ttgtgagaga attgggcgac caggcggcgc atgctaacag
4321 catgtatgaa cttggtaagt ccatgaaacc tgtgtataca gcagccctaa aggatgagct
4381 agtcaaacca gacaaggtgt acacaaaaat caaaaagaga ctgctctggg gcgcggacct
4441 cggtaccgtc attcgcgctg ccagagcatt tggaccattt tgtgaggcca taaaacccca
4501 tgtgattaag ttgcctatca aggtgggtat gaatgccata gaggatggcc ctttgattta
4561 tgcagagcac tccaaatata aatttcatta tgatgctgac tatacagctt gggactcaac
4621 acaaaacaga gaaatcatga tggagtcttt caacatcatg tgtaagctca cagccaatcc
4681 ctccttggcc gcagtggtgg cgcaggatct actctcccca tctgaaatgg atgttggtga
4741 ctatgtgatc agtgtcaaag atggtctgcc atctggcttt ccatgcactt cacaggtaaa
4801 cagcatcaac cactggattc taaccctgtg tgcattgtca gaagtcactg gcttgtcccc
4861 agatgtgata cagtcacaat cctacttctc attctatggt gatgatgaaa tagtctcaac
4921 agacatagaa tttgacccaa ttaggttgac acaaatactg aaggaatatg gtttgaaacc
4981 tacaagacct gacaaaactg atggcccaat tattgtcaga caacaggttg atggtctagt
5041 cttcctccgg cgcaccatct ctaaggatgc cattggatac cagggacgac tcgaccgtaa
5101 ctctattgaa aggcagcttt ggtggactcg cggaccaaac catgaggacc catttgagac
5161 actggtccca cattcacaga gaaaggtcca attaatatcc ttgctgggtg aagcagcact
5221 ccacggtgaa aagttctaca ggaagatagc tggtagggtt attcaagaag tcaaagaggg
5281 agggcttgaa atctacattc ctggttggca ggccatgttc cgctggatgc gactccatga
5341 tctaagtttg tggacaggag accgcgatct cctgcccgat tatgtaaatg atgatggcgt
5401 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggccagctg gtaccagagg
5461 caaatacagc tgagcctata tcaatggagc ccgtggctgg ggcagcaaca gctgccgcaa
5521 ctgctggcca agttaatatg attgacccct ggataatgaa caattatgta caagcccccc
5581 aaggtgaatt taccatatcg cctaacaaca caccaggtga cattttgttt gatttacaat
5641 taggccccca tcttaaccct ttcttgtctc atttggccca aatgtataac ggctgggttg
5701 gcaatatgaa agtgaaggtt ctattggctg gcaatgcttt cacggctggc aaaataatta
5761 ttagttgcat accccctggc ttcgccgcac aaaatatttc tattgcccag gctaccatgt
5821 tcccccatgt catagctgat gtcagggtgt tggaacccat tgaggtgcca ttggaagatg
5881 tgaggaatgt gctctttcac aacaatgata acacgccaac tatgcggttg gtgtgcatgc
5941 tctacacccc cttgcgggcc agtggtagct cgtctggaac tgaccccttt gtgattgccg
6001 ggcgtgtttt gacatgcccg agtcctgatt ttagcttttt gtttttggtc ccccccaatg
6061 tggaacaaaa gaccaagcct tttagtgtcc caaaccttcc attgaacacc ctttcaaatt
6121 cgagagtccc ttctctaatt aaatcaatga tggtgtctag ggaccatggg cagatggttc
6181 agtttcaaaa tggtagggtc accctagatg gacagttgca aggcaccaca cccacatcag
6241 ctagtcagct gtgcaaaatc aggggcagtg tctttcatgc caatggtggg aatgggtata
6301 acctaacaga actggatggg agcccatacc atgcatttga gagccccgca ccaatagggt
6361 ttccagatct gggtgaatgt gattggcaca tggaggcttc tcctaccacc caatttaata
6421 ctggagatgt cataaaacaa attaatgtca aacaagagtc agcatttgcc cctcaccttg
6481 gcactataca ggcagacggc ctgagtgatg tgagtgtcaa caccaacatg atagctaaat
6541 taggatgggt gtcacccgtc agtgatggtc acaaaaggga tgtcgacccg tgggtcatcc
6601 cacgctatgg ttcaaccctg actgaggccg cccaattagc ccccccaata tatcccccag
6661 gctttggtga ggccattgtg tttttcatgt cagattttcc cattgcccat ggtaccaatg
6721 gcttaagtgt gccctgcacc ataccccaag aatttgtcac ccattttgtc aatgaacaag
6781 cccctactag aggggaagca gccttgctac attatctgga ccctgatact catagaaatc
6841 ttggtgagtt caaattatat cctgatggct tcatgacatg tgtgcctaac tccagtggca
6901 ctggtccaca aactcttcca attaatggtg tctttgtttt tgtgtcctgg gtttctagat
6961 tttatcaatt aaagcctgtg ggaacagccg gcccggctcg taggcttggg attaggagat
7021 cataatggct caagccatac ttggagccat agcagcaaca gcagccggta gtgctgttgg
7081 tgctggtata caagctggaa ccgaagctgc cctacagcat caaagatttc agcaagattt
7141 gaccttacaa aagaattcct ttattcatga taaagagatg atgggtctac aggtagaggc
7201 ttcaactgca ctcctccaaa acagtttggg tacaaggtac aatatgttaa ccaaagctgg
7261 gatgacatcc gcagacgcgg ctcgtatggt agtgggggcg cctgctactc gtgtcattga
7321 ctggaatgga actaggatcg ccgcgcccat gtcaactgcg acgacactta ggtctggtgg
7381 ttttatgacc gtgccaactg tttatagggg tggtaagaat aaacaatcaa ttggtggtgg
7441 tttttctaat gtaaattatg atccctcagt ctcctcttct cgtacttctc aatgggtctc
7501 ttctcaaaat tcaatgcgtt ctactttgga accatttcat ccaggtgctc tgagaaccac
7561 atgggtcact ccacctgggt caacttctac ttctacaatt tccacagtct ctactgtgcc
7621 aaaattcttc aatacagaaa ggttaccctt attcgcaaac aggggtaagt gatttttgta
7681 atatgaatta gtgggcatca tattcaattt ggaatcaatt agatatttag attggcagat
7741 gatgttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//