Typing tool
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Typing tool
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Complete norovirus genomes
| KY905334 | GII.3 | |
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| GII.P12 |
ORF1: 1..5068
ORF2: 5049..6695
ORF3: 6695..7459
LOCUS KY905334 7498 bp RNA linear VRL 15-AUG-2017
DEFINITION Norovirus GII strain Hu/GII.P12_GII.3/QLDB207/2016/AU, partial
genome.
ACCESSION KY905334
VERSION KY905334.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7498)
AUTHORS Lun,J.H. and White,P.A.
TITLE Emerging Recombinant Noroviruses in the Oceania Region, Identified
by Both Clinical and Wastewater Screening
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7498)
AUTHORS Warrilow,D., Huang,B., Lun,J.H. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2017) Forensic and Scientific Services, 39
Kessels Rd, Coopers Plains, Queensland 4108, Australia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R8
Sequencing Technology :: Illumina; NextSeq
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7498
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P12_GII.3/QLDB207/2016/AU"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Australia"
/collection_date="Sep-2016"
/note="genotype: GII.P12/GII.3"
CDS <1..5068
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="ARO77086.1"
/translation="AAANSNNDNAKSSSDGVLSSMAVTFKRALGARHKQPPPRETSQR
PPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPDEANTAFSVPPL
NQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELAPLSL
FWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLCRRMIQRTT
GFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKVRPLNILNILA
SCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMG
GIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMV
RSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTI
NALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGD
QRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIEN
KGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDM
WKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEY
ELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTMPELKQALKNVA
IKSCQIVYGGCTYRLESDGKGDVKVDRVQNATVQTNNELAGALHHLRCARIRYYVKCV
QEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGCPKPQDDEEFVV
SSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDR
DRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPD
DFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIP
QGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIKRPT
GELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGN
DYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGGAPKLSTKT
KFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGRPPKPSVLE
AAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLAD
QASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFG
GLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVLAAA
LEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLL
TLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDK
TEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIP
HSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDL
STWEGDRNLAPSFVNEDGVE"
CDS 5049..6695
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="ARO77087.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTESIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDTPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP
TRFTPVGIGVDREADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
CDS 6695..7459
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="ARO77088.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANVINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAAHRTTPNFKMNQAPKSTPSSGSSVRSLSTQVTSLSS
HSSGSSRSSESTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
3'UTR 7460..7497
ORIGIN
1 cgctgctgct aacagcaaca acgacaacgc aaaatcttca agtgacggag tgctttctag
61 catggctgtc acttttaaac gagccctcgg ggcgcggcat aaacagcccc ccccgaggga
121 aacatcacaa aggcctccac gaccacccac cccagaactg gtgaaaaaga tccctcctcc
181 cccacccaac ggggaggacg agctagtggt ctcttacagc gccaaagatg gcgtttctgg
241 tttgcctgaa ctcaccactg tccggcaacc ggatgaggcc aacacggcgt tcagtgttcc
301 ccctctcaac cagagggaga acagggacgc caaggagccg ctgaccggaa caatcctgga
361 aatgtgggac ggggagatct atcattacgg tctgtatgtg gagcgaggtc ttgtacttgg
421 tgtgcacaaa ccaccagctg ccatcagcct cgccaaggtt gaactggcac cactctctct
481 attttggagg ccagtgtaca caccacagta cctcatctct ccagacactc ttaggagact
541 gcatggagag tcgttcccct atacagcttt tgacaacaac tgctatgcct tctgttgttg
601 ggttctggac ctaaacgact cgtggttgtg caggagaatg attcagagaa caactggctt
661 cttcagacct taccaagagt ggaacaggaa acccctcccc accatggatg attctaaatt
721 gaaaaaggta gccaacatat tcttgtgtgc gctatcttcg ctattcacta ggcccatcaa
781 agacataata ggaaaggtga gaccgctcaa catccttaat atcctggcct catgtgattg
841 gacttttgca ggcatagtgg aatctttgat cctcttggca gagctctttg gagttttctg
901 gacaccccca gatgtgtctg caatgatcgc ccccttacta ggtgactacg agctgcaggg
961 gcctgaggac cttgcagtgg aactcgtacc agtagtgatg ggagggattg gtttggtgtt
1021 aggattcacc aaagagaaga tcggaaaaat gttgtcatct gctgcttcca ccttaagagc
1081 ttgtaaagac cttggtgcat acggactgga aatcctaaaa ttggtcatga aatggttctt
1141 cccaaagaaa gaggaagcaa atgagctagc tatggtgagg tccatcgagg atgcggtact
1201 ggacctcgaa gcaattgaga acaaccatat gactgccctc cttaaagaca aagacagcct
1261 ggcaacctac atgaggaccc ttgacctcga ggaggagaaa gccaggaagc tttcaaccaa
1321 gtctgcttca cctgacatcg tgggcacaat caacgctctt ctggcgagaa tcgccgctgc
1381 acgttccctg gtgcatcggg cgaaagagga actctccagc aggccaagac ctgttgttgt
1441 tatgatatca ggtaggccag ggatagggaa gactcacctt gccagggagc tagccaaaaa
1501 gatcgcagct tcgctcacag gggaccagcg cgtgggcctc atccctcgca atggcgttga
1561 ccattgggat gcatacaagg gagaaagagt cgtcctatgg gacgattatg gaatgagcaa
1621 tcccatccac gacgccctca ggttacagga acttgctgac acctgccccc tcacgctaaa
1681 ctgtgacagg attgagaata aaggaaaggt ctttgacagt gatgccataa tcatcaccac
1741 taatttagct aacccagcac cattggacta tgtcaacttt gaagcgtgct cgaggcgcat
1801 tgacttcctc gtgtacgcag aagcccctga ggtcgagaaa gcaaagcgtg acttcccagg
1861 tcaacctgac atgtggaaga acgcatttag ttctgacttc tcgcacataa aactggcgct
1921 ggctccgcaa ggtggtttcg acaagaacgg aaacacccca cacgggaaag gcgttatgaa
1981 gactctcacc actggttccc tcatcgcccg agcatcaggg ctactccatg agaggttaga
2041 tgagtacgag ctgcagggcc caactcccac cacctttaat tttgaccgca acaaggtgct
2101 tgcgttcaga caacttgctg ccgaaaacaa gtacggattg ttggacacaa tgagagttgg
2161 aaaacagctc aaggatgtta agaccatgcc agagctcaaa caggcactca agaatgttgc
2221 aatcaagagt tgtcagatag tgtatggtgg ctgcacctac aggcttgagt ctgatggcaa
2281 gggtgatgta aaagttgaca gagttcagaa cgctactgta cagaccaaca atgagcttgc
2341 cggcgcacta caccatctta ggtgcgccag aatcagatat tatgtcaagt gtgttcagga
2401 ggccctgtat tccatcatcc aaattgctgg ggccgcattt gtcaccacgc gcattgtcaa
2461 gcgcatgaac atacaagatc tctggtctaa gccacaggtg gaggatacag aggaaatcgc
2521 tagcaaggat ggatgcccaa aaccccagga tgatgaagag tttgttgtct catccgatga
2581 catcaaaacc gagggcaaga aagggaaaaa caagtctggc cgtggcaaga agcacacagc
2641 attctcaagt aaaggtctca gtgatgaaga gtacgatgag tacaaaagaa tcagagaaga
2701 aagaaatggc aaatactcca tagaggaata cctccaggac agagacaggt attatgagga
2761 ggtggccatc gccagggcaa ccgaagagga cttctgtgaa gaagaagagg ccaagatccg
2821 acagaggatc ttcaggccaa caagaaaaca acgcaaagag gagagagcct ctctcggttt
2881 ggtcacaggt tctgaaatca ggaagaggaa cccagacgac ttcaagccta aaggaaagct
2941 gtgggctgat gatgacagga gtgttgacta caatgagaga ctcaattttg aagccccacc
3001 aagcatctgg tcgaggatag tcaactttgg ttcaggttgg ggcttttggg tttcccccag
3061 cctgttcata acatcaactc atgtcatacc ccagggcgca caggagttct ttggtgtatc
3121 catcaaacaa attcagatac ataaatcagg tgaattctgc cgcttgaggt ttccaaagcc
3181 gatcagaact gacgtgacag gcatgatctt agaagaaggt gcacccgaag gaaccgtggt
3241 cacattactc atcaaaagac caactggaga gctcatgccc ctggcagcca gaatgggaac
3301 ccacgcaacc atgaagatac aagggcgcac tgttggaggt caaatgggca tgctcctaac
3361 aggatccaac gccaagagca tggacctggg caccacacca ggtgactgtg gctgccccta
3421 catttacaag agggggaatg actacgtggt cattggggtc cacacagccg ccgcccgcgg
3481 aggaaacact gtcatttgtg ccacccaggg gagcgaggga gaagccacac ttgaaggcgg
3541 tgatagcaag gggacctact gcggtgcacc aatcttaggt ccaggaggtg ccccaaaact
3601 cagcaccaag accaagttct ggaggtcatc cacggcacca cttccacctg gtacctatga
3661 accagcttac ctcggcggca aggatcccag agtcaagggt ggcccttcac tgcaacaagt
3721 tatgagggat caactgaaac cattcactga gcctaggggt aggccaccaa aaccaagtgt
3781 gctagaagct gccaagaaaa ccatcgtcaa tgtccttgaa cagacaattg acccacctca
3841 aaaatggtcg tttgcgcagg catgcgcatc ccttgataag accacttcta gcggtcatcc
3901 gcaccatatg cggaagaacg actgctggaa cggggagtcc ttcacaggaa aattggcaga
3961 ccaggcttct aaggccaacc tgatgtttga ggagggaaag aacatgaccc cagtttacac
4021 gggtgcgctt aaggacgagc tggtcaagac tgacaagatt tatggtaaga tcaaaaagag
4081 gcttctctgg ggttcggacc tggcgaccat gattcggtgc gctcgagcat tcgggggtct
4141 gatggaggaa cttaaagcac attgtgtcac actacctgtt agggtgggta tgaatatgaa
4201 tgaagatggc cctatcatct ttgagagaca ctccagatat aaatatcatt atgatgctga
4261 ctactcccgg tgggattcaa cacaacaaag agccgtgttg gcagcagcct tagaaattat
4321 ggtcaagttt tccccagagc cgcacctggc ccaaaaggtt gcagaagacc ttctctctcc
4381 cagcgtgatg gacgtgggtg atttcaaaat atcaatcaat gagggtctcc cctccggagt
4441 gccctgcacc tcccaatgga attccatcgc ccactggctc ctcaccctct gtgcactctc
4501 cgaagttaca aatctgtccc ctgacattat tcaggccaac tctctctttt ctttctacgg
4561 tgatgatgaa attgtgagta cagacataaa attagaccca gaaaaactga cagcaaaact
4621 taaggaatat gggttgaaac cgacccgccc tgacaaaact gaagggcctc ttgtcatttc
4681 cgaagacctg aatggcctaa ccttcctgcg gaggaccgtg acccgtgacc cagcaggctg
4741 gtttggaaag ttggaacaga gctcaatact cagacaaatg tactggacta ggggccccaa
4801 ccatgaagat ccatctgaaa caatgatacc acactcccag aggcccatac aattgatgtc
4861 tttgctgggt gaggcagcac tccacggccc agcattctat agtaaaatca gcaaactggt
4921 cattgcagag ttgaaggaag gtggcatgga tttttacgtg ccaagacaag agccaatgtt
4981 cagatggatg agattctcgg atctgagcac gtgggagggc gatcgcaatc tggctcccag
5041 ttttgtgaat gaagatggcg tcgaatgacg ccaccccatc taatgatggt gccgccggcc
5101 tcgtcccaga gatcaacaat gaggcaatgg cgctagaacc agtggcgggt gcagcgatag
5161 cagcacccct cactggccaa caaaatataa ttgatccctg gattatgaat aattttgtgc
5221 aagcacctgg tggtgagttc acagtatctc ctaggaattc ccctggtgaa gtgctcctca
5281 atttggaatt gggcccagag ataaacccct atctggccca tcttgctaga atgtataatg
5341 gttatgcagg tgggtttgaa gtgcaggtag tcctagctgg aaatgcgttt acagcaggaa
5401 agataatctt tgcagctata ccccctaact tcccaattga caatctaagt gcagcacaga
5461 tcacaatgtg cccacatgtg attgtggatg tcaggcagtt ggaaccggtc aacctcccga
5521 tgcctgacgt tcgcaacaac ttcttccact acaaccaagg gtctgattcg agattgcgct
5581 tggttgcaat gctgtacaca cctcttaggg caaataactc tggggatgat gttttcactg
5641 tgtcttgtag agtgttgact agacctagcc ctgacttttc atttaacttc cttgtgccac
5701 ccactgtgga gtcaaagaca aaacccttca ccctcccaat tctgactatc tctgaaatgt
5761 ctaattctag gtttccagtg ccgattgatt ccctgcacac cagcccaact gagagtattg
5821 ttgtccagtg ccaaaatgga cgcgtcactc ttgatggtga gttgatgggc accactcagc
5881 tcttacctag tcaaatctgt gctttcaggg gcgtgctcac tagatcaaca agcagggcta
5941 gtgaccaggc cgacacagca acccctagat tgtttaatta ttattggcac atacaattgg
6001 ataatctaaa tgggactcct tatgatcctg cagaagacac accaggcccc ctggggacac
6061 cagatttccg gggcaaagtc ttcggcgtgg ccagccaaag aaaccccgac agtacaacta
6121 gagcacatga agcaaaggtg gacacaacag ctggtcgctt caccccaaaa ctaggctcat
6181 tagagatatc cactgaatct gatgactttg accaaaatca accaacaaga ttcaccccag
6241 ttggcattgg ggttgaccgc gaggcagact tccaacaatg gtccttaccc gactactctg
6301 gccagttcac tcacaacatg aacttagccc cagctgttgc tcccaacttc cctggtgagc
6361 agctcctttt cttccgctca cagttaccat cttctggtgg gcgatccaat gggattctag
6421 actgcctggt cccccaagaa tgggttcagc acttctacca agaatcagcc cccgcccaaa
6481 cccaggtggc tctggttaga tatgtcaacc ctgacactgg tagagtgttg tttgaggcaa
6541 agctgcacaa attaggcttc atgactatag ctaagaatgg tgattctcca ataactgtcc
6601 ctccaaatgg atactttagg tttgaatctt gggtgaaccc attttataca cttgccccca
6661 tgggaactgg gaatgggcgt aggagagttc aataatggct ggagctttta tagcaggatt
6721 agctggtgat atattcacaa atactgtagg gtctctagtt aatgcagggg caaatgttat
6781 taaccaaaaa gttgattttg aaaataataa atatttgcaa aatgcttcct tcaatcatga
6841 taaggaaatg ttaaatgcac agattgaggc aacaaagagg ttacaggctg acatgattgc
6901 tatcaaacag ggggttttga ccgctggcgg cttttccccc actgatgcag ctcgcggggc
6961 aattaatgcc cccatgacaa aagtcctaga ttggaatgga acaaggtact gggcaccgag
7021 tgccacctct acaacctcga tgtcgggtgg cttcacaaac caggctgcgc acagaaccac
7081 accaaatttt aaaatgaacc aggcccccaa atccacaccc agcagtgggt cttcagtgag
7141 gtcactctca acccaagtca ctagtctgag ctcacactcg tccgggtcgt ctcgatccag
7201 cgagtctaca gttgctagct cattaccatc ctctaacagg actagggact gggtcaatca
7261 gcaaaatttc aatttggaac cacacatgcc tgggtcactt aggacggctt ttgtcactcc
7321 accatctagt acagcctcta gttcaggcac tgtctcaacc gtgcccaaaa atgttttgga
7381 ctcctggaca tctgcgttta acacgcgcag acagccgcta ttcgcacacc ttcgtagaag
7441 gggggagtca aatgtttagt gaaaaggtta ttttaaattt gatttaaatt ggatttga
//