Typing tool
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Typing tool
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Complete norovirus genomes
| KY905333 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5055
ORF2: 5036..6658
ORF3: 6658..7464
LOCUS KY905333 7497 bp RNA linear VRL 15-AUG-2017
DEFINITION Norovirus GII strain Hu/GII.Pe_GII.4 Sydney 2012/QLDB101/2016/AU,
partial genome.
ACCESSION KY905333
VERSION KY905333.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7497)
AUTHORS Lun,J.H. and White,P.A.
TITLE Emerging Recombinant Noroviruses in the Oceania Region, Identified
by Both Clinical and Wastewater Screening
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7497)
AUTHORS Warrilow,D., Huang,B., Lun,J.H. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2017) Forensic and Scientific Services, 39
Kessels Rd, Coopers Plains, Queensland 4108, Australia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R8
Sequencing Technology :: Illumina; NextSeq
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7497
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.Pe_GII.4 Sydney 2012/QLDB101/2016/AU"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Australia"
/collection_date="Sep-2016"
/note="genotype: GII.Pe/GII.4 Sydney 2012"
CDS <1..5055
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ARO77083.1"
/translation="SNNDIAKSSSDGMFSNMAVTFKRALGARPKQPPPKEIPPRPPRP
PTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETSTAFSVPPLNQRE
SRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLARVELAPLSLFWRP
VYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFR
PYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNILATCDW
TFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIVMGGIGL
VLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRSIE
DAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINSLL
ARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQRVG
LIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGKV
FDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKNA
FSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYELQG
PALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALNNIAIKKC
QIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELSGALHHLRCARIRYYVKCVQEAL
YSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEEFVVSSDD
IKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYY
EEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPEDFKP
KGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAK
EFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELM
PLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVV
IGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWR
SSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKK
TIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASK
ANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMD
ELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIM
VKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCA
LSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGP
LVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPFETMIPHSQR
PIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWE
GDRNLAPSFVNEDGVE"
CDS 5036..6658
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="ARO77084.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHTTGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFQTDTDRDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRSTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQTDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6658..7464
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="ARO77085.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
3'UTR 7465..7497
ORIGIN
1 agcaacaacg acatcgcaaa atcttcaagt gacggtatgt tttctaacat ggctgtcact
61 tttaagcggg ccctcggggc gcggcctaaa cagccgcccc cgaaggaaat accacccaga
121 cccccgcgac cacccacacc agaattggtc aaaaagatcc ctcctccccc acccaacggg
181 gaggatgaac tagtggtctc ttacagcgcc aaagatggcg tttccggact gcctgagctc
241 accactgtca gacaaccgga agaaaccagc acggcgttca gtgtcccccc actcaaccaa
301 agggagagca gggacgccaa ggagccacta actggaacaa ttattgaaat gtgggatgga
361 gaaatctacc attacggcct atacgtggaa cgaggtctta tacttggtgt gcacaagcca
421 ccggcagcca ttagccttgc tagggtcgag ctagcaccgc tctctttgtt ctggagacct
481 gtatataccc cccagtacct catctcccca gacaccctta ggagattaca tggagagtca
541 ttcccctaca ctgcatttga caacaattgc tacgcctttt gttgctgggt gttagaccta
601 aacgactcat ggctaagcag gagaatgatt cagagaacaa caggcttctt caggccgtac
661 caggattgga acaggaaacc cctccccact atggatgatt ccaaactaaa gaaggtagcc
721 aacatattct tgtgcacttt gtcttcacta ttcaccagac ccattaagga cataataggg
781 aagttgaaac ctcttaacat ccttaacatt ctggctacat gtgattggac cttcgcaggc
841 atagtggaat ccttaatact cttggcagaa ctctttggag ttttctggac acccccagat
901 gtgtctgcga tgatcgcccc cttgctaggt gattatgaac tgcaaggacc tgaggacctt
961 gcagtggaac tggtcccaat agtgatgggg gggataggtt tggtgctagg atttaccaaa
1021 gagaaaatcg gaaagatgct atcctccgct gcatccactt taagagcttg taaagacctt
1081 ggtgcatacg gactggaaat cttaaaattg gtcatgaagt ggttcttccc aaagaaagag
1141 gaagcaaatg aactggctat ggtgagatcc atcgaggatg cagtgttaga cctcgaggca
1201 attgaaaaca accacatgac caccctactc aaagacaaag acagcttggc aacctacatg
1261 agaacccttg accttgaaga ggagaaagcc agaaaactct caaccaagtc tgcttcaccc
1321 gatattgtgg gcacaatcaa ctctcttctg gcaagaatcg ctgctgcacg ttccctagtg
1381 catcgggcaa aagaagagct ctccagcagg ccgagacctg tcgttgtgat gatatcggga
1441 aggccaggga tagggaaaac tcaccttgcc agggagctgg ccaagaagat cgcggcctcc
1501 ctcacagggg accagcgtgt gggccttatc ccacgcaatg gtgtcgacca ttgggacgca
1561 tacaagggcg aaagagttgt cctatgggac gactatggaa tgagcaaccc catccatgac
1621 gccctcaggt tgcaggagct tgctgacact tgccccctca cgctaaattg tgacaggatt
1681 gagaacaaag ggaaagtctt tgacagtgat gccataatca tcaccaccaa tctggccaac
1741 ccagcaccac tggattatgt caactttgaa gcgtgctcga gacgtattga tttcctcgtg
1801 tacgcagaag cccctgaggt ggagaaggca aagcgcgact tcccaggtca acctgacatg
1861 tggaagaacg ctttcagtcc tgacttctca cacataaaac tgtcattggc tccacagggt
1921 ggttttgaca agaacggcaa caccccgcat ggaaaagggg tcatgaagac cctcaccact
1981 ggctccctca tcgcccgagc atcagggtta ctccatgaga ggctagatga atatgaactg
2041 caaggcccag ccctcaccac cttcaacttt gaccgcaaca aggtacttgc ttttagacag
2101 cttgctgctg aaaacaagta tgggctgatg gacacaatga gagttggaaa acagctcaag
2161 gatgtcaaga ccatgtcaga cctcaaacaa gcactcaata acatcgcgat caagaagtgc
2221 cagatagtgt acaatggtgg cacctacaca cttgaggctg atggcaaggg tagtgtgaaa
2281 gttgacaaag tgcaaagtgc cactgtgcag accaacaatg aactatctgg tgccctacac
2341 cacctaaggt gcgctagaat cagatactat gtcaagtgcg tccaggaggc actgtattcc
2401 atcatccaaa tcgctggggc tgcattcgtc accacgcgca tcgctaagcg catgaatata
2461 cagaatctct ggtccaagcc acaggtggaa gacacagaag agatggccaa caaagatggt
2521 tgcctaaagc ccaaagatga tgaggagttt gtcgtctcat ccgacgacat caaaactgag
2581 ggcaagaaag ggaagaacaa gtccggccgt ggcaagaagc acacagcctt ttcaagcaaa
2641 gggctcagtg atgaggagta cgatgagtac aagagaatca gagaagaaag gaatggtaag
2701 tactccatag aagagtacct tcaggacaga gacaggtact acgaggaggt ggccattgcc
2761 agggcaaccg aagaggactt ctgtgaagaa gaagaggcca aaatccggca gagaattttc
2821 agaccaacaa ggaaacaacg caaagaagag agggcctctc tcggcttggt cacaggctct
2881 gaaatcagga aaagaaaccc agaagacttc aaacccaagg gaaagctgtg ggctgatgat
2941 gacagaagtg ttgactacaa tgagaaactc aactttgagg ccccaccaag catctggtcg
3001 cggatagtca actttggttc aggctggggc ttctgggtct cccccagtct gtttataaca
3061 tcaacccatg tcatacccca aggtgcaaaa gagttcttcg gagtccctat caagcaaatc
3121 caaatacaca agtcaggtga attctgccgg ttgagattcc caaaaccaat cagaactgat
3181 gtgactggca tgattctaga agaaggtgcg cccgagggga ccgtggccac actgctcatc
3241 aagagaccaa ctggagagct catgcctctg gcagccagaa tggggaccca tgcaaccatg
3301 aaaattcagg ggcgcacagt tggagggcaa atgggtatgc tcctgacagg atccaacgcc
3361 aagagtatgg acctaggcac aacaccaggc gactgcggct gcccctacat ctacaagagg
3421 gggaatgact atgtggtcat aggagtccat acggccgctg cccgtggagg aaacactgtc
3481 atatgtgcca cccaggggag tgagggagaa gccacacttg aaggaggtga cagtaaaggg
3541 acatactgtg gcgcaccaat cttgggccca gggagcgctc cgaagctcag caccaagact
3601 aagttttgga gatcatccac aacaccactc ccacccggca cctacgaacc agcctacctc
3661 ggtggcaaag accctagagt caaaggtggc ccttcattgc aacaagttat gagggaccag
3721 ctgaagccat tcacagaacc cagaggcaaa ccaccaagac caaatgtgct ggaagctgcc
3781 aagaaaacca tcatcaatgt ccttgagcaa acaattgatc caccccaaaa atggtcattt
3841 gcgcaagctt gcgcatccct tgacaaaacc acctccagcg gccacccgca ccacatgcgg
3901 aaaaacgact gttggaatgg ggagtccttc acaggaaaac tggctgatca agcctccaag
3961 gccaacctaa tgtttgagga gggaaagaac atgactccgg tctacacagg tgcacttaaa
4021 gatgagttgg taaagaccga taaagtttat ggtaaggtca aaaagaggct tctgtggggt
4081 tcagatctag cgaccatgat acggtgcgcc cgagcttttg ggggccttat ggatgaactc
4141 aaggcacact gtgtcacact tcctgtcaga gttggtatga acatgaatga ggatggcccc
4201 atcatctttg agaagcactc cagatataga tatcactatg atgctgatta ctcccggtgg
4261 gactcaacac aacaaaggga cgtactagca gcagcactag aaatcatggt taagttctct
4321 ccagaaccac acctggccca gatagttgca gaagacctcc tttcccctag cgtgatggat
4381 gtaggtgact ttcaaatatc aataagtgag ggtctcccct ctggggtacc ttgtacctcc
4441 cagtggaatt ccatcgccca ctggctcctc actctgtgtg cactctctga ggtcacggac
4501 ctgtcccctg atatcattca ggccaactcc cttttctcct tctatggtga tgatgagatt
4561 gtaagcacag atataaagtt ggacccagag aagctgacag caaaactcaa ggagtacggg
4621 ctgaaaccaa cccgccccga caaaactgaa ggaccccttg ttatctctga agacctggat
4681 ggcctgacat tcctccggag aactgtgacc cgtgatccag ctggctggtt tggaaaattg
4741 gaacaaagtt caattctcag gcaaatgtac tggaccaggg gtcctaacca tggagaccca
4801 tttgaaacaa tgataccaca ctcccaaaga cccatacaat tgatgtcctt gctgggcgag
4861 gctgcactcc acggcccggc attctatagc aaaattagca aactagtcat tgcagagttg
4921 aaggaaggtg gcatggattt ttacgtaccc agacaagagc caatgttcag atggatgaga
4981 ttctcagatc tgagcacgtg ggagggcgat cgcaatctgg ctcccagttt tgtgaatgaa
5041 gatggcgtcg agtgacgcca acccatctga tgggtccgca gccaacctcg tcccagaggt
5101 caacaatgag gttatggctc tggagcccgt tgttggtgcc gccattgcgg cacctgtagc
5161 gggccaacaa aatgtaattg acccctggat tagaaataac tttgtacaag cccctggtgg
5221 agagttcaca gtatccccta gaaacgctcc aggtgaaata ctatggagtg cgcccctggg
5281 ccctgatcta aatccctacc tatcccattt ggccaggatg tacaatggtt atgcaggtgg
5341 ttttgaagtg caggtaatcc tcgcggggaa cgcgttcacc gccgggaagg tcatatttgc
5401 agcagtccca ccaaattttc caactgaagg cttgagcccc agccaggtca ctatgttccc
5461 ccatatagta gtggatgtta ggcaactaga acctgtgttg attcccttac ccgatgttag
5521 gaataatttc taccattata atcaatcaaa tgaccccacc attaagttga tagcaatgtt
5581 gtatacacca cttagggcta ataatgctgg ggatgatgtc ttcacagttt cctgccgagt
5641 tctcacgaga ccatcccccg attttgattt catatttcta gtgccaccca cagttgagtc
5701 aagaactaaa ccattctctg tcccagtttt aactgttgag gagatgacca attcaagatt
5761 ccccatccct ttggaaaagt tgttcacggg tcccagcagt gcctttgtcg tccaaccaca
5821 aaacggcagg tgcacgaccg acggcgtgct cctaggcacc acccaactgt ctcctgtcaa
5881 catctgcacc ttcagaggag atgtcaccca taccacaggt agtcataact acacaatgaa
5941 cttggcttct caaaattgga gcaattatga cccaacagaa gaaatcccag cccctctagg
6001 aactccagat tttgtaggga agattcaggg cgtactcacc caaaccacaa ggacagatgg
6061 ctcaacacgc ggccacaaag ccacagtgta cactgggagc gccgactttg ctccaaaact
6121 gggtagagtt caatttcaaa ctgacacaga ccgtgatttt gaagctaacc aaaacacaaa
6181 gttcacccca gttggtgtca tccaagatgg tggcaccacc caccgaaatg aaccccagca
6241 gtgggtgctt ccaagttact caggcagaag tactcccaat gtgcatctgg ccccagctgt
6301 agcccccact ttcccgggtg agcaacttct cttcttcaga tccactatgc ccggatgcag
6361 cgggtacccc aacatggact tggactgtct gctcccccag gaatgggtgc agcacttcta
6421 ccaagaggcg gccccagcac aaactgatgt ggctctgcta agatttgtga acccagacac
6481 aggtagggta ttgtttgagt gtaagcttca taaatcaggc tatgttacag tggctcacac
6541 cggccaacat gatttggtta ttccccccaa tggttatttt aggtttgatt cctgggtcaa
6601 ccagttttac acgcttgccc ccatgggaaa tggaacgggg cgtagacgtg cactataatg
6661 gctggagctt tctttgctgg attggcatct gatgtccttg gctctggact tggttccctt
6721 atcaatgctg gggctggggc cattaaccaa aaagttgagt ttgaaaataa cagaaaattg
6781 caacaagcat ccttccaatt tagcagcaat ctacaacagg cttcctttca acatgacaaa
6841 gagatgctcc aagcacaaat tgaggccacc aaaaggctac aacaggaaat gatgaaagtc
6901 aagcaggcaa tgctcctgga gggtggattc tctgagacag atgcagcccg cggggcaatc
6961 aacgccccca tgacaaaagc tttggactgg agcgggacaa ggtactgggc tcccgatgct
7021 aggactacaa catacaatgc aggccgcttt tccacccctc aaccatcggg ggcactgcca
7081 ggaagagcta atctcaggga tgctgtccct gcccggggtt cctccagtaa gtcttctaat
7141 tcttccactg ctacttctgt gtactcaaat caaaccactt caacgagact tggttctaca
7201 gctggttctg gcaccagtgt ctcgagcttc ccgtcaactg caaggactag gagctgggtt
7261 gaggatcaaa acaggaattt gtcacctttc atgagggggg cccacaacat atcgtttgtc
7321 accccaccat ctagcagatc ctctagccaa ggcacagtct caaccgtgcc taaagagatt
7381 ttggactcct ggactggcgc ttttaacacg cgcaggcagc cactcttcgc tcacattcgt
7441 aagcgagggg agtcacgggc gtaatgtgaa aagacaaaat tgattatttt acttttc
//