Typing tool
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Typing tool
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Complete norovirus genomes
| KY905332 | GII.17 | |
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| GII.P17 |
ORF1: 1..5103
ORF2: 5084..6700
ORF3: 6700..7479
LOCUS KY905332 7533 bp RNA linear VRL 15-AUG-2017
DEFINITION Norovirus GII strain Hu/GII.P17_GII.17/NSW543Q/2015/AU, partial
genome.
ACCESSION KY905332
VERSION KY905332.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7533)
AUTHORS Lun,J.H. and White,P.A.
TITLE Emerging Recombinant Noroviruses in the Oceania Region, Identified
by Both Clinical and Wastewater Screening
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7533)
AUTHORS Eden,J.-S., Lun,J.H., Tuipulotu,D.E. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2017) School of Biotechnology and Biomolecular
Sciences, University of New South Wales, Botany Street, Sydney, New
South Wales 2052, Australia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R8
Sequencing Technology :: Illumina; MiSeq
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7533
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P17_GII.17/NSW543Q/2015/AU"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Australia"
/collection_date="Jun-2015"
/note="genotype: GII.P17/GII.17"
CDS <1..5103
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ARO77080.1"
/translation="MASNDASAAVAGKNNNNDKEKSSSDSLFSNMTVTFKKALGARPK
QPPPGETKQIQKPPRPPTPELVKKIPPPPPNGEDEPKIVYKVGEGVSGLPNLTTVAQP
DAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAI
SLAKIELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLND
SWLSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIG
KLRPLNILNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPE
DLAVELVPVVMGGVGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS
TKSASPDIVGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARE
LAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADT
CPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIE
KAKRDFPGQPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIAR
ASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKT
LDELKQAIKNISIKKCQIVYNGCTYTMESDGRSKVVVEKVQNATVQTNNELIGALHHL
RSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDKGG
CPKPRDEDDLTVDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERN
GKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGL
VTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVS
PSLFITSTHVIPKGITEAFGVPTNQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPE
GTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG
DCGCPYIYKRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPIL
GPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE
PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDY
WSGESFTGKLADQASKANLMYEEGKHMQPIYTAALKDELVKTDKIYGKIKKRLLWGSD
LSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW
DSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKL
KEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRG
PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ
ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5084..6700
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="ARO77081.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNNRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV
ASQRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFRSNDNDFQLQPTKFTPVGIND
DGDHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCL
IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6700..7479
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="ARO77082.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSVYSMSTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVKPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
3'UTR 7480..7533
ORIGIN
1 atggcctcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa cgacaaggag
61 aaatcttcaa gtgacagctt gttttctaac atgactgtta cttttaagaa agccctcggg
121 gcgcggccta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc accaaggcca
181 ccgacaccgg aattggtgaa gaaaataccc ccacccccac ccaatggcga ggatgaacca
241 aagatagtgt ataaggtggg agagggtgtg tctgggctgc ccaacctaac aactgtggca
301 cagcctgacg cacaaaacac agcttatagt gttcccccac ttagccagag agaagtcggc
361 gaagctaaag aaccgctgcc tggctccatt ctggaaatgt gggatggtga gatctaccac
421 tatgggctgt atgttgagcg ggggcatgta ctcggagtac acaaaccacc tgctgcaata
481 agccttgcca aaattgaatt aacaccgctg tctctctact ggagagtggt ctacactccc
541 cagtatttga tagctccaga aactcttaag aacttgaatg gagagacttt cccatacacg
601 gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagacctcaa cgactcctgg
661 cttagcagga gaatgatcca aagaacaacc ggattcttca gaccgtatca ggattggaac
721 agaaagccct taccaaccat ggatgaaccg aaaatcaaga aggccgcgaa tgctgttctg
781 tgcgctctct cctcactctt cactagaccc attaaggaca tcattggaaa gcttagacca
841 ctgaacattc ttaatatact ggcaacttgt gactggactt ttgcaggcat agtggaatcc
901 atgatccttc ttgctgaact ctttggggtg ttctggaccc ccccagacgt gtctgcgatg
961 attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc cgtggaactt
1021 gtgcccgtgg taatgggagg agtaggtttg gtgttaggat tcaccaagga aaagatcggc
1081 aagatgcttt catcagctgc gaccacactt agggcctgca aggatctagg gtcttatgga
1141 ttggagatac tcaaattggt tatgaagtgg ttcttcccca agaaggagga ggctaacgaa
1201 ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat agaaaacaat
1261 cacatgacca cccttctcaa ggataaagac agcctggcca cgtacatgag gactcttgac
1321 ttggaagaag agaaagcaag gaaactgtca accaaatcgg cgtcacctga catcgtgggt
1381 acaataaact cattattggc aaggatagca gccgccaggt cactggtcca caaggctaag
1441 gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag accaggtata
1501 ggaaagaccc atctggccag agagctagcc aagaaagttg cgtcaacact gtcaggcgac
1561 caaaggattg gactgatacc tagaaatggc gtcgaccatt gggacgccta caagggagaa
1621 agggtggttc tgtgggatga ttatggtatg agcaacccta tacaggacgc actgaggctc
1681 caagaattgg ctgacacctg tcctctgacc ctgaattgtg ataggattga aaacaaagga
1741 aaagtgttcg acagtgatgc cataattata acaaccaacc ttgcaaaccc agcaccactg
1801 gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta tgcagacgca
1861 cctgacatcg agaaagctaa gcgtgatttc cctggccaac cagatatgtg gaaagaccat
1921 tacagaccag acttcacaca cattaaactc cagctggcac cacagggagg ttttgacaaa
1981 aatggcaaca ccccacatgg caagggtgtg gtgaagtctc tgacgattgg ttctctgatc
2041 gccagggctt ctggcttgct ccacgagaga atggatgaat tcgagctcca gggctctgac
2101 ctgccaacct tcaattttga ccgcaacaaa gtcgccgcct tcagacaatt agcagctgaa
2161 aacaaatatg gtcttatgga tacactgagg gtcggcaacc aactgaaaag tgtcaaaacc
2221 ctggatgagc tgaaacaggc cataaagaac atcagtatca agaagtgcca gatagtgtat
2281 aatggatgca cctataccat ggaatctgat gggaggagca aggttgtggt tgaaaaggta
2341 caaaacgcaa cagttcaaac caacaatgaa cttatagggg cactccacca cctgagatct
2401 gcaaggataa gatactatgt taaatgtttc caagaagcca tttactctct actccaaatt
2461 gctggtgcag ccttcgtcac ctcacgcatc gtgaggcgca tgaacatctc aaacctctgg
2521 tcgaagccac ccatcgagga gggtgatgag cctgaagaca aaggaggatg ccccaagccc
2581 agggatgaag atgacctcac tgttgactct agagacatta aagtggaagg gaagaagggc
2641 aagaacaagt ctggtcgggg caagaaacac acagccttct catccaaggg cctcagtgat
2701 gaagagtacg atgagtacaa gagaatcaga gaggagagga atggcaaata ctcaatagag
2761 gaatacctcc aagataggga cagatactat gaagagcttg ccattgctaa ggccactgag
2821 gaggacttct gtgaagagga ggagatcaaa atccgccaga gaatcttccg acccaccagg
2881 aagcagcgga aagaggaaag ggccacgctt gggcttgtca caggatcgga aatcagaaag
2941 aggaatccag atgactttaa accaaaagga aaattgtggg ctgatgacaa caggagcgtg
3001 gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag gatagtcaac
3061 tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacttc aacacacgtc
3121 ataccaaaag ggatcactga ggcctttgga gtacccacaa accaaatcca aattcacaaa
3181 tctggagaat tttgccgctt gcggtttcca aagccaatca gaccagacgt gagtgggatg
3241 atcttggaag agggtgcccc tgaaggcact gttgtgtcta ttctcatcaa aaggacaaca
3301 ggggagctga tgcctcttgc agtcagaatg gggactcatg ccacaatgaa aatccaaggt
3361 agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa aagcatggat
3421 ctaggtacaa cgccaggtga ttgcggatgt ccatacatat acaaaagggg caatgacttc
3481 gtggccattg gggtgcacac tgcagcagca cgtggaggca acacggtcat atgtgccaca
3541 cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaagggcac ctattgtgga
3601 gcccccattt tgggacctgg caatgcacca aaattgagca caaaaacaaa attctggaga
3661 tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg tgggagagac
3721 ccgcgcgtga agggaggccc atctctgcaa caagttatga gagaccaact taaacctttt
3781 acagagccca gagggaagcc accaaaccca aatgtcctag agtcagcaaa gaagactatc
3841 atcaatgttc tagaacaaac cattgacccc cctcaaaaat ggtcatatgc ccaagcttgt
3901 gcatccctcg acaaaacaac ctccagcgga tacccgcacc acgtccggaa gaatgactat
3961 tggagtggtg aatccttcac agggaaactt gcagaccagg cttcaaaagc aaatctcatg
4021 tatgaggaag gcaagcacat gcaaccaatt tacaccgcag cactcaaaga cgagctcgtg
4081 aaaactgaca aaatttatgg caagatcaag aaaagactcc tgtggggttc tgacctctcc
4141 accatgattc gatgcgccag agcatttggt ggtctcatgg atgagttcaa agcaaattgt
4201 attacactcc ctatcagagt tggtatgaat atgaatgaag acggtcccat aatatttgag
4261 aaacactcca ggtacagata ccactatgat gctgattact cccgctggga ctccacacaa
4321 cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc tgagccacag
4381 ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt gggcgatttc
4441 aaaattgcta tcaatgaagg cctaccatct ggcgtgcctt gtacctctca atggaattct
4501 attgcccact ggttactcac cctgtgtgcc ctttctgaag tgacaggact aggtcctgac
4561 atcatacaag ccaactccat gtactctttc tatggtgatg atgagattgt gagtacagac
4621 ataaaattgg acccagagaa attgaccgca aagctcaaag aatatggcct taaacccact
4681 cggcccgaca aaactgaggg gccgctggtg attagtgaag acctgaatgg gttgactttc
4741 ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga ccaaaactcc
4801 atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag tgagaccatg
4861 ataccacacg cacagagacc tgtgcagctc atggcactac taggagaatc ctccctacat
4921 ggaccctcat tttacagcaa ggttagcaaa ctggtcatat ctgaacttaa ggagggagga
4981 atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt ctcagatcta
5041 agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgaa
5101 tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca acaacgagac
5161 ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg gccaaaacaa
5221 cataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag agttcacagt
5281 gtcacccaga aactcccctg gagaaatttt actaaaccta gagttgggcc ctgatttgaa
5341 cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag tggaagttca
5401 ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg ccgtcccgcc
5461 aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac atttaatagt
5521 agatgtcagg actcttgaac caattatgat cccactccct gatgttagga acacattctt
5581 ccattataac aaccagccta acaaccgcat gagattagtg gctatgctct acactcccct
5641 tagatctaat ggctcaggtg atgatgtctt tactgtctct tgcagggttt tgactaggcc
5701 tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta agactaagcc
5761 tttttcttta cctattttaa ccctttctga gctcacaaat tcgaggttcc cagttcccat
5821 cgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa atggcaggtg
5881 cacacttgat ggtgagttac aaggcacaac ccagttgctc ccatctggca tctgtgcatt
5941 cagaggacgg gtgacagcag aaactgacca tcgtgacaag tggcacatgc aactgcaaaa
6001 cctcaatggc acaacatatg acccaactga tgatgtgcca gccccgctgg gtacacctga
6061 tttcaagggc gtcgtgtttg gggtagcaag ccaaagaaat gtgggtaatg acgcgcctgg
6121 ctcaaccagg gcccatgagg cggtgatttc aacctacagc ccccaatttg tccccaaatt
6181 aggttctgtc aattttagaa gtaatgataa tgatttccaa ttgcagccga caaaattcac
6241 accagtgggc atcaatgacg atggtgacca cccgttcaga cagtgggaac taccagatta
6301 ctcagggctg cttaccttga atatgaacct tgcccccccg gttgctccaa atttccctgg
6361 tgaacaatta ttattcttca gatcttttgt gccatgctca ggaggttaca accaaggcat
6421 tgtagattgt cttattcccc aagaatggat ccaacacttc tatcaggaat cagcgccctc
6481 ccagtcagac gtggccctaa tcaggtatgt taaccccgat acggggcgta cactgtttga
6541 agcaaaattg cacagatctg gttacattac tgtggctcac tctggagact atcctcttgt
6601 tgttccggct aatggatact ttagatttga ttcttgggta aatcagtttt actcactcgc
6661 cccaatggga actgggaatg ggcgaaggag ggctcagtaa tggctggagc tttcattgca
6721 ggattggcag gcgacatgct cacgtcatct gtgggctccc tggtgaacgc aggggcaaac
6781 gccatcaacc aaaagataga ctttgaaaac aacaaacaac tccagtctgc ttcctttcag
6841 catgataaag agatgctcca agcgcaggtg aaggcaacca agcagctgca atctgaaatg
6901 atagccctaa aacagggggt tttggccgca ggcggctttt cccccactga tgcagcaagg
6961 ggagccattg gtgcacccat gacaaaggtg cttgactggt ctggcactcg atactgggct
7021 cccaattcca caaagacaac tggttattca ggacaattca cctcttcacc tgtgcacatg
7081 cctagcccaa atgctccaca atcaaaacct gcaaagccta ggtctctagc tccttcctct
7141 tcttctagta gtgtctatag tatgtctact caatcaactc atttaacatc tggctcttct
7201 agtaatgctt cttctgcctc tacaaaattg acaaacttaa gctctggctc ctctcaaaac
7261 agaacagcag agtgggtgaa ccaacagaga agtcttagcc ctttcatgag tggcgcactc
7321 aatatctcac atgtcaagcc accctcaagt agggcttcta gttctgggac ggtctcgacc
7381 gtgcccaagg aagttttgga ctcctggacg tctgcgttta acacacacag acagccgctc
7441 ttcgcacacc tcagagtgag gggggagtca cgtgtttagt gaaaagaaat aattggctat
7501 aatgtgattt ctttttaaaa tttggctaat ttg
//