Typing tool
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Typing tool
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Complete norovirus genomes
| KY905330 | GII.17 | |
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| GII.P17 |
ORF1: 1..5084
ORF2: 5065..6687
ORF3: 6687..7466
LOCUS KY905330 7491 bp RNA linear VRL 15-AUG-2017
DEFINITION Norovirus GII strain Hu/GII.P17_GII.17/NSW9428/2016/AU, partial
genome.
ACCESSION KY905330
VERSION KY905330.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7491)
AUTHORS Lun,J.H. and White,P.A.
TITLE Emerging Recombinant Noroviruses in the Oceania Region, Identified
by Both Clinical and Wastewater Screening
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7491)
AUTHORS Eden,J.-S., Lun,J.H., Tuipulotu,D.E. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2017) School of Biotechnology and Biomolecular
Sciences, University of New South Wales, Botany Street, Sydney, New
South Wales 2052, Australia
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. R8
Sequencing Technology :: Illumina; MiSeq
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7491
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P17_GII.17/NSW9428/2016/AU"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Australia"
/collection_date="Jul-2016"
/note="genotype: GII.P17/GII.17"
CDS <1..5084
/note="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="ARO77074.1"
/translation="AAVAGKDNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPPGET
KQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQNTAY
SVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISFAKIEI
TPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
IQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNI
LNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELV
PVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEAN
ELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD
IVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVAS
TLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNC
DRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFP
GQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHE
RMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQA
IKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSARIRY
YVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDE
DDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIR
KRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITS
THVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSIL
IKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI
YKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPK
LSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPN
PNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFT
GKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRC
ARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRA
VLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKP
TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPS
ETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5065..6687
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="ARO77075.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6687..7466
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="ARO77076.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSAPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKFTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
3'UTR 7467..7491
ORIGIN
1 ccgctgccgt tgctggcaaa gacaacaaca acgacaagga aaaatcttca agtgacagct
61 tgtttgctaa catgtctgtc acttttaaga aagccctcgg ggcgcggtct aaacaaccgc
121 ccccgggaga aacaaaacaa atacaaaaac caccaaggcc accgacaccg gaattggtga
181 agagaatacc tccaccccca cccaatggcg aggatgaacc agggatagtg tacaaggtgg
241 gagagggtgt gtctgggctg cccgacctaa caactgtggt acaacctgac gcacaaaaca
301 cagcttatag tgttccccca cttagccaga gagaagtcgg cgaagctaaa gaaccgctgc
361 ctggctccat tctggaaatg tgggatggtg agatctacca ctatgggctg tatgttgagc
421 gggggcatgt gctcggagta cacaaaccac ctgctgcaat aagctttgcc aaaattgaaa
481 taacaccgct gtctctctac tggagagtgg tctacactcc ccagtatttg atagatccag
541 gaactcttaa gaacttgagt ggagagactt tcccatacac ggcctttgac aacaactgtt
601 atgccttctg ttgttgggtc ctagacctca acgactcctg gcttagcagg agaatgatcc
661 aaagaacaac tggattcttc aaaccttatc aggattggaa cagaaaaccc ttaccaacca
721 tggatgaacc gaaaatcaag aaggctgcga atgctgtcct atgcgctctc tcctcactct
781 tcactagacc cattaaggac atcattggaa agcttagacc actgaacatt cttaatatac
841 tggcaacctg cgattggact tttgcaggca tagtggaatc cttgatcctt cttgctgaac
901 tctttggggt gttctggaca cccccagatg tgtctgcgat gattgctccc ttactcggtg
961 actacgagat gcaaggcccc gaagacctgg ccgtggaact tgtgcccgtg gtgatgggag
1021 gaataggttt ggtgttagga ttcaccaaag aaaagatcgg caagatgctt tcatcagctg
1081 cgaccacact tagggcctgc aaggatctag gatcttatgg attggagata ctcaaattgg
1141 tcatgaagtg gttcttcccc aagaaggagg aggctaacga actagccatg gtgagggcca
1201 ttgaggatgc agtcctggat ttggaggcaa tagaaaacaa tcacatgacc acccttctca
1261 aggataaaga cagcctggcc acatacatga ggactcttga cttggaagaa gagaaagcaa
1321 ggaaactgtc aaccaaatcg gcgtcacctg acatcgtggg tacaataaac gcattattgg
1381 ctaggatagc agccgccagg tcactggtcc acaaggctaa ggaggagctc tcgagcagac
1441 agagacctgt tgttgtaatg atatcaggta gaccaggtat aggaaagacc catctggcca
1501 gagagttagc caagaaagtt gcgtcaacac tgtcaggcga ccaaaggatt ggactggtac
1561 ctagaaatgg cgtcgaccat tgggacgcct acaagggaga aagggtggtc ctgtgggatg
1621 attatggtat gagcaaccct atacaggacg cactgaggct ccaagaattg gctgacacct
1681 gtcctctgac cctaaattgt gataggattg aaaacaaagg aaaagtgttc gacagtgatg
1741 ccataattat aacaaccaac cttgcaaacc cagcaccact agactatgtc aactttgagg
1801 cctgctctag acgcatagac ttcttggtgt atgcagacgc acctgacatt gagaaggcta
1861 agcgtgactt ccctggccaa ccagatatgt ggaaagacca tttcagacca gacttctcac
1921 acattaaact tcagctggca ccacagggag gttttgacaa aaatggcaac accccacatg
1981 gcaaaggtgt ggtgaagtcc ctgacgattg gttctctgat cgccagggcc tccggtttgc
2041 tccacgagag aatggatgaa ttcgagctcc aaggctctga cctgccaacc ttcaattttg
2101 accgcaacaa agtcgccgcc ttcagacaat tagcagctga aaacaaatat ggtcttatgg
2161 acacattgag ggtcggcaac caactgaaaa gtgttaaaac cctggatgag ctgaagcagg
2221 ccataaagaa catcagtatc aagaagtgtc agatagtgta taatggatgc acctatacca
2281 tggaatctga tgggaggggc aaggttgtgg ttgaaaaggt acaaaacgca acagttcaaa
2341 ccaacaatga acttgtaggg gcgctccacc acctgagatc tgcaaggata agatactatg
2401 ttaaatgttt ccaagaagcc atttactctc tactccaaat tgctggtgca gccttcgtca
2461 cctcacgcat cgtgaggcgc atgaacatat caaacctctg gtcgaagcca cccatcgagg
2521 agggtgatga gcctgaagac agaggaggat gccccaagcc cagggatgaa gatgacctca
2581 ctattgactc tagagacatt aaagtggaag ggaagaaggg caagaacaag tctggccggg
2641 gcaagaaaca cacagccttc tcttccaagg gcctcagtga tgaagagtac gatgagtaca
2701 agagaatcag agaggagagg aatggcaaat actcaataga ggaatacctc caagataggg
2761 acagatacta tgaagagctt gccattgcta aggccactga ggaggacttc tgtgaggagg
2821 aggagatcaa aatccgccag agaatcttcc gacccaccag gaagcagcgg aaagaggaaa
2881 gggccacgct tgggcttgtc acaggatcgg aaatcagaaa gaggaatcca gatgacttta
2941 aaccaaaagg aaaattgtgg gctgatgaca acaggagcgt ggattacaat gagaggatag
3001 attttgaggc tcccccgagt gtttggtcta ggatagtcaa ctttggcaca ggctggggat
3061 tctgggtttc tccaagtctc tttataactt caacacacgt cataccaaaa ggaatcactg
3121 aggcctttgg agtgcccata aaccaaatcc aaattcacaa atctggagaa ttttgccgct
3181 tgcggtttcc aaagccaatt agaccagacg tgagtgggat gatcttggaa gagggcgccc
3241 ctgaaggcac tgttgtgtct attctcatca aaaggacaac aggggagctg atgcctcttg
3301 cagtcagaat ggggactcat gccacaatga aaatccaagg tagaacggtg ggtggtcaga
3361 tgggtatgct tctcactggc tcaaatgcta aaagcatgga tctaggcaca acgccaggtg
3421 actgcggatg tccatacata tacaaaaggg gcaatgacct tgtggtcatt ggggtgcaca
3481 ctgcagcagc tcgtggaggc aacacggtca tatgtgccac acagggaagt gaaggtgaag
3541 ccactcttga aggaggtgac aacaagggta cctattgtgg agcccccatt ttgggacctg
3601 gcaatgcacc aaaattgagc acaaagacaa aattctggag atcctctaac gcaccgcttc
3661 ccccaggtac ttatgaacca gcataccttg gtgggagaga cccgcgcgtg aagggaggcc
3721 catctctgca acaagttatg agagaccaac ttaaaccttt tacagagccc agagggaagc
3781 caccaaaccc aaatgtctta gagtcagcaa agaagactat catcaatgtt ctggaacaaa
3841 ccattgaccc ccctcaaaag tggtcatatg cccaagcttg tgcatccctc gacaagacaa
3901 cctccagtgg atacccgcac cacgtccgga agaatgacta ttggagtggt gaatccttca
3961 caggaaaact tgcagatcag gcttcaaaag caaatctcat gtatgaggaa ggcaagcaca
4021 tgcaaccagt ttacaccgca gcactcaaag acgagctcgt gaaaactgac aaaatttatg
4081 gcaaaatcaa gaaaagactc ctgtggggtt ctgacctctc cacaatgatt cgatgcgcca
4141 gagcatttgg tggtctcatg gatgaattca aagcaaattg tattacactc cctatcagag
4201 ttggtatgaa tatgaatgaa gatggtccca taatatttga gaaacactcc aggtacaggt
4261 accactatga tgctgattac tcccgctggg actccacaca acagcgggca gtgctggaag
4321 cggcacttga aatcatggtg agattttctg ctgagccaca gctggcacaa atagtggcag
4381 aggacctgct gtcaccaagt gtggttgatg tgggcgattt caaaatcgct atcaatgaag
4441 gcctaccatc tggcgtgcct tgcacctcac aatggaattc tattgcccac tggttactta
4501 ccttgtgtgc cctttctgaa gtgacaggat taggtcctga catcatacaa gctaactcca
4561 tgtactcttt ctatggtgat gatgagattg tgagcacaga cataaaattg gacccagaaa
4621 aattgaccgc aaagctcaaa gaatatggcc ttaaacccac tcggcccgac aaaactgagg
4681 ggccgttggt gattagtgag gacctgaatg ggttgacttt cctccgccga acagtcaccc
4741 gtgatccagc aggttggttt ggaaagttgg accaaaactc catcctcagg cagttgtact
4801 ggacaagagg acccaaccat gaagacccca gtgagaccat gataccacac gcacaaagac
4861 ctgtgcagct catggcacta ctaggagaat cctccctaca tggaccctca ttttacagca
4921 aggttagcaa attagtcata tctgaactta aagagggagg aatggatttt tatgtgccca
4981 gacaagagtc aatgttcaga tggatgaggt tctcagatct aagcacatgg gagggcgatc
5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga atgacgccgc tccatctaat
5101 gatggtgctg ctggtctcgt accagagggc aacaacgaga cccttcccct agaaccagtt
5161 gcgggcgcag ctatagccgc acccgtcact ggccaaaata atataattga cccctggatt
5221 agaacaaatt ttgtgcaagc accaaatgga gagttcacag tgtcacccag aaactctcct
5281 ggagaaattt tattaaattt agagttgggc cctgatttga acccttattt ggctcatttg
5341 tcaaggatgt acaatgggta tgctggtgga gtggaagttc aggttctcct ggcagggaac
5401 gcgttcactg ccggaaagat cctcttcgcc gccgtcccgc caaatttccc agtggaattc
5461 ttaagcccag cccagatcac aatgctccca catttaatag tagatgttag gactcttgaa
5521 ccaattatga tcccactccc tgatgttagg aatacattct tccattatag taaccagcct
5581 aacagccgca tgagattagt ggctatgctc tataccccac tcagatctaa tggctcaggt
5641 gatgatgtct ttactgtctc ttgcagggtt ttgactaggc ctactcctga ttttgagttc
5701 acttatttag tgccaccttc tgttgaatct aaaactaagc ctttttcctt acctatttta
5761 accctttctg agctcacaaa ttcgaggttt ccagtcccca tcgattcgct tttcaccgcc
5821 cagaataatg tgttgcaggt gcagtgtcaa aatggcaggt gtacacttga tggtgagtta
5881 caaggcacaa cccagttgct cccaactggc atctgtgcat tcagaggacg ggtgacagca
5941 caaattaacc aacgtgacag gtggcacatg caactgcaaa acctcaatgg tacaacatat
6001 gacccaactg atgatgtgcc agccccgctg ggtacacctg acttcaaggg cgtcgtgttt
6061 gggatggtga gccaaagaaa tgtgggtaat gatgcgcctg gctcaaccag agcccaacag
6121 gcgtgggttt caacctatag cccccaattt gtccccaaat taggttctgt caatcttaga
6181 attagtgata atgatgattt ccaattccag ccgacaaaat tcacaccagt gggcgtcaat
6241 gatgacgatg atggccaccc gttcagacaa tgggaactac caaactattc aggggagctt
6301 accttgaata tgaatcttgc ccccccagtt gctccaaatt ttcctggtga acaattgtta
6361 ttcttcagat ctttcgtgcc atgctcagga ggttacaacc aaggtattat agattgtctt
6421 attccccaag aatggatcca acacttttat caggaatcag caccctccca gtcagacgtg
6481 gccctaatca ggtatgtcaa ccccgatacg ggacgtacac tgtttgaagc aaaattgcac
6541 agatctggtt acattactgt ggctcactct ggagactatc ctcttgttgt tccggctaat
6601 ggacacttta gatttgattc ttgggtaaat cagttttact cactcgcccc aatgggaact
6661 gggaatgggc gaaggagggc tcagtaatgg ctggggcttt cattgcagga ttggcaggcg
6721 acatgctcac gtcatctgtg ggctcccttg tgaacgcagg ggcaaacgcc atcaaccaaa
6781 agatagactt tgaaaacaac aaacaactcc agtctgcttc ctttcagcat gataaagaga
6841 tgctccaagc gcaggtgagg gcaaccaagc agctgcaatc tgaaatgata gccctaaagc
6901 agggggtttt ggccgcaggc ggcttttccc ccactgatgc agcaagggga tccattggtg
6961 cacccatgac aaaggtgctt gactggtctg gcactcgata ctgggcgccc aattccacaa
7021 agacaactgg ctattcggga caattcacct ctgcacctgt gcatatgtct agcccaaatg
7081 ctccacaatc aaaacctgca aagcctaggt ctctagctcc ttcctcttct tctagcagtg
7141 tctatagtat gtatactcaa tctactcatt taacatctgg ctcttctagt aatgcttctt
7201 ctgcctccac aaaatttaca aatttaagct ctggctcctc tcaaaacaga acagcagagt
7261 gggtaaatca acagagaagt cttagccctt tcatgagtgg cgcacttaac atctcacatg
7321 tcacgccacc ctcaagtagg gcttccagtt ctgggacggt ctcgaccgtg cccaaggaag
7381 ttttggactc ctggacgtct gcgtttaaca cacacagaca gccgctcttc gcacacctca
7441 gagtgagggg ggagtcacgt gtttagtgaa aagaaataat tggctataat g
//