Typing tool
|
Complete norovirus genomes
KY905330 | GII.17 | ||
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GII.P17 |
ORF1: 1..5084 ORF2: 5065..6687 ORF3: 6687..7466LOCUS KY905330 7491 bp RNA linear VRL 15-AUG-2017 DEFINITION Norovirus GII strain Hu/GII.P17_GII.17/NSW9428/2016/AU, partial genome. ACCESSION KY905330 VERSION KY905330.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7491) AUTHORS Lun,J.H. and White,P.A. TITLE Emerging Recombinant Noroviruses in the Oceania Region, Identified by Both Clinical and Wastewater Screening JOURNAL Unpublished REFERENCE 2 (bases 1 to 7491) AUTHORS Eden,J.-S., Lun,J.H., Tuipulotu,D.E. and White,P.A. TITLE Direct Submission JOURNAL Submitted (02-APR-2017) School of Biotechnology and Biomolecular Sciences, University of New South Wales, Botany Street, Sydney, New South Wales 2052, Australia COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R8 Sequencing Technology :: Illumina; MiSeq ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7491 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/GII.P17_GII.17/NSW9428/2016/AU" /host="Homo sapiens" /db_xref="taxon:122929" /country="Australia" /collection_date="Jul-2016" /note="genotype: GII.P17/GII.17" CDS <1..5084 /note="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="ARO77074.1" /translation="AAVAGKDNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPPGET KQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQNTAY SVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISFAKIEI TPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM IQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNI LNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELV PVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEAN ELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD IVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVAS TLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNC DRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFP GQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHE RMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQA IKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSARIRY YVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDE DDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE YLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIR KRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITS THVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSIL IKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI YKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPK LSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPN PNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFT GKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRC ARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRA VLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSI AHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKP TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPS ETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWM RFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5065..6687 /note="ORF2" /codon_start=1 /product="VP1" /protein_id="ARO77075.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" CDS 6687..7466 /note="ORF3" /codon_start=1 /product="VP2" /protein_id="ARO77076.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSAPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKFTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" 3'UTR 7467..7491 ORIGIN 1 ccgctgccgt tgctggcaaa gacaacaaca acgacaagga aaaatcttca agtgacagct 61 tgtttgctaa catgtctgtc acttttaaga aagccctcgg ggcgcggtct aaacaaccgc 121 ccccgggaga aacaaaacaa atacaaaaac caccaaggcc accgacaccg gaattggtga 181 agagaatacc tccaccccca cccaatggcg aggatgaacc agggatagtg tacaaggtgg 241 gagagggtgt gtctgggctg cccgacctaa caactgtggt acaacctgac gcacaaaaca 301 cagcttatag tgttccccca cttagccaga gagaagtcgg cgaagctaaa gaaccgctgc 361 ctggctccat tctggaaatg tgggatggtg agatctacca ctatgggctg tatgttgagc 421 gggggcatgt gctcggagta cacaaaccac ctgctgcaat aagctttgcc aaaattgaaa 481 taacaccgct gtctctctac tggagagtgg tctacactcc ccagtatttg atagatccag 541 gaactcttaa gaacttgagt ggagagactt tcccatacac ggcctttgac aacaactgtt 601 atgccttctg ttgttgggtc ctagacctca acgactcctg gcttagcagg agaatgatcc 661 aaagaacaac tggattcttc aaaccttatc aggattggaa cagaaaaccc ttaccaacca 721 tggatgaacc gaaaatcaag aaggctgcga atgctgtcct atgcgctctc tcctcactct 781 tcactagacc cattaaggac atcattggaa agcttagacc actgaacatt cttaatatac 841 tggcaacctg cgattggact tttgcaggca tagtggaatc cttgatcctt cttgctgaac 901 tctttggggt gttctggaca cccccagatg tgtctgcgat gattgctccc ttactcggtg 961 actacgagat gcaaggcccc gaagacctgg ccgtggaact tgtgcccgtg gtgatgggag 1021 gaataggttt ggtgttagga ttcaccaaag aaaagatcgg caagatgctt tcatcagctg 1081 cgaccacact tagggcctgc aaggatctag gatcttatgg attggagata ctcaaattgg 1141 tcatgaagtg gttcttcccc aagaaggagg aggctaacga actagccatg gtgagggcca 1201 ttgaggatgc agtcctggat ttggaggcaa tagaaaacaa tcacatgacc acccttctca 1261 aggataaaga cagcctggcc acatacatga ggactcttga cttggaagaa gagaaagcaa 1321 ggaaactgtc aaccaaatcg gcgtcacctg acatcgtggg tacaataaac gcattattgg 1381 ctaggatagc agccgccagg tcactggtcc acaaggctaa ggaggagctc tcgagcagac 1441 agagacctgt tgttgtaatg atatcaggta gaccaggtat aggaaagacc catctggcca 1501 gagagttagc caagaaagtt gcgtcaacac tgtcaggcga ccaaaggatt ggactggtac 1561 ctagaaatgg cgtcgaccat tgggacgcct acaagggaga aagggtggtc ctgtgggatg 1621 attatggtat gagcaaccct atacaggacg cactgaggct ccaagaattg gctgacacct 1681 gtcctctgac cctaaattgt gataggattg aaaacaaagg aaaagtgttc gacagtgatg 1741 ccataattat aacaaccaac cttgcaaacc cagcaccact agactatgtc aactttgagg 1801 cctgctctag acgcatagac ttcttggtgt atgcagacgc acctgacatt gagaaggcta 1861 agcgtgactt ccctggccaa ccagatatgt ggaaagacca tttcagacca gacttctcac 1921 acattaaact tcagctggca ccacagggag gttttgacaa aaatggcaac accccacatg 1981 gcaaaggtgt ggtgaagtcc ctgacgattg gttctctgat cgccagggcc tccggtttgc 2041 tccacgagag aatggatgaa ttcgagctcc aaggctctga cctgccaacc ttcaattttg 2101 accgcaacaa agtcgccgcc ttcagacaat tagcagctga aaacaaatat ggtcttatgg 2161 acacattgag ggtcggcaac caactgaaaa gtgttaaaac cctggatgag ctgaagcagg 2221 ccataaagaa catcagtatc aagaagtgtc agatagtgta taatggatgc acctatacca 2281 tggaatctga tgggaggggc aaggttgtgg ttgaaaaggt acaaaacgca acagttcaaa 2341 ccaacaatga acttgtaggg gcgctccacc acctgagatc tgcaaggata agatactatg 2401 ttaaatgttt ccaagaagcc atttactctc tactccaaat tgctggtgca gccttcgtca 2461 cctcacgcat cgtgaggcgc atgaacatat caaacctctg gtcgaagcca cccatcgagg 2521 agggtgatga gcctgaagac agaggaggat gccccaagcc cagggatgaa gatgacctca 2581 ctattgactc tagagacatt aaagtggaag ggaagaaggg caagaacaag tctggccggg 2641 gcaagaaaca cacagccttc tcttccaagg gcctcagtga tgaagagtac gatgagtaca 2701 agagaatcag agaggagagg aatggcaaat actcaataga ggaatacctc caagataggg 2761 acagatacta tgaagagctt gccattgcta aggccactga ggaggacttc tgtgaggagg 2821 aggagatcaa aatccgccag agaatcttcc gacccaccag gaagcagcgg aaagaggaaa 2881 gggccacgct tgggcttgtc acaggatcgg aaatcagaaa gaggaatcca gatgacttta 2941 aaccaaaagg aaaattgtgg gctgatgaca acaggagcgt ggattacaat gagaggatag 3001 attttgaggc tcccccgagt gtttggtcta ggatagtcaa ctttggcaca ggctggggat 3061 tctgggtttc tccaagtctc tttataactt caacacacgt cataccaaaa ggaatcactg 3121 aggcctttgg agtgcccata aaccaaatcc aaattcacaa atctggagaa ttttgccgct 3181 tgcggtttcc aaagccaatt agaccagacg tgagtgggat gatcttggaa gagggcgccc 3241 ctgaaggcac tgttgtgtct attctcatca aaaggacaac aggggagctg atgcctcttg 3301 cagtcagaat ggggactcat gccacaatga aaatccaagg tagaacggtg ggtggtcaga 3361 tgggtatgct tctcactggc tcaaatgcta aaagcatgga tctaggcaca acgccaggtg 3421 actgcggatg tccatacata tacaaaaggg gcaatgacct tgtggtcatt ggggtgcaca 3481 ctgcagcagc tcgtggaggc aacacggtca tatgtgccac acagggaagt gaaggtgaag 3541 ccactcttga aggaggtgac aacaagggta cctattgtgg agcccccatt ttgggacctg 3601 gcaatgcacc aaaattgagc acaaagacaa aattctggag atcctctaac gcaccgcttc 3661 ccccaggtac ttatgaacca gcataccttg gtgggagaga cccgcgcgtg aagggaggcc 3721 catctctgca acaagttatg agagaccaac ttaaaccttt tacagagccc agagggaagc 3781 caccaaaccc aaatgtctta gagtcagcaa agaagactat catcaatgtt ctggaacaaa 3841 ccattgaccc ccctcaaaag tggtcatatg cccaagcttg tgcatccctc gacaagacaa 3901 cctccagtgg atacccgcac cacgtccgga agaatgacta ttggagtggt gaatccttca 3961 caggaaaact tgcagatcag gcttcaaaag caaatctcat gtatgaggaa ggcaagcaca 4021 tgcaaccagt ttacaccgca gcactcaaag acgagctcgt gaaaactgac aaaatttatg 4081 gcaaaatcaa gaaaagactc ctgtggggtt ctgacctctc cacaatgatt cgatgcgcca 4141 gagcatttgg tggtctcatg gatgaattca aagcaaattg tattacactc cctatcagag 4201 ttggtatgaa tatgaatgaa gatggtccca taatatttga gaaacactcc aggtacaggt 4261 accactatga tgctgattac tcccgctggg actccacaca acagcgggca gtgctggaag 4321 cggcacttga aatcatggtg agattttctg ctgagccaca gctggcacaa atagtggcag 4381 aggacctgct gtcaccaagt gtggttgatg tgggcgattt caaaatcgct atcaatgaag 4441 gcctaccatc tggcgtgcct tgcacctcac aatggaattc tattgcccac tggttactta 4501 ccttgtgtgc cctttctgaa gtgacaggat taggtcctga catcatacaa gctaactcca 4561 tgtactcttt ctatggtgat gatgagattg tgagcacaga cataaaattg gacccagaaa 4621 aattgaccgc aaagctcaaa gaatatggcc ttaaacccac tcggcccgac aaaactgagg 4681 ggccgttggt gattagtgag gacctgaatg ggttgacttt cctccgccga acagtcaccc 4741 gtgatccagc aggttggttt ggaaagttgg accaaaactc catcctcagg cagttgtact 4801 ggacaagagg acccaaccat gaagacccca gtgagaccat gataccacac gcacaaagac 4861 ctgtgcagct catggcacta ctaggagaat cctccctaca tggaccctca ttttacagca 4921 aggttagcaa attagtcata tctgaactta aagagggagg aatggatttt tatgtgccca 4981 gacaagagtc aatgttcaga tggatgaggt tctcagatct aagcacatgg gagggcgatc 5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga atgacgccgc tccatctaat 5101 gatggtgctg ctggtctcgt accagagggc aacaacgaga cccttcccct agaaccagtt 5161 gcgggcgcag ctatagccgc acccgtcact ggccaaaata atataattga cccctggatt 5221 agaacaaatt ttgtgcaagc accaaatgga gagttcacag tgtcacccag aaactctcct 5281 ggagaaattt tattaaattt agagttgggc cctgatttga acccttattt ggctcatttg 5341 tcaaggatgt acaatgggta tgctggtgga gtggaagttc aggttctcct ggcagggaac 5401 gcgttcactg ccggaaagat cctcttcgcc gccgtcccgc caaatttccc agtggaattc 5461 ttaagcccag cccagatcac aatgctccca catttaatag tagatgttag gactcttgaa 5521 ccaattatga tcccactccc tgatgttagg aatacattct tccattatag taaccagcct 5581 aacagccgca tgagattagt ggctatgctc tataccccac tcagatctaa tggctcaggt 5641 gatgatgtct ttactgtctc ttgcagggtt ttgactaggc ctactcctga ttttgagttc 5701 acttatttag tgccaccttc tgttgaatct aaaactaagc ctttttcctt acctatttta 5761 accctttctg agctcacaaa ttcgaggttt ccagtcccca tcgattcgct tttcaccgcc 5821 cagaataatg tgttgcaggt gcagtgtcaa aatggcaggt gtacacttga tggtgagtta 5881 caaggcacaa cccagttgct cccaactggc atctgtgcat tcagaggacg ggtgacagca 5941 caaattaacc aacgtgacag gtggcacatg caactgcaaa acctcaatgg tacaacatat 6001 gacccaactg atgatgtgcc agccccgctg ggtacacctg acttcaaggg cgtcgtgttt 6061 gggatggtga gccaaagaaa tgtgggtaat gatgcgcctg gctcaaccag agcccaacag 6121 gcgtgggttt caacctatag cccccaattt gtccccaaat taggttctgt caatcttaga 6181 attagtgata atgatgattt ccaattccag ccgacaaaat tcacaccagt gggcgtcaat 6241 gatgacgatg atggccaccc gttcagacaa tgggaactac caaactattc aggggagctt 6301 accttgaata tgaatcttgc ccccccagtt gctccaaatt ttcctggtga acaattgtta 6361 ttcttcagat ctttcgtgcc atgctcagga ggttacaacc aaggtattat agattgtctt 6421 attccccaag aatggatcca acacttttat caggaatcag caccctccca gtcagacgtg 6481 gccctaatca ggtatgtcaa ccccgatacg ggacgtacac tgtttgaagc aaaattgcac 6541 agatctggtt acattactgt ggctcactct ggagactatc ctcttgttgt tccggctaat 6601 ggacacttta gatttgattc ttgggtaaat cagttttact cactcgcccc aatgggaact 6661 gggaatgggc gaaggagggc tcagtaatgg ctggggcttt cattgcagga ttggcaggcg 6721 acatgctcac gtcatctgtg ggctcccttg tgaacgcagg ggcaaacgcc atcaaccaaa 6781 agatagactt tgaaaacaac aaacaactcc agtctgcttc ctttcagcat gataaagaga 6841 tgctccaagc gcaggtgagg gcaaccaagc agctgcaatc tgaaatgata gccctaaagc 6901 agggggtttt ggccgcaggc ggcttttccc ccactgatgc agcaagggga tccattggtg 6961 cacccatgac aaaggtgctt gactggtctg gcactcgata ctgggcgccc aattccacaa 7021 agacaactgg ctattcggga caattcacct ctgcacctgt gcatatgtct agcccaaatg 7081 ctccacaatc aaaacctgca aagcctaggt ctctagctcc ttcctcttct tctagcagtg 7141 tctatagtat gtatactcaa tctactcatt taacatctgg ctcttctagt aatgcttctt 7201 ctgcctccac aaaatttaca aatttaagct ctggctcctc tcaaaacaga acagcagagt 7261 gggtaaatca acagagaagt cttagccctt tcatgagtgg cgcacttaac atctcacatg 7321 tcacgccacc ctcaagtagg gcttccagtt ctgggacggt ctcgaccgtg cccaaggaag 7381 ttttggactc ctggacgtct gcgtttaaca cacacagaca gccgctcttc gcacacctca 7441 gagtgagggg ggagtcacgt gtttagtgaa aagaaataat tggctataat g //