Typing tool
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Typing tool
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Complete norovirus genomes
| KY887598 | GII.3 | |
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| GII.P16 |
ORF1: 1..5083
ORF2: 5064..6710
ORF3: 6710..7474
LOCUS KY887598 7533 bp RNA linear VRL 15-JUL-2017
DEFINITION Norovirus GII isolate Hu/UK/2016/GII.P16_GII.3/NOR-2610, partial
genome.
ACCESSION KY887598
VERSION KY887598.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7533)
AUTHORS Ruis,C., Roy,S., Brown,J.R., Allen,D.J., Goldstein,R.A. and
Breuer,J.
TITLE The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is
circulating worldwide, arose by late-2014 and contains polymerase
changes that may increase virus transmission
JOURNAL PLoS ONE 12 (6), E0179572 (2017)
PUBMED 28662035
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7533)
AUTHORS Ruis,C., Roy,S., Brown,J.R., Allen,D.J., Goldstein,R.A. and
Breuer,J.
TITLE Direct Submission
JOURNAL Submitted (03-APR-2017) Infection and Immunity, University College
London, Gower Street, London WC1E6BT, United Kingdom
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 8.5
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7533
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/UK/2016/GII.P16_GII.3/NOR-2610"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="United Kingdom: London"
/collection_date="20-Apr-2016"
/note="genotype: GII.P16_GII.3"
CDS <1..5083
/codon_start=2
/product="non-structural polyprotein"
/protein_id="ASK12134.1"
/translation="DATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPAPR
DEPQKPLRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVANT
AFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARV
ELAPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSR
RMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPL
NILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVE
LVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE
ANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSAS
PDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARKV
ASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTL
NCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD
FPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL
HERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEELK
QAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKHARI
RYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPKSED
DEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDKYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIR
KRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITS
THVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVL
IKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYI
YKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPK
LSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPR
PSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGETFT
GKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRC
ARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRA
VLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKP
TRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPS
ETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPNFVNEDGVE"
CDS 5064..6710
/codon_start=1
/product="VP1"
/protein_id="ASK12135.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 6710..7474
/codon_start=1
/product="VP2"
/protein_id="ASK12136.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQVEATKKLQADMIAIKQGALTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTHQTVHRSTPNFKTNQAPKSTPSSGSTVRSNSTQITSLSS
HSSGSSRSSGSTVISSISSSNRTRDWVNQQNFNLEPHMPGSLRTAFVSPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 cgacgctacc gttgccgttg cttgcaacaa caacaacgac aaggaaaaat cttcaggtga
61 aggcttattc acaaatatgt cttccacctt aaagaaagcc ctcggggcta ggcccaaaca
121 gcctgccccg agagacgaac cacaaaagcc cctaagacca ccaactcccg agttggtcaa
181 gaggataccc cctcctccac ctaatggcga agaagaagaa gaaccagtca ttaggtacga
241 ggttaagagt gggatctctg gcctgcccga gcttacaaca gtcccccaac cggacgtggc
301 caacacagca ttcagtgttc caccactgag cttgagagaa aacagggagg ccaaggaacc
361 gctaacaggg gcaatattag agatgtggga tggagagata taccactatg gcctgtacgt
421 ggagaaaggc ttagtgttgg gtgtgcacaa accacctgca gccataagca tggcaagagt
481 ggagctggcg ccgctgtcat tgtactggcg tgtggtgtac actccccaat acctcatctc
541 ccctgaaact ctcaggaggc tcaacggaga ggcgttccct tacaccgcct ttgacaacaa
601 ctgctatgcc ttttgctgct gggtgttaga cctcaatgac tcatggctta gcaggaggat
661 ggtgcaaaga acaacgggct tcttcagacc ttaccaagag tggaacagaa aacccctgcc
721 taccatggat gactccaaaa ttaagaaggt agcaaatata ttcctatgtt cattgtccac
781 attattcacc agacccataa aagacctcat aggaaaaatt aaaccattaa acatattgaa
841 tatcctggca acgtgtgact ggacgtttgc cggaatagtg gagtctctga tattacttgc
901 tgaactcttc ggagttttct ggacaccccc agatgtgtct gctatgatcg ctcccttact
961 cggggactac gagttgcaag ggccagaaga cctcgccgtt gaactcgtac ctgtagtaat
1021 gggagggatt ggtttggtgt tgggattcac caaagagaaa attggcaaaa tgttgtcctc
1081 agcagcatca acactcaggg cttgcaaaga tcttggtgcc tatggcttag agatactcaa
1141 attggtcatg aagtggttct tcccaaagaa agaggaggcc aatgagctag ccatggtgag
1201 ggccatagag gatgccgtac tagatcttga ggcaatagaa aataaccaca tgacaaccct
1261 gttgaaagac aaagacagct tagcaacata catgaaaaca ctggacatgg aggaggagaa
1321 agccagaagg ttgtccacaa aatctgcatc ccctgacata gttgggacaa tcaacgccct
1381 gctggctcga atagcagcgg ccaggtcatt agtccacagg gccaaggaag agctatctag
1441 caggataaga ccagtagttg ttatgatatc tggcaaacca ggaataggca aaactcatct
1501 ggccagggag gtggcaagaa aggtggcatc cactctcaca ggggatcaaa gagtcggact
1561 cataccaagg aacggtgtgg accattggga tgcatacaaa ggtgagagag tcgtgctgtg
1621 ggacgactat ggcatgagta accccattca tgatgctctt cgcatacaag aattggctga
1681 tacgtgtccc cttaccttaa attgtgacag aattgaaaat aagggaaaag tttttgacag
1741 tgaagtcata ataattacaa caaaccttgc caatccagcc ccacttgatt atgtcaactt
1801 tgaggcctgt tccaggagaa ttgatttcct ggtgtacgct gaggcaccag aagtagaaaa
1861 ggcaaaacgg gactttcctg gtcagccaga tatgtggaag gacgccttca agccggactt
1921 ttcacacatc aagctacagc ttgcacctca gggcggcttt gacaagaatg gtaacacccc
1981 acatgggaaa ggagtgatga agaccctcac taccggttct ctgattgccc gtgcatcagg
2041 cctactgcat gagaggatgg atgaatttga actccaaggt cccacaatca ccaccttcaa
2101 tttcgaccgg aacagaatca cagcattcag acaattggct gcagaaaaca agtatggatt
2161 ggtggatacc atgaaagttg gcaatcaact aaaaggagtg aaaaccatgg aagaactcaa
2221 acaagcaatc aggaatgtga ccatcaagag gtgccggatc atctacggtg gctccacgta
2281 tgaccttgaa tctgatggca agggcaaagt tttggtggaa aaggtcaaga acacctctgt
2341 acagaccaac aacgagttgg ccggggccct gcaccatctc aaacatgccc gaatcaggta
2401 ctatgtcaaa tgtgtgcaag aagcagtcta ttccatcata caaattgccg gcgctgcatt
2461 tgtcaccacg cgcattgcac gccgcatgaa catacaagaa ctctggtcga agccacaatt
2521 agatcaaaat gaatcagaga ctaaggaaga ggcccccaag tcagaagatg acgagttcat
2581 catatcttct aaggacatca aggaggaagg aaagaagggc aaaaacaaaa ctggccgtgg
2641 caagaaacac actgcatttt ccagcaaggg cttgagcgat gaggagtatg acgagtacaa
2701 gaggataaga gaagagagaa atgggaagta ctctatagag gagtatcttc aagacagaga
2761 caagtactat gaggagctcg ccattgccaa ggccacggaa gaagacttct gtgaagagga
2821 ggagatcaaa atccgtcaga gaattttccg tcccaccagg aaacaaagaa aggaagagag
2881 ggccacatta gggctagtaa caggttcaga aatcagaaaa agaaaccctg atgacttcaa
2941 acccaaaggg aagctgtggg ccgatgacaa cagaagtgtt gactacaatg agaaactgga
3001 ctttgaggcc cccccaagca tatggtctag gattgtgagc tttggttctg gctggggctt
3061 ctgggtatca ccaagcctgt tcataacatc aactcatgta atccccgcag gcataacaga
3121 agcatttgga gtccccatca aacaaattca gatccacaaa tcaggtgaat tttgccgatt
3181 cagattccca aaaccaatta gaccagatgt gacaggaatg atcttggaag aaggtgcgcc
3241 tgaaggcacc gtggcaactg tgctcatcaa acgccccacc ggagagctca tgcctcttgc
3301 agccagaatg ggaacacacg caaccatgaa aattcagggc cgcatggttg gcggacagat
3361 gggtatgttg ctcactggat caaatgctaa aggaatggat ttgggaacaa ctcctggtga
3421 ctgtggttgt ccttacatct ataaaagggg caatgattat atagtcattg gggtgcacac
3481 tgcagcagcc cgtggtggaa acaccgtcat ctgtgccaca cagggaagtg agggtgaggc
3541 aactcttgag ggtggagatg acaaaggaac atactgtggg gcacccattc taggccctgg
3601 gggtgcacca aaattgagca ccaaaaccaa attttggaga tcatcgaaca cgccccttcc
3661 accagggaca tatgaacctg cctacctcgg tggccgtgat ccgcgtgtta agggtgggcc
3721 ctccttgcag caggtaatga gagaccagtt gaagccattc actgaaccca ggggcaaacc
3781 tccaagacca agtgtattgg aagcagccaa acaaaccatt attaatgtcc tcgaacaaac
3841 cctggaccct ccacaaaaat ggacatacgc acaggcgtgt gcctcacttg acaaaaccac
3901 ctccagcggg catccccatc acgtccgaaa gaatgaattc tggaatggtg aaaccttcac
3961 tggtaaattg gcagaccaag catcaaaagc aaacctaatg tttgaggaag ggaaacacat
4021 gacaccagtg tatacagcag cactcaagga cgagctagtc aagactgaga aaatctatgg
4081 aaagatcaag aagagactgc tctggggctc tgacttgtcc accatgatcc ggtgcgctag
4141 gtcatttggt gggctcatgg acgagatgaa ggcacactgc atatcactcc cagtacgagt
4201 tggcatgaat atgaatgaag atggcccaat aatatttgag aaacattcca gatacaaata
4261 ccactatgat gcagactact ctcgttggga ttcaacacaa cagagggcag tactagcggc
4321 agccttggaa atcatggtta gattctctgc agaaccacaa ttggcacaaa tagtcgctga
4381 ggatctgctg gcccctagtg tagtagatgt aggagacttt aaaatcacaa taaatgaagg
4441 gctcccatct ggtgtgccgt gcacttctca atggaactcc atcgcacact ggctgctaac
4501 tctctgtgcc ttgtctgaag tcaccaaact gtcccctgac atcatacaag caaattccat
4561 gttctcattt tacggtgatg acgagattgt cagtaccgac ataaaattgg accctgaaca
4621 gttaaccgcc aaattgaagg agtacggcct gaaaccaacc cgcccagaca agaccgaggg
4681 acccctgatc atcagtgaag atttgaacgg actcactttc ctccgaagga cggtgactcg
4741 tgacccagct ggctggtttg gaaaactgga ccaaagctca attttgaggc agatgtactg
4801 gactagagga ccaaatcatg aagaccccag tgagacaatg ataccccatt ctcaaagacc
4861 catacagctc atggcactgc ttggtgaagc ctctcttcac ggaccctctt tctacagtaa
4921 aatcagtaaa ttggtcataa ctgaactcaa agaaggtggg atggactttt acgtgccaag
4981 acaggaaccc atgttcaggt ggatgaggtt ttctgacttg agcacgtggg agggcgatcg
5041 caatctggct cccaattttg tgaatgaaga tggcgtcgaa tgacgccgct ccatctaatg
5101 atggtgccgc cggcctcgtc ccagagatca acaatgaggc aatggcgcta gagccagtgg
5161 cgggtgcagc gatagcagca cccctcactg gtcagcaaaa tataattgat ccctggatta
5221 tgaataattt tgtgcaagca cctggtggtg agtttacagt gtcccccaga aattcccctg
5281 gtgaagtcct tcttaatttg gaactgggcc cagaaataaa tccctatttg gcccatcttg
5341 ctagaatgta caatggttat gcaggtggat ttgaagtgca ggtggtccta gctggaaatg
5401 cgtttacagc aggaaagata atctttgcag ccatcccccc caattttcca attgacaatt
5461 taagtgcagc acagattaca atgtgcccac atgtgattgt ggatgtcagg cagttggaac
5521 cagtcaacct cccgatgcct gacgttcgca acaacttctt tcattataac caagggtctg
5581 actcgaggtt acgcctaatt gcaatgctat acacacctct tagggcaaac aattctgggg
5641 atgatgtttt tactgtgtct tgtagagtgt taactagacc tagtcctgat ttctcattca
5701 atttccttgt gccacctact gtggagtcaa agacaaaacc cttttccctc cctatcctga
5761 ctatctctga aatgtccaat tctaggttcc cagtaccaat tgattcccta cataccagtc
5821 ctactgagaa tattgttgtt cagtgccaaa atgggcgcgt cacccttgat ggtgaactga
5881 tgggcaccac ccaactcttg cctagccaaa tctgtgcttt caggggcgtt ctcaccaggt
5941 caacaagcag agccagtgac caggccgata cagcaacccc tagattgttt aattattatt
6001 ggcacataca attggataat ctaaatggaa ccccttatga tcctgcagaa gacataccag
6061 gccccctagg gacaccagat ttccgtggca aagtctttgg cgtggccagc cagagaaatc
6121 ctgatgccac gactagggcg catgaggcaa agatagacac cacatctggc cgcttcaccc
6181 caaagctagg ctcattagag atatccactg aatctagtga ttttgaccaa aaccaaccga
6241 caagattcac cccagttggc attggagttg accatgaggc agactttcaa caatggaccc
6301 tacccgacta tgctggtcag ttcacacaca acatgaactt agccccagct gttgctccca
6361 acttccctgg tgagcagctc cttttcttcc gctcacattt gccatcttct ggtgggcgat
6421 ccaacgggat tctagactgc ctggttcccc aagaatgggt acagcacttc taccaagagt
6481 cagccccctc tcagtctcaa gtggccctgg ttaggtatgt taatcctgac actggtagag
6541 tgttatttga ggccaagcta cacaaattag gtttcatgac tatagccaag aatggtgatt
6601 ctccaataac tgtccctcca aatggatact ttaggtttga atcttgggtg aacccctttt
6661 acacacttgc ccctatggga actgggaatg ggcgtagaag gattcaataa tggctggagc
6721 ttttatagca ggattggctg gtgacatgct cacaaatact gtaggatctt tagttaatgc
6781 aggagctaat gctattaatc aaacaattga ctttgaaaat aataaatact tgcaaaatgc
6841 ttcttttaat catgataagg agatgttgaa tgcacaagtt gaggcaacaa agaagttaca
6901 ggctgacatg attgctatca aacaaggggc tttgaccgct ggcggcttct cccctactga
6961 tgcagcccgt ggggcaatta atgcccccat gacaaaagtc ctagattgga atggaacgag
7021 atactgggca ccaggtgcca cctccacaac ctcgatgtcg ggtggcttta cacatcaaac
7081 tgtgcacaga tccacaccaa actttaaaac gaaccaggcc cccaaatcca cacccagcag
7141 tgggtctaca gtgaggtcaa actcaaccca aatcactagc ctgagctcac actcgtccgg
7201 gtcgtctcga tccagcgggt ctacagtcat cagctcaata tcatcctcta acaggactag
7261 ggactgggtc aaccaacaaa attttaattt ggaaccacac atgcctggat ctcttaggac
7321 agcttttgtc tctccaccat ctagtacagc ctctagctca ggcacagtct caactgtgcc
7381 caaaaatgtt ttggactcct ggacatctgc gttcaacacg cgcagacagc cgctatttgc
7441 acaccttcgc agaagggggg agtcaaatgt ttagtgaaaa gattatttta aatttggttt
7501 aaattaggtt taatttggaa tcttttaaaa aaa
//