Typing tool
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Typing tool
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Complete norovirus genomes
| KY887597 | GII.3 | |
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| GII.P16 |
ORF1: 1..5098
ORF2: 5079..6725
ORF3: 6725..7489
LOCUS KY887597 7549 bp RNA linear VRL 15-JUL-2017
DEFINITION Norovirus GII isolate Hu/UK/2016/GII.P16_GII.3/NOR-2604, partial
genome.
ACCESSION KY887597
VERSION KY887597.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7549)
AUTHORS Ruis,C., Roy,S., Brown,J.R., Allen,D.J., Goldstein,R.A. and
Breuer,J.
TITLE The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is
circulating worldwide, arose by late-2014 and contains polymerase
changes that may increase virus transmission
JOURNAL PLoS ONE 12 (6), E0179572 (2017)
PUBMED 28662035
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7549)
AUTHORS Ruis,C., Roy,S., Brown,J.R., Allen,D.J., Goldstein,R.A. and
Breuer,J.
TITLE Direct Submission
JOURNAL Submitted (03-APR-2017) Infection and Immunity, University College
London, Gower Street, London WC1E6BT, United Kingdom
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 8.5
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7549
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/UK/2016/GII.P16_GII.3/NOR-2604"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="United Kingdom: London"
/collection_date="08-Apr-2016"
/note="genotype: GII.P16_GII.3"
CDS <1..5098
/codon_start=2
/product="non-structural polyprotein"
/protein_id="ASK12131.1"
/translation="KMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPK
QPAPRDEPQKPLRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMARVELAPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKT
MEELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL
KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEA
PKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDKYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN
HEDPSETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
CDS 5079..6725
/codon_start=1
/product="VP1"
/protein_id="ASK12132.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDATTRAHEAKIDTTSGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDHEADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSHLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 6725..7489
/codon_start=1
/product="VP2"
/protein_id="ASK12133.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQVEATKKLQADMIAIKQGALTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTHQTVHRSTPNFKTNQAPKSTPSSGSTVRSNSTQITSLSS
HSSGSSRSSGSTVISSISSSNRTRDWVNQQNFNLEPHMPGSLRTAFVSPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gaagatggcg tctaacgacg ctaccgttgc cgttgcttgc aacaacaaca acgacaagga
61 aaaatcttca ggtgaaggct tattcacaaa tatgtcttcc accttaaaga aagccctcgg
121 ggctaggccc aaacagcctg ccccgagaga cgaaccacaa aagcccctaa gaccaccaac
181 tcccgagttg gtcaagagga taccccctcc tccacctaat ggcgaagaag aagaagaacc
241 agtcattagg tacgaggtta agagtgggat ctctggcctg cccgagctta caacagtccc
301 ccaaccggac gtggccaaca cagcattcag tgttccacca ctgagcttga gagaaaacag
361 ggaggccaag gaaccgctaa caggggcaat attagagatg tgggatggag agatatacca
421 ctatggcctg tacgtggaga aaggcttagt gttgggtgtg cacaaaccac ctgcagccat
481 aagcatggca agagtggagc tggcgccgct gtcattgtac tggcgtgtgg tgtacactcc
541 ccaatacctc atctcccctg aaactctcag gaggctcaac ggagaggcgt tcccttacac
601 cgcctttgac aacaactgct atgccttttg ctgctgggtg ttagacctca atgactcatg
661 gcttagcagg aggatggtgc aaagaacaac gggcttcttc agaccttacc aagagtggaa
721 cagaaaaccc ctgcctacca tggatgactc caaaattaag aaggtagcaa atatattcct
781 atgttcattg tccacattat tcaccagacc cataaaagac ctcataggaa aaattaaacc
841 attaaacata ttgaatatcc tggcaacgtg tgactggacg tttgccggaa tagtggagtc
901 tctgatatta cttgctgaac tcttcggagt tttctggaca cccccagatg tgtctgctat
961 gatcgctccc ttactcgggg actacgagtt gcaagggcca gaagacctcg ccgttgaact
1021 cgtacctgta gtaatgggag ggattggttt ggtgttggga ttcaccaaag agaaaattgg
1081 caaaatgttg tcctcagcag catcaacact cagggcttgc aaagatcttg gtgcctatgg
1141 cttagagata ctcaaattgg tcatgaagtg gttcttccca aagaaagagg aggccaatga
1201 gctagccatg gtgagggcca tagaggatgc cgtactagat cttgaggcaa tagaaaataa
1261 ccacatgaca accctgttga aagacaaaga cagcttagca acatacatga aaacactgga
1321 catggaggag gagaaagcca gaaggttgtc cacaaaatct gcatcccctg acatagttgg
1381 gacaatcaac gccctgctgg ctcgaatagc agcggccagg tcattagtcc acagggccaa
1441 ggaagagcta tctagcagga taagaccagt agttgttatg atatctggca aaccaggaat
1501 aggcaaaact catctggcca gggaggtggc aagaaaggtg gcatccactc tcacagggga
1561 tcaaagagtc ggactcatac caaggaacgg tgtggaccat tgggatgcat acaaaggtga
1621 gagagtcgtg ctgtgggacg actatggcat gagtaacccc attcatgatg ctcttcgcat
1681 acaagaattg gctgatacgt gtccccttac cttaaattgt gacagaattg aaaataaggg
1741 aaaagttttt gacagtgaag tcataataat tacaacaaac cttgccaatc cagccccact
1801 tgattatgtc aactttgagg cctgttccag gagaattgat ttcctggtgt acgctgaggc
1861 accagaagta gaaaaggcaa aacgggactt tcctggtcag ccagatatgt ggaaggacgc
1921 cttcaagccg gacttttcac acatcaagct acagcttgca cctcagggcg gctttgacaa
1981 gaatggtaac accccacatg ggaaaggagt gatgaagacc ctcactaccg gttctctgat
2041 tgcccgtgca tcaggcctac tgcatgagag gatggatgaa tttgaactcc aaggtcccac
2101 aatcaccacc ttcaatttcg accggaacag aatcacagca ttcagacaat tggctgcaga
2161 aaacaagtat ggattggtgg ataccatgaa agttggcaat caactaaaag gagtgaaaac
2221 catggaagaa ctcaaacaag caatcaggaa tgtgaccatc aagaggtgcc ggatcatcta
2281 cggtggctcc acgtatgacc ttgaatctga tggcaagggc aaagttttgg tggaaaaggt
2341 caagaacacc tctgtacaga ccaacaacga gttggccggg gccctgcacc atctcaaaca
2401 tgcccgaatc aggtactatg tcaaatgtgt gcaagaagca gtctattcca tcatacaaat
2461 tgccggcgct gcatttgtca ccacgcgcat tgcacgccgc atgaacatac aagaactctg
2521 gtcgaagcca caattagatc aaaatgaatc agagactaag gaagaggccc ccaagtcaga
2581 agatgacgag ttcatcatat cttctaagga catcaaggag gaaggaaaga agggcaaaaa
2641 caaaactggc cgtggcaaga aacacactgc attttccagc aagggcttga gcgatgagga
2701 gtatgacgag tacaagagga taagagaaga gagaaatggg aagtactcta tagaggagta
2761 tcttcaagac agagacaagt actatgagga gctcgccatt gccaaggcca cggaagaaga
2821 cttctgtgaa gaggaggaga tcaaaatccg tcagagaatt ttccgtccca ccaggaaaca
2881 aagaaaggaa gagagggcca cattagggct agtaacaggt tcagaaatca gaaaaagaaa
2941 ccctgatgac ttcaaaccca aagggaagct gtgggccgat gacaacagaa gtgttgacta
3001 caatgagaaa ctggactttg aggccccccc aagcatatgg tctaggattg tgagctttgg
3061 ttctggctgg ggcttctggg tatcaccaag cctgttcata acatcaactc atgtaatccc
3121 cgcaggcata acagaagcat ttggagtccc catcaaacaa attcagatcc acaaatcagg
3181 tgaattttgc cgattcagat tcccaaaacc aattagacca gatgtgacag gaatgatctt
3241 ggaagaaggt gcgcctgaag gcaccgtggc aactgtgctc atcaaacgcc ccaccggaga
3301 gctcatgcct cttgcagcca gaatgggaac acacgcaacc atgaaaattc agggccgcat
3361 ggttggcgga cagatgggta tgttgctcac tggatcaaat gctaaaggaa tggatttggg
3421 aacaactcct ggtgactgtg gttgtcctta catctataaa aggggcaatg attatatagt
3481 cattggggtg cacactgcag cagcccgtgg tggaaacacc gtcatctgtg ccacacaggg
3541 aagtgagggt gaggcaactc ttgagggtgg agatgacaaa ggaacatact gtggggcacc
3601 cattctaggc cctgggggtg caccaaaatt gagcaccaaa accaaatttt ggagatcatc
3661 gaacacgccc cttccaccag ggacatatga acctgcctac ctcggtggcc gtgatccgcg
3721 tgttaagggt gggccctcct tgcagcaggt aatgagagac cagttgaagc cattcactga
3781 acccaggggc aaacctccaa gaccaagtgt attggaagca gccaaacaaa ccattattaa
3841 tgtcctcgaa caaaccctgg accctccaca aaaatggaca tacgcacagg cgtgtgcctc
3901 acttgacaaa accacctcca gcgggcatcc ccatcacgtc cgaaagaatg aattctggaa
3961 tggtgaaacc ttcactggta aattggcaga ccaagcatca aaagcaaacc taatgtttga
4021 ggaagggaaa cacatgacac cagtgtatac agcagcactc aaggacgagc tagtcaagac
4081 tgagaaaatc tatggaaaga tcaagaagag actgctctgg ggctctgact tgtccaccat
4141 gatccggtgc gctaggtcat ttggtgggct catggacgag atgaaggcac actgcatatc
4201 actcccagta cgagttggca tgaatatgaa tgaagatggc ccaataatat ttgagaaaca
4261 ttccagatac aaataccact atgatgcaga ctactctcgt tgggattcaa cacaacagag
4321 ggcagtacta gcggcagcct tggaaatcat ggttagattc tctgcagaac cacaattggc
4381 acaaatagtc gctgaggatc tgctggcccc tagtgtagta gatgtaggag actttaaaat
4441 cacaataaat gaagggctcc catctggtgt gccgtgcact tctcaatgga actccatcgc
4501 acactggctg ctaactctct gtgccttgtc tgaagtcacc aaactgtccc ctgacatcat
4561 acaagcaaat tccatgttct cattttacgg tgatgacgag attgtcagta ccgacataaa
4621 attggaccct gaacagttaa ccgccaaatt gaaggagtac ggcctgaaac caacccgccc
4681 agacaagacc gagggacccc tgatcatcag tgaagatttg aacggactca ctttcctccg
4741 aaggacggtg actcgtgacc cagctggctg gtttggaaaa ctggaccaaa gctcaatttt
4801 gaggcagatg tactggacta gaggaccaaa tcatgaagac cccagtgaga caatgatacc
4861 ccattctcaa agacccatac agctcatggc actgcttggt gaagcctctc ttcacggacc
4921 ctctttctac agtaaaatca gtaaattggt cataactgaa ctcaaagaag gtgggatgga
4981 cttttacgtg ccaagacagg aacccatgtt caggtggatg aggttttctg acttgagcac
5041 gtgggagggc gatcgcaatc tggctcccaa ttttgtgaat gaagatggcg tcgaatgacg
5101 ccgctccatc taatgatggt gccgccggcc tcgtcccaga gatcaacaat gaggcaatgg
5161 cgctagagcc agtggcgggt gcagcgatag cagcacccct cactggtcag caaaatataa
5221 ttgatccctg gattatgaat aattttgtgc aagcacctgg tggtgagttt acagtgtccc
5281 ccagaaattc ccctggtgaa gtccttctta atttggaact gggcccagaa ataaatccct
5341 atttggccca tcttgctaga atgtacaatg gttatgcagg tggatttgaa gtgcaggtgg
5401 tcctagctgg aaatgcgttt acagcaggaa agataatctt tgcagccatc ccccccaatt
5461 ttccaattga caatttaagt gcagcacaga ttacaatgtg cccacatgtg attgtggatg
5521 tcaggcagtt ggaaccagtc aacctcccga tgcctgacgt tcgcaacaac ttctttcatt
5581 ataaccaagg gtctgactcg aggttacgcc taattgcaat gctatacaca cctcttaggg
5641 caaacaattc tggggatgat gtttttactg tgtcttgtag agtgttaact agacctagtc
5701 ctgatttctc attcaatttc cttgtgccac ctactgtgga gtcaaagaca aaaccctttt
5761 ccctccctat cctgactatc tctgaaatgt ccaattctag gttcccagta ccaattgatt
5821 ccctacatac cagtcctact gagaatattg ttgttcagtg ccaaaatggg cgcgtcaccc
5881 ttgatggtga actgatgggc accacccaac tcttgcctag ccaaatctgt gctttcaggg
5941 gcgttctcac caggtcaaca agcagagcca gtgaccaggc cgatacagca acccctagat
6001 tgtttaatta ttattggcac atacaattgg ataatctaaa tggaacccct tatgatcctg
6061 cagaagacat accaggcccc ctagggacac cagatttccg tggcaaagtc tttggcgtgg
6121 ccagccagag aaatcctgat gccacgacta gggcgcatga ggcaaagata gacaccacat
6181 ctggccgctt caccccaaag ctaggctcat tagagatatc cactgaatct agtgattttg
6241 accaaaacca accgacaaga ttcaccccag ttggcattgg agttgaccat gaggcagact
6301 ttcaacaatg gaccctaccc gactatgctg gtcagttcac acacaacatg aacttagccc
6361 cagctgttgc tcccaacttc cctggtgagc agctcctttt cttccgctca catttgccat
6421 cttctggtgg gcgatccaac gggattctag actgcctggt tccccaagaa tgggtacagc
6481 acttctacca agagtcagcc ccctctcagt ctcaagtggc cctggttagg tatgttaatc
6541 ctgacactgg tagagtgtta tttgaggcca agctacacaa attaggtttc atgactatag
6601 ccaagaatgg tgattctcca ataactgtcc ctccaaatgg atactttagg tttgaatctt
6661 gggtgaaccc cttttacaca cttgccccta tgggaactgg gaatgggcgt agaaggattc
6721 aataatggct ggagctttta tagcaggatt ggctggtgac atgctcacaa atactgtagg
6781 atctttagtt aatgcaggag ctaatgctat taatcaaaca attgactttg aaaataataa
6841 atacttgcaa aatgcttctt ttaatcatga taaggagatg ttgaatgcac aagttgaggc
6901 aacaaagaag ttacaggctg acatgattgc tatcaaacaa ggggctttga ccgctggcgg
6961 cttctcccct actgatgcag cccgtggggc aattaatgcc cccatgacaa aagtcctaga
7021 ttggaatgga acgagatact gggcaccagg tgccacctcc acaacctcga tgtcgggtgg
7081 ctttacacat caaactgtgc acagatccac accaaacttt aaaacgaacc aggcccccaa
7141 atccacaccc agcagtgggt ctacagtgag gtcaaactca acccaaatca ctagcctgag
7201 ctcacactcg tccgggtcgt ctcgatccag cgggtctaca gtcatcagct caatatcatc
7261 ctctaacagg actagggact gggtcaacca acaaaatttt aatttggaac cacacatgcc
7321 tggatctctt aggacagctt ttgtctctcc accatctagt acagcctcta gctcaggcac
7381 agtctcaact gtgcccaaaa atgttttgga ctcctggaca tctgcgttca acacgcgcag
7441 acagccgcta tttgcacacc ttcgcagaag gggggagtca aatgtttagt gaaaagatta
7501 ttttaaattt ggtttaaatt aggtttaatt tggaatcttt taaaaaaaa
//